Items where Subject is "Q Science (General)"

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Abbasnezhad, Azam and Asgharzadeh, Hamed and Ansari Hamedani, Ali and Hayat Soytaş, Serap (2020) One-pot synthesis of tin chalcogenide-reduced graphene oxide-carbon nanotube nanocomposite as anode material for lithium-ion batteries. Dalton Transactions, 49 (18). pp. 5890-5897. ISSN 1477-9226 (Print) 1477-9234 (Online)

Abdizadeh, Haleh and Atılgan, Ali Rana and Atılgan, Canan (2015) Detailed molecular dynamics simulations of human transferrin provide insights into iron release dynamics at serum and endosomal pH. Journal of Biological Inorganic Chemistry, 20 (4). pp. 705-718. ISSN 0949-8257 (Print) 1432-1327 (Online)

Abdizadeh, Haleh and Atılgan, Ali Rana and Atılgan, Canan and Dedeoğlu, Burcu (2017) Computational approaches for deciphering the equilibrium and kinetic properties of iron transport proteins. Metallomics, 9 (11). pp. 1513-1533. ISSN 1756-5901 (Print) 1756-591X (Online)

Abdizadeh, Haleh and Atılgan, Canan (2016) Predicting long term cooperativity and specific modulators of receptor interactions in human transferrin from dynamics within a single microstate. Physical Chemistry Chemical Physics, 18 (11). pp. 7916-7926. ISSN 1463-9076 (Print) 1463-9084 (Online)

Abdizadeh, Haleh and Güven, Gökçe and Atılgan, Ali Rana and Atılgan, Canan (2015) Perturbation response scanning specifies key regions in subtilisin serine protease for both function and stability. Journal of Enzyme Inhibition and Medicinal Chemistry, 30 (6). pp. 867-873. ISSN 1475-6366 (Print) 1475-6374 (Online)

Abdizadeh, Haleh and Jalalypour, Farzaneh and Atılgan, Ali Rana and Atılgan, Canan (2020) A coarse-grained methodology identifies intrinsic mechanisms that dissociate interacting protein pairs. Frontiers in Molecular Biosciences, 7 . ISSN 2296-889X

Abdizadeh, Haleh and Tamer, Yusuf Talha and Acar, Ömer and Toprak, Erdal and Atılgan, Ali Rana and Atılgan, Canan (2017) Increased substrate affinity in the escherichia coli L28R dihydrofolate reductase mutant causes trimethoprim resistance. Physical Chemistry Chemical Physics, 19 (18). pp. 11416-11428. ISSN 1463-9076 (Print) 1463-9084 (Online)

Abdolhosseinzadeh, Sina and Mousavi, Mirsajjad and Haghmoradi, Navid and Alkan Gürsel, Selmiye (2019) A continuous-flow photocatalytic reactor for the precisely controlled deposition of metallic nanoparticles. Journal of Visualized Experiments (JoVE), 146 . ISSN 1940-087X

Abdolhosseinzadeh, Sina and Sadighikia, Sina and Alkan Gürsel, Selmiye (2018) Scalable synthesis of sub-nanosized platinum-reduced graphene oxide composite by an ultraprecise photocatalytic method. ACS Sustainable Chemistry and Engineering, 6 (3). pp. 3773-3782. ISSN 2168-0485

Abouee-Mehrizi, Hossein and Balcıoğlu, Ahmet Barış and Baron, Opher (2012) Strategies for a centralized single product multiclass M/G/1 make-to-stock queue. Operations Research, 60 (4). pp. 803-812. ISSN 0030-364X

Ahmed, Faran and Kılıç, Kemal (2016) Fuzzy extent analysis: comparison of defuzzification methods. In: 6th International Conference on Industrial Engineering and Operations Management (IEOM 2016), Kuala Lumpur, Malaysia

Ahuja, Ravindra K. and Cunha, Claudio B. and Şahin, Güvenç (2005) Network flow approaches in railroad planning and scheduling. In: Smith, J. Cole, (ed.) Tutorials in Operations Research 2005. Institute for Operations Research and the Management Sciences, Hanover, MD, USA.

Aka, Yeliz and Karakaş, Bahriye and Acikbas, Ufuk and Başağa, Hüveyda and Gül, Özgür and Kütük, Özgür (2021) Kinome-wide RNAi screening for mediators of ABT-199 resistance in breast cancer cells identifies Wee1 as a novel therapeutic target. International Journal of Biochemistry and Cell Biology, 137 . ISSN 1357-2725 (Print) 1878-5875 (Online)

Aka Kaçar, Yıldız and Lezzoni, Amy F. and Çetiner, Selim (2005) Sweet cherry cultivar identification by using SSR markers. Journal of Biological Sciences, 5 (5). pp. 616-619. ISSN 1727-3048 (print) 1812-5719 (online)

Akkoç, Yunus and Gözüaçık, Devrim (2018) Autophagy and liver cancer. Turkish Journal of Gastroenterology, 29 (3). pp. 270-282. ISSN 1300-4948 (Print) 2148-5607 (Online)

Akkoç, Yunus and Lyubenova, Lyudmila Slaveykova and Grausgruber, Heinrich and Janovská, Dagmar and Yazıcı, Mustafa Atilla and Çakmak, İsmail and Gözüaçık, Devrim (2019) Minor cereals exhibit superior antioxidant effects on human epithelial cells compared to common wheat cultivars. Journal of Cereal Science, 85 . pp. 143-152. ISSN 0733-5210 (Print) 1095-9963 (Online)

Akpınar, Bala Anı and Avşar, Bihter and Lucas, Stuart J. and Budak, Hikmet (2012) Plant abiotic stress signaling. Plant Signaling & Behavior, 7 (11). pp. 1450-1455. ISSN 1559-2316 (Print) 1559-2324 (Online)

Akpınar, Bala Anı and Budak, Hikmet (2016) Dissecting miRNAs in wheat d genome progenitor, aegilops tauschii. Frontiers in Plant Science, 7 . ISSN 1664-462X (Print) 1664-462X (Online)

Akpınar, Bala Anı and Canlı, Özge and Budak, Hikmet (2015) Zn-deficiency responsive transcripts in Agrostis species revealed by mRNA differential display. In: 8th International Symposium on the Molecular Breeding of Forage and Turf, İstanbul, Turkey

Akpınar, Bala Anı and Kantar, Melda and Budak, Hikmet (2015) Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress. Functional and Integrative Genomics, 15 (5). pp. 587-598. ISSN 1438-793X (Print) 1438-7948 (Online)

Akpınar, Bala Anı and Magni, Federica and Yüce, Meral and Lucas, Stuart J. and Simkova, Hana and Safar, Jan and Vautrin, Sonia and Berges, Helene and Cattonaro, Federica and Dolezel, Jaroslav and Budak, Hikmet (2015) The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements. BMC Genomics, 16 . ISSN 1471-2164

Aktaş, Ethem Utku and Altunel, Haluk and Elalmış, Halil Ibrahim and Nişancı, Songül and Yılmaz, Cemal (2018) Endüstriyel bağlamda yazılım olay kaydı yönetim sürecinin iyileştirilmesi. In: 12. Ulusal Yazılım Mühendisliği Sempozyumu, Istanbul, Turkey (Accepted)

Aktaş, Ethem Utku and Eriş, Mehtap Özaltın and Altunel, Haluk and Yılmaz, Cemal (2019) Yazılım hataları ile ilişkili olmayan olay kayıtlarının analizi ve sınıflandırılması: bir vaka çalışması [Analysis and classification of issue reports not related to software bugs: a case study]. In: 13th Turkish National Software Engineering Symposium, Izmir, Turkey

Aktaş, Ethem Utku and Göktepe, Aziz and Pehlivan, Gamze and Yıldırım, Ümit Ülkem and Yılmaz, Cemal (2017) Olay kayıtları ürün ve platform kodu tespit süreci otomasyonu (The automation of the process of determining product and platform codes for issue records). In: 11th Turkish National Software Engineering Symposium (UYMS 2017), Alanya, Turkey

Aktaş, Ethem Utku and Yılmaz, Cemal (2020) An exploratory study on improving automated issue triage with attached screenshots. In: 42nd ACM/IEEE International Conference on Software Engineering, ICSE-Companion 2020, Virtual, Online

Akyıldız, Taha Atahan and Güzgeren, Can Berk and Yılmaz, Cemal and Savaş, Erkay (2020) MeltdownDetector: a runtime approach for detecting meltdown attacks. Future Generation Computer Systems, 112 . pp. 136-147. ISSN 0167-739X (Print) 1872-7115 (Online)

Alas, Melis and Güngör, Ahmet and Genç, Rükan and Erdem, Emre (2019) Feeling the power: robust supercapacitors from nanostructured conductive polymers fostered with Mn2+ and carbon dots. Nanoscale, 11 (27). pp. 12804-12816. ISSN 2040-3364 (Print) 2040-3372 (Online)

Albayrak, Aydın and Otu, Hasan Hüseyin and Sezerman, Uğur (2010) Clustering of protein families into functional subtypes using relative complexity measure with reduced amino acid alphabets. BMC Bioinformatics, 11 . ISSN 1471-2105

Albayrak, Aydın and Sezerman, Uğur (2012) Discrimination of thermophilic and mesophilic proteins using reduced amino acid alphabets with n-grams. Current Bioinformatics, 7 (2). pp. 152-158. ISSN 1574-8936

Alizadeh, Farid and Noyan, Nilay and Eckstein, Jonathan and Rudolf, Gabor (2008) Arrival rate approximation by nonnegative cubic splines. Operations Research, 56 (1). 140- 156. ISSN 0030-364X (Print) 1526-5463 (Online)

Alpkan, Lütfihak and Bulut, Çağrı and Günday, Gürhan and Ulusoy, Gündüz and Kılıç, Kemal (2009) Organizational support for intrapreneurship and its interaction with human capital to enhance innovative performance. [Working Paper / Technical Report] Sabanci University ID:SU_FENS_2009/0010

Alptekin, Burcu and Budak, Hikmet (2017) Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors. Functional & Integrative Genomics, 17 (2-3). pp. 171-187. ISSN 1438-793X (Print) 1438-7948 (Online)

Alptekin, Halit and Demir, Simge and Şimşek, Şevval and Yılmaz, Cemal (2020) Towards prioritizing vulnerability testing. In: 20th IEEE International Conference on Software Quality, Reliability, and Security, QRS 2020, Macau, China

Altun, Esra and Aydoğdu, Mehmet Onur and Koç, Fatma and Kutlu, Özlem and Gözüaçık, Devrim and Yücel, Sevil and Gündüz, Oğuzhan (2018) Amoxicillin loaded hollow microparticles in the treatment of osteomyelitis disease using single-nozzle electrospinning. BioNanoScience, 8 (3). pp. 790-801. ISSN 2191-1630 (Print) 2191-1649 (Online)

Arachiche, Amal and Gözüaçık, Devrim (2015) Regulation of autophagy in health and disease. In: Fuentes, Jose M., (ed.) Toxicity and Autophagy in Neurofegenerative Disorders. Current Topics in Neurotoxicity, 9. Springer, Switzerland, pp. 1-24. ISBN 978-3-319-13938-8 (Print) 978-3-319-13939-5 (Online)

Arıcı, Ece and Yarar Kaplan, Begüm and Mert, Ahmet Musap and Alkan Gürsel, Selmiye and Kınayyiğit, Şölen (2019) An effective electrocatalyst based on platinum nanoparticles supported with graphene nanoplatelets and carbon black hybrid for PEM fuel cells. International Journal of Hydrogen Energy, 44 (27). pp. 14175-14183. ISSN 0360-3199 (Print) 1879-3487 (Online)

Arısan, Elif Damla and Kütük, Özgür and Tezil, Tuğsan and Bodur, Çağrı and Telci, Dilek and Başağa, Hüveyda (2010) Small inhibitor of Bcl-2, HA14-1, selectively enhanced the apoptotic effect of cisplatin by modulating Bcl-2 family members in MDA-MB-231 breast cancer cells. Breast Cancer Research and Treatment, 119 (2). pp. 271-281. ISSN 0167-6806 (Print) 1573-7217 (Online)

Arslan, Mehmet Alper and Başağa, Hüveyda and Göktuna, Serkan İsmail (2005) Signaling pathways as drug targets in cancer. Advances in Molecular Medicine, supplement, 1 (2). pp. 69-74.

Askar, Yimit and Adebali, Ogün and Sancar, Aziz and Jiang, Yuchao (2019) Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs. Nature Communicaitons, 10 (1). ISSN 2041-1723

Atıcı, Ali Can and Yılmaz, Cemal and Savaş, Erkay (2013) An approach for isolating the sources of information leakage exploited in cache-based side-channel attacks. In: IEEE 7th International Conference on Software Security and Reliability-Companion (SERE-C 2013), Gaithersburg, MD

Atıcı, Ali Can and Yılmaz, Cemal and Savaş, Erkay (2018) Cache-timing attacks without a profiling phase. Turkish Journal of Electrical Engineering and Computer Sciences, 26 (4). pp. 1953-1966. ISSN 1300-0632 (Print) 1303-6203 (Online)

Atılgan, Ali Rana and Atılgan, Canan (2012) Local motifs in proteins combine to generate global functional moves. Briefings in Functional Genomics (Sl), 11 (6). pp. 479-488. ISSN 2041-2649 (Print) 2041-2657 (Online)

Atılgan, Ali Rana and Aykut, Ayşe Özlem and Atılgan, Canan (2011) Subtle pH differences trigger single residue motions for moderating conformations of calmodulin. Journal of Chemical Physics, 135 (15). ISSN 0021-9606

Atılgan, Canan and Atılgan, Ali Rana (2009) Perturbation-response scanning reveals ligand entry-exit mechanisms of ferric binding protein. PLoS Computational Biology, 5 (10). pp. 1-14. ISSN 1553-734X

Atılgan, Canan and İnanç, İbrahim and Atılgan, Ali Rana (2012) Effect of van der Waals interaction strength and nanocluster size on the dynamical and mechanical properties of 1,4-cis-polybutadiene melts. In: Materials Research Society Fall Meeting 2011, Boston

Atılgan, Canan and İnanç, İbrahim and Atılgan, Ali Rana (2010) Long-range structural regularities and collectivity of folded proteins. In: 2009 MRS Fall Meeting, Boston, MA

Atılgan, Canan and Liu, Gökşin and Jalalpour, Farzaneh and Ekmen, Erhan and Berksöz, Melike and Atılgan, Ali Rana and Sayers, Zehra (2023) Increased ionic strength triggers multiple conformations in both apo and holo forms of bacterial ferric binding protein. In: Biophysical Society Annual Meeting, San Diego, CA, USA

Atılgan, Canan and Okan, Osman Burak and Atılgan, Ali Rana (2010) How orientational order governs collectivity of folded proteins. Proteins: Structure, Function, Bioinformatics, 78 (16). pp. 3363-3375. ISSN 1097-0134

Atılgan, Canan and Okan, Osman Burak and Atılgan, Ali Rana (2012) Network-based models as tools hinting at nonevident protein functionality. Annual Review of Biophysics, 41 . pp. 205-225. ISSN 1936-122X (Print) 1936-1238 (Online)

Atila, Alptuğ and Halıcı, Zekai and Çadırcı, Elif and Karakuş, Emre and Palabıyık, Şaziye Sezin and Ay, Nuran and Bakan, Feray and Yılmaz, Şahin (2016) Study of the boron levels in serum after implantation of different ratios nano-hexagonal boron nitride-hydroxy apatite in rat femurs. Materials Science and Engineering: C, 58 . pp. 1082-1089. ISSN 0928-4931 (Print) 1873-0191 (Online)

Avaz, Merve Senem and Oğuz, Oğuzhan and Kurt, Hasan and Menceloğlu, Yusuf Z. and Atılgan, Canan (2017) Soft segment length controls morphology of poly(ethylene oxide) based segmented poly(urethane-urea) copolymers in a binary solvent. Computational Materials Science, 138 . pp. 58-69. ISSN 0927-0256 (Print) 1879-0801 (Online)

Avşar, Bihter and Esmaeilialiabadi, Danial and Yousefnezhad, Reza and Esmaeili Aliabadi, Edris (2019) OP-01 academic presenter: a new storytelling presentation software for academic purposes. Turkish Journal of Biochemistry, 43 (S4). p. 18. ISSN 0250-4685 (Print) 1303-829X (Online)

Avşar, Bihter and Karmous, Ines and Çolak, Ersoy and Sayers, Zehra (2016) A comparative study of gamma subunits of A. thaliana and O. sativa. In: 60th Annual Meeting of the Biophysical-Society, Los Angeles, CA

Avşar, Bihter and Sayers, Zehra (2017) Homology modeling and characterization studies on gamma subunits of heterotrimeric G proteins in Oryza sativa and A. thaliana. In: 42nd Congress of the Federation-of-European-Biochemical-Societies (FEBS) on From Molecules to Cells and Back, Jerusalem, Israel

Avşar, Bihter and Sayers, Zehra (2016) Structural studies on gamma subunits of heterotrimeric G proteins in Oryza sativa. In: FEBS Congress 2016, Ephesus, Kuşadası Turkey (Accepted)

Avşar Esmaeilialiabadi, Bihter and Sadeghi, Sahl and Turkec, Aydın and Lucas, Stuart J. (2020) Identification and quantitation of genetically modified (GM) ingredients in maize, rice, soybean and wheat-containing retail foods and feeds in Turkey. Journal of Food Science and Technology, 57 (2). pp. 787-793. ISSN 0022-1155 (Print) 0975-8402 (Online)

Avşar Esmaeilialiabadi, Bihter and Zhao, Yuhai and Li, Wenhong and Lukiw, Walter J. (2020) Atropa belladonna expresses a microRNA (aba-miRNA-9497) highly homologous to homo sapiens miRNA-378 (hsa-miRNA-378); both miRNAs target the 3'-untranslated region (3'-UTR) of the mRNA encoding the neurologically relevant, zinc-finger transcription factor ZNF-691. Cellular and Molecular Neurobiology, 40 (1). pp. 179-188. ISSN 0272-4340 (Print) 1573-6830 (Online)

Aydın, Mehmet Serhat and Kızıltaş, Güllü and Kuloğlu, Büşra (2018) Fabrication of composite bone scaffolds with controlled multi-scale porosity using non-solvent induced phase separation based 3D printing. In: Materials Research Society Fall 2018 Meetings, Boston, USA

Aydın, Mehmet Serhat and Kuloğlu, Büşra and Sipahi, Çağla and Çayır, Berkay and Kızıltaş, Güllü (2018) Integrated design scheme based on mechano-biology and level set based topology optimization for bone scaffolds. In: Materials Research Society Fall 2018 Meetings, Boston, USA

Aydın, Nursen and Birbil, Ş. İlker and Frenk, Hans and Noyan, Nilay (2013) Single-leg airline revenue management with overbooking. Transportation Science, 47 (4). pp. 560-583. ISSN 0041-1655 (Print) 1526-5447 (Online)

Aydoğan, Eda and Martinez, Enrique and March, Katia and El-Atwani, Osman and Krumwiede, David and Hosemann, Peter and Saleh, Tarik and Maloy, Stuart (2019) α′ formation kinetics and radiation induced segregation in neutron irradiated 14YWT nanostructured ferritic alloys. Scientific Reports, 9 (1). ISSN 2045-2322

Aydoğan, Eda and Rietema, Connor J. and Carvajal-Nunez, Ursula and Vogel, Sven C. and Li, Meimei and Maloy, Stuart A. (2019) Effect of high-density nanoparticles on recrystallization and texture evolution in ferritic alloys. Crystals, 9 (3). ISSN 2073-4352

Aydoğdu, Mehmet Onur and Chou, Joshua and Altun, Esra and Ekren, Nazmi and Çakmak, Selami and Eroğlu, Mehmet and Osman, Asıla A. and Kutlu, Özlem and Toksoy Öner, Ebru and Avşar, Gülben and Oktar, Faik Nüzhet and Yılmaz, İsmail and Gündüz, Oğuzhan (2019) Production of the biomimetic small diameter blood vessels for cardiovascular tissue engineering. International Journal of Polymeric Materials and Polymeric Biomaterials, 68 (5). pp. 243-255. ISSN 0091-4037 (Print) 1563-535X (Online)

Aykut, Ayşe Özlem and Atılgan, Ali Rana and Atılgan, Canan (2013) Designing molecular dynamics simulations to shift populations of the conformational states of calmodulin. PLoS Computational Biology, 9 (12). ISSN 1553-734X

Aykut, Ayşe Özlem and Atılgan, Ali Rana and Atılgan, Canan (2011) Molecular recognition mechanisms of calmodulin examined by perturbation-response scanning. In: 2010 MRS Fall Meeting, Boston, Massachusetts

Aytun, Taner and Turak, Ayşe Zeren and Baikie, Iain D. and Halek, Grzegorz and Ow-Yang, Cleva W. (2012) Solution-processed LiF for work function tuning in electrode bilayers. Nano Letters, 12 (1). pp. 39-44. ISSN 1530-6984 (print) ; 1530-6992 (online)

Azeemi, Rehman Yousuf and Erğun, Rıdvan and Taşdemir, Adnan and Alkan Gürsel, Selmiye and Yürüm, Alp (2019) A simple spray assisted method to fabricate high performance layered graphene/silicon hybrid anodes for lithium-ion batteries. International Journal of Hydrogen Energy, 44 (36). pp. 20267-20277. ISSN 0360-3199 (Print) 1879-3487 (Online)

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Bağcı, S. A. and Ekiz, H. and Yılmaz, A. and Çakmak, İsmail (2007) Effects of zinc deficiency and drought on grain yield of field-grown wheat cultivars in Central Anatolia. Journal of agronomy and crop science, 193 (3). pp. 198-206. ISSN 0931-2250

Bakan, Feray (2018) Gene delivery by hydroxyapatite and calcium phosphate nanoparticles: a review of novel and recent applications. In: Thirumalai, Jagannathan, (ed.) Hydroxyapatite: Advances in Composite Nanomaterials, Biomedical Applications and Its Technological Facets. IntechOpen, London, UK, pp. 157-176. ISBN 978-953-51-3804-4 (Print) 978-953-51-3805-1 (Online)

Bakan, Feray and Çokol Çakmak, Melike and Sezen, Meltem and Çelik, Elif and Khan, Zaeema (2018) Direct focused ion litography of biphasic calcium phosphate (BCP) bioceramics surfaces. In: 19th International Metallurgy and Materials Congress (IMMC 2018), Istanbul, Turkey

Bakan, Feray and Kara, Göknur and Çokol Çakmak, Melike and Çokol, Murat and Denkbaş, Emir Baki (2017) Synthesis and characterization of amino acid-functionalized calcium phosphate nanoparticles for siRNA delivery. Colloids and Surfaces B: Biointerfaces, 158 . pp. 175-181. ISSN 0927-7765 (Print) 1873-4367 (Online) Published Online First http://dx.doi.org/10.1016/j.colsurfb.2017.06.028

Bakan, Feray and Sezen, Meltem and Göncü, Yapıncak and Ay, Nuran (2015) Electrophoretic coating of hydroxyapatite-boron nitride nanocomposites on titanium implants. In: NanoTech Conference 2015, TechConnect, Washington, DC

Bakan, Feray and Sezen, Meltem and Göncü, Yapıncak and Ay, Nuran and Geçgin, Merve (2015) The effect of sintering conditions on the formation of hydroxyapatite-boron nitride nanocomposites. In: NanoTech Conference 2015, TechConnect, Washington, DC

Bakhtiari, Rokhsareh and Ghobadi, Sajjad and Gullüoğlu, Esma N. and Işıkel Şanlı, Lale and Alkan Gürsel, Selmiye and Özden Yenigün, Elif (2017) Macroscopic assembly of flexible and strong green graphene fibres. RSC Advances, 7 (43). pp. 26735-26744. ISSN 2046-2069

Bakır-Güngör, Burcu and Baykan, B. and İşeri, S. Uğur and Tuncer, F. N. and Sezerman, Uğur (2013) Identifying SNP targeted pathways in partial epilepsies with genome-wide association study data. Epilepsy Research, 105 (1-2). pp. 92-102. ISSN 0920-1211 (Print) 1872-6844 (Online)

Bakır-Güngör, Burcu and Egemen, Ece and Sezerman, Uğur (2014) PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data. Bioinformatics, 30 (9). pp. 1287-1289. ISSN 1367-4803 (Print) 1460-2059 (Online)

Bakır-Güngör, Burcu and Sezerman, Uğur (2013) The identification of pathway markers in intracranial aneurysm using genome-wide association data from two different populations. PLoS One, 8 (3). ISSN 1932-6203

Bakış, Yasin and Otu, Hasan H. and Taşçı, Nivart and Meydan, Cem and Bilgin, Neşe and Yüzbaşıoğlu, Sırrı and Sezerman, Uğur (2013) Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure. BMC Bioinformatics, 14 . ISSN 1471-2105

Bakış, Yasin and Sezerman, Uğur and Babaç, M. Tekin and Meydan, Cem (2009) Optimization of morphological data in numerical taxonomy analysis using genetic algorithms feature selection method. In: 11th Genetic and Evolutionary Computation Conference, GECCO 2009, Montreal, Québec, Canada

Baloğlu, Çetin and Baysal, Canan and Koch, Michel and Taralp, Alpay (2005) Influence of Ph on the thermal gelation of food proteins modeled by a variable pD NMR study of lysozyme in D20. Abstracts of Papers of the American Chemical Society, 229 . U49-U49. ISSN 0065-7727

Baloğlu, Çetin and Baysal, Canan and Koch, Michel and Taralp, Alpay (2005) Protein gelation impeded in the presence of vitamins: a kinetic study using NMR. Abstracts of Papers of the American Chemical Society, 229 . U49-U49. ISSN 0065-7727

Baloğlu, Çetin and Baysal, Canan and Koch, Michel H. J. and Taralp, Alpay (2005) Food stability examined at the level of protein structure: NMR and molecular dynamics study of an egg-white protein. Abstracts of Papers of the American Chemical Society, 229 . U62-U62. ISSN 0065-7727

Barak, Melike and Sheibani Aghdam, Araz and Seviniş, Emine Billur and Ünal, Serkan and Cebeci, Fevzi Çakmak (2021) Layer-by-layer assembly of nanofilms from colloidally stable amine-functionalized silica nanoparticles. Colloids and Surfaces A: Physicochemical and Engineering Aspects, 630 . ISSN 0927-7757 (Print) 1873-4359 (Online)

Barin, Martin and Erdem, Esra and Inoue, Katsumi and Oetsch, Johannes and Puhrer, Jorg and Tompits, Hans and Yılmaz, Cemal (2012) Event-sequence testing using answer-set programming. (Accepted)

Bateni, Ali and Erdem, Emre and Hassler, Wolfgang and Somer, Mehmet (2019) High-quality MgB2 nanocrystals synthesized by using modified amorphous nano-boron powders: study of defect structures and superconductivity properties. AIP Advances, 9 (4). ISSN 2158-3226

Bayazıt, Mustafa Kemal (2019) Evaluating the reactivity superiority of two different single-walled carbon nanotube anions using an anhydride electrophile. Hacettepe Journal of Biology and Chemistry, 47 (1). pp. 107-114. ISSN 1303-5002

Bayraktar, Öznur and Gözüaçık, Devrim (2018) The crosstalk between miRNAs and autophagy in cancer progression. In: Fayyaz, Sundas and Farooqi, Ammad Ahmad, (eds.) Recent Trends in Cancer Biology: Spotlight on Signaling Cascades and microRNAs. Springer International Publishing, USA, pp. 279-291. ISBN 978-3-319-71552-0 (Print) 978-3-319-71553-7 (Online)

Bayraktar, Öznur and Oral, Özlem and Kocatürk, Nur Mehpare and Akkoç, Yunus and Eberhart, Karin and Koşar, Ali and Gözüaçık, Devrim (2016) IBMPFD disease-causing mutant VCP/p97 proteins are targets of autophagic-lysosomal degradation. PLoS One, 11 (10). ISSN 1932-6203

Bayram Akçapınar, Günseli and Gül, Özgür and Sezerman, Uğur (2012) From in silico to in vitro: modelling and production of trichoderma reesei endoglucanase 1 and its mutant in pichia pastoris. Journal of Biotechnology, 159 (1-2). pp. 61-68. ISSN 0168-1656 (print) ; 1873-4863 (online)

Berktaş, İlayda and Hezarkhani, Marjan and Haghighi Poudeh, Leila and Saner Okan, Burcu (2020) Recent developments in the synthesis of graphene and graphene-like structures from waste sources by recycling and upcycling technologies: a review. Graphene Technology . ISSN 2365-6301 (Print) 2365-631X (Online) Published Online First http://dx.doi.org/10.1007/s41127-020-00033-1

Bharadwaj, Shiv Kumar and Mitchell, Robert J. and Qureshi, Anjum and Kolkar Mohammed, Javed Hussain Niazi (2017) Toxicity evaluation of e-juice and its soluble aerosols generated by electronic cigarettes using recombinant bioluminescent bacteria responsive to specific cellular damages. Biosensors and Bioelectronics, 90 . pp. 53-60. ISSN 0956-5663 (Print) 1873-4235 (Online)

Bilen, Hakan and Hocaoğlu, Muhammet Ali and Baran, Eray Abdurrahman and Ünel, Mustafa and Gözüaçık, Devrim (2009) Novel parameter estimation schemes in microsystems. In: IEEE International Conference on Robotics and Automation, Kobe, Japan

Bilge, Kaan and Başer, Gülnur and Papila, Melih (2012) Effect of TEX on the strength and failure envelopes of non-crimp glass fiber composites. In: 15th European Conference on Composite Materials (ECCM15), Venice, Italy

Bilge, Kaan and Özden Yenigün, Elif and Şimşek, Eren and Menceloğlu, Yusuf Z. and Papila, Melih (2011) Strength of hybrid composites reinforced with surface modified polymer/MWCNTs nano-composite interlayers. In: 18th International Conference on Composite Materials (ICCM18), Jeju Island, Korea

Bilge, Kaan and Papila, Melih (2014) Interlayer toughening mechanisms of composite materials. In: Qin, Qinghua and Ye, Jianqiao, (eds.) Toughening Mechanisms in Composite Materials. Elsevier - Woodhead Publishing, Amsterdam, Netherlands. ISBN 9781782422792 (Accepted)

Bilge, Kaan and Yorulmaz, Yelda and Javanshour, Farzin and Ürkmez, Ayça and Yılmaz, Bengisu and Şimşek, Eren and Papila, Melih (2017) Synergistic role of in-situ crosslinkable electrospun nanofiber/epoxy nanocomposite interlayers for superior laminated composites. Composites Science and Technology, 151 . pp. 310-316. ISSN 0266-3538 (Print) 1879-1050 (Online)

Bilgin, Orhan and Çetinoğlu, Özlem and Oflazer, Kemal (2004) Morphosemantic relations in and across wordnets: a preliminary study based on Turkish. In: Proceedings of the Second Global WordNet Conference (GWC 2004),, Masaryk, Czech Republic

Birbil, Ş. İlker and Frenk, Hans and Gromicho, Joaquim A. S. and Zhang, Shuzhong (2014) A network airline revenue management framework based on decomposition by origins and destinations. Transportation Science, 48 (3). pp. 313-333. ISSN 0041-1655 (Print) 1526-5447 (Online)

Birbil, Ş. İlker and Frenk, J.B.G. and Kaynar, Bahar and Noyan, Nilay (2009) Risk measures and their applications in asset management. In: Gregoriou, Greg N., (ed.) The VaR Implementation Handbook: Financial Risk and Applications in Asset Management, Measurement, and Modeling. The McGraw-Hill Companies, Columbus, Ohio, pp. 311-338. ISBN 9780071615136

Birinci, Yelda and Kolkar, Javed and Çetin, Öznur and Başağa, Hüveyda (2020) Quercetin in the form of a nano-antioxidant (QTiO(2)) provides stabilization of quercetin and maximizes its antioxidant capacity in the mouse fibroblast model. Enzyme and Microbial Technology, 138 . ISSN 0141-0229 (Print) 1879-0909 (Online)

Birkan, Burak and Heves, Emre and Köroğlu, Bülent and Fındık, Ceyhun and Sarısu, Hikmet and Düzgören, Hasan Erol and Özgüz, Volkan Hüsnü (2012) Sabanci University Nanotechnology Research and Application Center: an experience in building a multi-disciplinary research facility overseas. In: 19th Biennial University/Government/Industry, Micro/Nano Symposium (UGIM 2012), Berkeley, CA, USA

Bodur, Çağrı and Başağa, Hüveyda (2012) Bcl-2 inhibitors: emerging drugs in cancer therapy. Current Medicinal Chemistry (CMC), 19 (12). pp. 1804-1820. ISSN 0929-8673

Bodur, Çağrı and Kütük, Özgür and Karslı, Gizem and Isimjan, Tayirjan T. and Harrison, Paul and Başağa, Hüveyda (2013) Pramanicin analog induces apoptosis in human colon cancer cells: critical roles for Bcl-2, Bim, and p38 MAPK signaling. PLoS One, 8 (2). ISSN 1932-6203

Bodur, Çağrı and Kütük, Özgür and Tezil, Tuğsan and Başağa, Hüveyda (2012) Inactivation of Bcl-2 through I kappa B kinase (IKK)-dependent phosphorylation mediates apoptosis upon exposure to 4-hydroxynonenal (HNE). Journal of Cellular Physiology, 227 (11). pp. 3556-3565. ISSN 0021-9541

Bodur, Çağrı and Yılmaz, Sinem and Kütük, Özgür and Başağa, Hüveyda (2007) HNE (4-hydroxynonenal ) induces apoptosis via mitochondrial pathway with the involvement of Bcl-2 family members. In: 15th Euroconference on Apoptosis, Portorož, Slovenia

Bonchi, Francesco and Malin, Bradley and Saygın, Yücel (2008) Recent advances in preserving privacy when mining data. Data and Knowledge Engineering Journal, 65 (issue ). pp. 1-4. ISSN 0169-023X

Bonchi, Francesco and Saygın, Yücel and Verykios, Vassilis and Atzori, Maurizio and Goukalas, Aris and Kaya, Volkan and Savaş, Erkay (2008) Privacy in spatiotemporal data mining. In: Giannotti, Fosca and Pedreschi, Dino, (eds.) Mobility, data mining, and privacy: geographic knowledge discovery. Springer Heidelberg, Berlin, pp. 297-333. ISBN 9783540751762

Boyd, Laura Susan and Gözüaçık, Devrim and Joubert, Anna Margaretha (2018) The in vitro effects of a novel estradiol analog on cell proliferation and morphology in human epithelial cervical carcinoma. Cellular & Molecular Biology Letters, 23 . ISSN 1425-8153 (Print) 1689-1392 (Online)

Brown, David K. and Penkler, David L. and Amamuddy, Olivier Sheik and Ross, Caroline and Atılgan, Ali Rana and Atılgan, Canan and Bishop, Özlem Taştan (2017) MD-TASK: a software suite for analyzing molecular dynamics trajectories. Bioinformatics, 33 (17). pp. 2768-2771. ISSN 1367-4803 (Print) 1460-2059 (Online)

Budak, Hikmet (2012) Plant abiotic stress signalling. (Accepted)

Budak, Hikmet and Akpınar, Bala Anı (2015) Plant miRNAs: biogenesis, organization and origins. Functional and Integrative Genomics, 15 (5). pp. 523-531. ISSN 1438-793X (Print) 1438-7948 (Online)

Budak, Hikmet and Bulut, Reyyan Fatima and Kantar, Melda and Alptekin, Burcu (2015) MicroRNA nomenclature and the need for a revised naming prescription. Briefings in Functional Genomics (Sl) . ISSN 2041-2649 (Print) 2041-2657 (Online)

Budak, Hikmet and Hussain, Babar and Khan, Zaeema and Öztürk, Neslihan Z. and Ullah, Naimat (2015) From genetics to functional genomics: improvement in drought signaling and tolerance in wheat. Frontiers in Plant Science, 6 . ISSN 1664-462X (Print) 1664-462X (Online)

Budak, Hikmet and Kantar, Melda (2013) New wheat micro RNA using whole genome sequences. (Accepted)

Budak, Hikmet and Kantar, Melda and Bulut, Reyyan Fatima and Akpınar, Bala Anı (2015) Stress responsive miRNAs and isomiRs in cereals. Plant Science, 235 . pp. 1-13. ISSN 0168-9452

Budak, Hikmet and Kantar, Melda and Yucebilgili, Kuaybe (2013) Drought tolerance in modern and wild wheat. Scientific World Journal . ISSN 1537-744X

Bülbül, Gonca and Liu, Gökşin and Vithalapur, Namrata Rao and Atılgan, Canan and Sayers, Zehra and Pourmand, Nader (2019) Employment of iron-binding protein from Haemophilus influenzae in functional nanopipettes for iron monitoring. ACS Chemical Neuroscience (SI), 10 (4). pp. 1970-1977. ISSN 1948-7193 (Print) 1948-7193 (Online)

Büyükbayrak, Hakan and Yanıkoğlu, Berrin and Erçil, Aytül (2007) Online handwritten mathematical expression recognition. In: Document Recognition and Retrieval XIV: IS&T/SPIE International Symposium on Electronic Imaging (SPIE 2007), San Jose, California, USA

Büyükbayrak, Hakan and Yanıkoğlu, Berrin and Erçil, Aytül (2006) Online handwritten mathematical expression recognition = Çevrimiçi elle yazılmış matematiksel ifade tanıma. In: Sinyal İşleme ve İletişim Uygulamaları Kurultayı (SIU 2006), Antalya, Turkey

C

Can, Faruk and Akkaş Moradi, Tuğçe and Şakar, Elif Hazal and Uzun, Lokman and Özaydın İnce, Gözde (2022) Development of molecularly imprinted polymer-based FET biosensor via oxidative chemical vapor deposition. In: 16th Nanoscience and Nanotechnology Conference (NanoTR-16), Ankara, Turkey

Can, Faruk and Akkaş Moradi, Tuğçe and Şakar, Elif Hazal and Uzun, Lokman and Özaydın İnce, Gözde (2022) Oxidative chemical vapor deposition (oCVD) synthesis of molecularly imprinted polypyrrole nanotube for the detection of CA-125 protein. In: 2022 MRS Fall Meeting & Exhibit, Virtual

Can, Hatice and Kaçar, Gökhan and Atılgan, Canan (2009) Surfactant formation efficiency of fluorocarbon-hydrocarbon oligomers in supercritical CO2. Journal of Chemical Physics, 131 (12). ISSN 0021-9606

Castillo, lmudena and Budak, Hikmet and Varshney, Rajeev K. and Dorado, Gabriel and Graner, Andreas and Hernandez, Pilar (2008) Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biology, 8 (97). ISSN 1471-2229

Chelliah, Pandian and Deniz, A. and Kuelen, C. and Bektaş, Gökhan and Boz, Talha and Melemez, Fazlı Fatih and Öztürk, Cem and Suleman, A. and Yıldız, Mehmet (2013) Simulation studies of spectral subtraction based temperature compensation of FBG sensor for structural health monitoring based on principal component analysis. In: 9th International Workshop on Structural Health Monitoring (IWSHM 2013), Stanford, CA

Chouhan, Raghuraj Singh and Kolkar Mohammed, Javed Hussain Niazi and Qureshi, Anjum (2013) E. coli-quantum dot bioconjugates as whole-cell fluorescent reporters for probing cellular damage. Journal of Materials Chemistry B, 1 (21). pp. 2724-2730. ISSN 2050-7518 (Print) 2050-750X (Online)

Chouhan, Raghuraj Singh and Kolkar Mohammed, Javed Hussain Niazi and Qureshi, Anjum (2014) Quantum dots conjugated E. coli living cells as fluorescent reporters to detect cytotoxicity of chemicals. In: Dinçer, İbrahim and Midilli, Adnan and Küçük, Haydar, (eds.) Progress in Exergy, Energy, and the Environment. Springer, Switzerland, pp. 471-475. ISBN 978-3-319-04680-8 (Print) 978-3-319-04681-5 (Online)

D

Dağdeviren, Canan and Papila, Melih (2010) Dielectric behavior characterization of a fibrous-ZnO/PVDF nanocomposite. Polymer Composites, 31 (6). pp. 1003-1010. ISSN 0272-8397

Daş, Elif and Alkan Gürsel, Selmiye and Işıkel Şanlı, Lale and Bayrakçeken Yurtcan, Ayşe (2016) Comparison of two different catalyst preparation methods for graphene nanoplatelets supported platinum catalysts. International Journal of Hydrogen Energy, 41 (23). pp. 9755-9761. ISSN 0360-3199 (Print) 1879-3487 (Online)

Daş, Elif and Yarar Kaplan, Begüm and Alkan Gürsel, Selmiye and Bayrakçeken Yurtcan, Ayşe (2019) Graphene nanoplatelets-carbon black hybrids as an efficient catalyst support for Pt nanoparticles for polymer electrolyte membrane fuel cells. Renewable Energy, 139 . pp. 1099-1110. ISSN 0960-1481 (Print) 1879-0682 (Online)

David, Iulia Gabriela and Bizgan, Ana-Maria Cristina and Popa, Dana Elena and Buleandra, Mihaela and Moldovan, Zenovia and Badea, Irinel Adriana and Tekiner, Tuğçe Ayça and Başağa, Hüveyda and Ciucu, Anton A. (2015) Rapid determination of total polyphenolic content in tea samples based on caffeic acid voltammetric behaviour on a disposable graphite electrode. Food Chemistry, 173 . pp. 1059-1065. ISSN 0308-8146 (Print) 1873-7072 (Online)

Demir, Emrah and Hayat Soytaş, Serap and Demir-Çakan, Rezan (2019) Bismuth oxide nanoparticles embedded carbon nanofibers as self-standing anode material for Na-ion batteries. Solid State Ionics, 342 . ISSN 0167-2738 (Print) 1872-7689 (Online)

Demir, Mustafa Muammer and Erman, Burak (2002) Dimensions of polystyrene particles deposited on mica from dilute cyclohexane solution at different temperatures. Macromolecules, 35 (21). pp. 7986-7992. ISSN 0024-9297 (Print) 1520-5835 (Online)

Demir, Mustafa Muammer and Yilgor, I. and Yilgor, E. and Erman, Burak (2002) Electrospinning of polyurethane fibers. Polymer, 43 (11). pp. 3303-3309. ISSN 0032-3861

Demircan, Özgür and Yılmaz, Çağatay and Kocaman, Esat Selim and Tang, S. and Hamada, H. and Yıldız, Mehmet (2015) Effect of fiber densities on impact properties of biaxial warp-knitted textile composites. Journal of Reinforced Plastics and Composites, 34 (16). pp. 1287-1297. ISSN 0731-6844 (Print) 1530-7964 (Online)

Demiröz, Gülşen and Yılmaz, Cemal (2012) Cost-aware combinatorial interaction testing. In: International Conference on Advances in System Testing and Validation Lifecycle, (Accepted)

Demiröz, Gülşen and Yılmaz, Cemal (2016) Towards automatic cost model discovery for combinatorial interaction testing. In: 9th IEEE International Conference on Software Testing, Verification and Validation Workshops (ICSTW), Chicago, IL

Demiröz, Gülşen and Yılmaz, Cemal (2016) Using simulated annealing for computing cost-aware covering arrays. (Accepted)

Demiröz, Gülşen and Yılmaz, Cemal (2016) Yazılım test maliyet fonksiyonlarının otomatik olarak keşfedilmesi. In: 10. Ulusal Yazılım Mühendisliği Sempozyumu (UYMS'16), Çanakkale, Türkiye

Denizel, Meltem (2003) Minimization of the number of tool magazine setups on automated machines: a lagrangean decomposition approach. Operations Research, 51 (2). pp. 309-320. ISSN 0030-364X (Print) 1526-5463 (Online)

Denizel, Meltem and Altekin, F. Tevhide and Süral, Haldun and Stadtler, Hartmut (2008) Equivalence of the LP relaxations of two strong formulations for the capacitated lot-sizing problem with setup times. Operations Research Spektrum, 30 (4). pp. 773-785. ISSN 0171-6468 (Print) 1436-6304 (Online)

Denizel, Meltem and Üsdiken, Behlül and Tunçalp, Deniz (2003) Drift or shift? Continuity, change, and international variation in knowledge production in OR/MS. Operations Research, 51 (5). pp. 711-720. ISSN 0030-364X (Print) 1526-5463 (Online)

Deretic, Vojo and Prossnitz, Eric and Burge, Mark and Campen, Matthew J. and Cannon, Judy and Liu, Ke Jian and Sklar, Larry A. and Allers, Lee and Garcia, Sally Ann and Baehrecke, Eric H. and Behrends, Christian and Cecconi, Francesco and Codogno, Patrice and Chen, Guang-Chao and Elazar, Zvulun and Eskelinen, Eeva-Liisa and Fourie, Bernard and Gözüaçık, Devrim and Hong, Wanjin and Hotamisliği, Gökhan and Jaattela, Marja and Jo, Eun-Kyeong and Johansen, Terje and Juhasz, Gabor and Kimchi, Adi and Ktistakis, Nicholas and Kroemer, Guido and Mlzushima, Noboru and Münz, Christian and Reggiori, Fulvio and Rubinsztein, David and Ryan, Kevin and Schroder, Kate and Simonsen, Anne and Tooze, Sharon and Vaccaro, Maria I. and Yoshimori, Tamotsu and Yu, Li and Zhang, Hong and Klionsky, Daniel J. (2018) Autophagy, Inflammation, and Metabolism (AIM) Center of Biomedical Research Excellence: supporting the next generation of autophagy researchers and fostering international collaborations. Autophagy . ISSN 1554-8627 (Print) 1554-8635 (Online) Published Online First http://dx.doi.org/10.1080/15548627.2018.1465784

Dönmez, M. Yunus and Demir, Özlem and Özkan, Erdinç and Samaner, Eren and Candan, Ömer Mert and Seymen, Beste and Yılmaz, Cemal (2017) Metin tabanlı test durumlarının kullanacağı yazılım modüllerinin tahmin edilmesi (Predicting the software modules to be exercised by test cases given in natural language). In: 11th Turkish National Software Engineering Symposium (UYMS 2017), Alanya, Turkey

Duckheim, Mathias and Loss, Daniel and Scheid, Matthias and Richter, Klaus and Adagideli, İnanç and Jacquod, Philippe (2010) Spin accumulation in diffusive conductors with Rashba and Dresselhaus spin-orbit interaction. Physical Review B: Condensed Matter and Materials Physics, 81 (8). ISSN 1098-0121

Dumlu, Emine and Yılmaz, Cemal and Cohen, Mayra B. and Porter, Adam (2011) Geribesleme güdümlü adaptif kombinasyonel test etme yaklaşımı. [Working Paper / Technical Report] Sabanci University ID:SU_FENS_2011/0006

Dumlu, Emine and Yılmaz, Cemal and Cohen, Myra B. and Porter, Adam (2011) Feedback driven adaptive combinatorial testing. In: ACM International Symposium on Software Testing and Analysis (ISSTA 2011), Toronto, ON, Canada

Durak, Saliha and Şutova, Hande Eda and Yetişgin, Abuzer Alp and Kutlu, Özlem and Çetinel, Sibel (2021) Potency of SARS-CoV-2 on ocular tissues. In: Rodriguez-Garcia, Alejandro and Hernandez-Camarena, Julio C., (eds.) Infectious Eye Diseases - Recent Advances in Diagnosis and Treatment. Intechopen, United Kingdom. ISBN 978-1-83969-319-9 (Print) 978-1-83969-321-2 (Online)

Durası, İlknur Melis and Dağ, Uğur and Güngör, Burcu Bakır and Erdoğan, Burcu and Kurnaz, Işıl Aksan and Sezerman, Uğur (2011) Identification of transcription factor binding sites in promoter databases. In: 6th International Symposium on Health Informatics and Bioinformatics, (HIBIT 2011), Izmir, Turkey

Durgar El-Kahlout, İlknur and Oflazer, Kemal (2004) Use of wordnet for retrieving words from their meanings. In: 2nd Global WordNet Conference, Masaryk/Czech Rep.

Durmaz Timuçin, Emel and Kuyucak, Serdar and Sezerman, Uğur (2013) Modifying the catalytic preference of tributyrin in Bacillus thermocatenulatus lipase through in-silico modeling of enzyme-substrate complex. Protein Engineering, Design and Selection, 26 (5). pp. 325-333. ISSN 1741-0126 (Print) 1741-0134 (Online)

E

Efe, Mehmet Önder and Ünel, Mustafa and Erbatur, Kemalettin and Kaynak, Ünver and Leblebicioğlu, Kemal (2015) İnsansız hava aracı projeleri ve kaynak sağlayan programlar üzerine (On UAV projects and funding agencies). In: Otomatik Kontrol Türk Milli Komitesi Ulusal Toplantısı (TOK 2015), Pamukkale, Denizli

Ekenel, Hazım Kemal and Bilgin, Seyfettin Yasin and Eden, İbrahim and Kirişci, Meltem and Erdoğan, Hakan and Erçil, Aytül (2005) Multimodal person verification from video sequences. In: Special Workshop in Maui (SWIM): Lectures by Masters in Speech Processing, Nagoya/Japan

El-Atwani, Osman and Aytun, Taner and Mutaf, Ömer Faruk and Srot, Vesna and van Aken, Peter A. and Ow-Yang, Cleva W. (2010) Determining the morphology of polystyrene-block-Poly(2-vinylpyridine) micellar reactors for ZnO nanoparticle synthesis. Langmuir, 26 (10). pp. 7431-7436. ISSN 0743-7463

El-Kahlout, Yasser and Kızıltaş, Güllü (2011) Rational interpolation scheme based on Bayesian classifiers for multi-resonance response of radio frequency devices. IET Microwaves, Antennas & Propagation, 5 (5). pp. 576-582. ISSN 1751-8725 (print) 1751-8733 (online)

Elçi, Özgün and Noyan, Nilay (2018) A chance-constrained two-stage stochastic programming model for humanitarian relief network design. Transportation Research Part B: Methodological, 108 . pp. 55-83. ISSN 0191-2615

Elitaş, Meltem (2017) Glioma-makrofaj etkileşiminin tümör kütlesi oluşumuna etkisi. Acıbadem Üniversitesi Sağlık Bilimleri Dergisi . ISSN 1309-470X (Print) 1309-5994 (Online) Published Online First http://acibadem.dergisi.org/uploads/pdf/pdf_AUD_471.pdf

Elitaş, Meltem (2017) Isoniazid killing of mycobacterium smegmatis NADH pyrophosphatase mutant at single-cell level using microfluidics and time-lapse microscopy. Scientific Reports, 7 . ISSN 2045-2322

Elitaş, Meltem (2018) On-chip isoniazid exposure of mycobacterium smegmatis penicillin-binding protein (PBP) mutant using time-lapse fluorescent microscopy. Micromachines, 9 (11). ISSN 2072-666X

Elitaş, Meltem and Sadeghi, Sahl and Birinci, Yelda (2016) Development of microfabricated tools to investigate immune cell-tumor cell interactions. In: Conference Series LLC Joint International Event on 5th European Immunology & Innate Immunity, Berlin, Germany

Elitaş, Meltem and Sadeghi, Sahl and Karamahmutoğlu, Hande and Gözüaçık, Devrim and Turhal, Nazım Serdar (2017) Microfabricated platforms to quantitatively investigate cellular behavior under the influence of chemical gradients. Biomedical Physics and Engineering Express, 3 (3). ISSN 2057-1976

Elitaş, Meltem and Şengül, Esra (2020) Quantifying heterogeneity according to deformation of the U937 monocytes and U937-differentiated macrophages using 3D carbon dielectrophoresis in microfluidics. Micromachines, 11 (6). ISSN 2072-666X

Elitaş, Meltem and Zeinali, Soheila (2016) Modeling and simulation of EGF-CSF-1 pathway to investigate Glioma - Macrophage interaction in brain tumors. International Journal of Cancer Studies & Research (IJCR): Special Issue On "Advances in Brain Cancer Research", 5 . pp. 1-8. ISSN 2167-9118

Emami Tabrizi, Isa and Kefal, Adnan and Seyyed Monfared Zanjani, Jamal and Akalın, Çağdaş and Yıldız, Mehmet (2019) Experimental and numerical investigation on fracture behavior of glass/carbon fiber hybrid composites using acoustic emission method and refined zigzag theory. Composite Structures, 223 . ISSN 0263-8223 (Print) 1879-1085 (Online)

Erbatur, Kemalettin (2015) Fuzzy control of direct drive manipulators. In: Yu, Xinghuo and Efe, Mehmet Önder, (eds.) Recent Advances in Sliding Modes: From Control to Intelligent Mechatronics. Studies in Systems, Decision and Control, 24. Springer, Switzerland, pp. 371-401. ISBN 978-3-319-18289-6 (Print) 978-3-319-18290-2 (Online)

Erbatur, Kemalettin and Ayhan, Ozan (2006) Yer çekimi telafi teknikleri ile iki bacaklı robot yürüyüş kontrolü. In: Otomatik Kontrol Ulusal Toplantısı, Ankara

Erbil, Seçil and Oral, Özlem and Mitou, Geraldine and Kığ, Cenk and Durmaz, Emel and Güven-Maiorov, Emine and Gülaçtı, Ferah and Gökçe, Gökçen and Dengjel, Jön and Sezerman, Uğur and Gözüaçık, Devrim (2016) RACK1 is an interaction partner of ATG5 and a novel regulator of autophagy. Journal of Biological Chemistry, 291 (32). pp. 16753-16765. ISSN 0021-9258 (Print) 1083-351X (Online)

Erdem, Esra and Inoue, Katsumi and Oetsch, Johannes and Pührer, Jörg and Tompits, Hans and Yılmaz, Cemal (2011) Answer-set programming as a new approach to event-sequence testing. In: International Conference on Advances in System Testing and Validation Lifecycle, (Accepted)

Erdöl, Sevim and Ow-Yang, Cleva W. and Sezen, Meltem and Büyükaksoy, Aligül (2018) La0.6 Sr0.4 CoO3 thin film cathodes prepared by polymeric precursors for solid oxid fuel cells. In: IV. International Ceramic, Glass, Porcelain, Enamel, Glaze and Pigment Congress (SERES'18), Eskisehir, Turkey

Erman, Batu and Piepoli, Sofia and Mancini, Erika and Alt, Aaron (2018) (1 July 2018) BTB domain of mouse PATZ1. [Dataset]

Erman, Batu and Piepoli, Sofia and Mancini, Erika and Alt, Aaron (2018) (1 July 2018) Structure of the BTB domain of zebrafish PATZ1. [Dataset]

Erman, Burak (1999) Application of the Gaussian theory of elastomeric networks to native proteins: analysis of fluctuations and the dynamic scattering function. Computational and Theoretical Polymer Science, 9 (3-4). pp. 295-299. ISSN 1089-3156

Ertan, Ünal (2023) Düşük kütleli x-ışını çiftlerinde nötron yıldızları. In: 22. Ulusal Astronomi Kongresi, Ege Üniversitesi, İzmir

Erzurumlu, Yalçın and Aydın, Köse Fadime and Gözen, Oğuz and Gözüaçık, Devrim and Toth, Eric A. and Ballar, Petek (2013) A unique IBMPFD-related P97/VCP mutation with differential binding pattern and subcellular localization. International Journal of Biochemistry and Cell Biology, 45 (4). pp. 773-782. ISSN 1357-2725 (Print) 1878-5875 (Online)

Eskin, Murat Gökhan and Torabfam, Milad and Psillakis, Elefteria and Cincinelli, Alessandra and Kurt, Hasan and Yüce, Meral (2019) Real-time water quality monitoring of an artificial lake using a portable, affordable, simple, arduino-based open source sensor. Environmental Engineering, 6 (1). pp. 7-14. ISSN 1849-4714 (Print) 1849-5079 (Online)

Esmaeilialiabadi, Danial (2018) Carbon capture, utilization and storage in the context of Turkish energy market. [Working Paper / Technical Report] Sabanci University ID:UNSPECIFIED

F

Feyzioğlu, Orhan and Noyan, Nilay (2017) Risk-averse toll pricing in a stochastic transportation network. European Journal of Industrial Engineering, 11 (2). pp. 133-167. ISSN 1751-5254 (Print) 1751-5262 (Online)

Furuncuoğlu Özaltın, Tuğba and Aviyente, Viktorya and Atılgan, Canan and Demirel, Levent (2017) Multiscale modeling of poly(2-isopropyl-2-oxazoline) chains in aqueous solution. European Polymer Journal, 88 . pp. 594-604. ISSN 0014-3057 (Print) 1873-1945 (Online)

G

Gattoufi, Said and Oral, Muhittin and Reisman, Arnold (2004) Data envelopment analysis literature: a bibliography update (1951–2001). Journal of Socio-Economic Planning Sciences, 38 (2-3). pp. 159-229. ISSN 0038-0121

Ghobadi, Sajjad and Mehraeen, Shayan and Bakhtiari, Rokhsareh and Shamloo, Bahar and Sadhu, Veera Bhadraiah and Papila, Melih and Cebeci, Fevzi Çakmak and Alkan Gürsel, Selmiye (2016) PVA/PANI/rGO ternary electrospun mats as metal-free anti-bacterial substrates. RSC Advances, 6 (95). pp. 92434-92442. ISSN 2046-2069 (Print) 2046-2069 (Online)

Gong, Yeming and De Koster, Rene and Frenk, Hans and Gabor, Adriana (2013) Increasing the revenue of self-storage warehouses by facility design. Production and Operations Management, 22 (3). pp. 555-570. ISSN 1059-1478 (Print) 1937-5956 (Online)

Göğüş, Aytaç and Ertek, Gürdal (2012) Statistical scoring algorithm for learning and study skills. In: 3rd International Conference on New Horizons in Education - INTE 2012, Prague, Czech Republic

Göncü, Yapıncak and Geçgin, Merve and Bakan, Feray and Ay, Nuran (2017) Electrophoretic deposition of hydroxyapatite-hexagonal boron nitride composite coatings on Ti substrate. Materials Science and Engineering: C, 79 . pp. 343-353. ISSN 0928-4931 (Print) 1873-0191 (Online)

Gözüaçık, Devrim (2017) Autophagy in health and disease. In: 43rd National Physiology Congress: Turkish Society of Physiological Sciences, Denizli, Turkey

Gözüaçık, Devrim (2011) Autophagy, cell death and disease. In: 4th International Congress of Molecular Medicine, Istanbul, Turkey

Gözüaçık, Devrim (2017) Autophagy: nobel prize and new results. In: 6th International Congress of Molecular Medicine, Istanbul, Turkey

Gözüaçık, Devrim (2016) Novel ATG5 interactors in the control of basic autophagy and mitophagy. In: 41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Turkey

Gözüaçık, Devrim (2012) Otofaji analiz yöntemleri ve uygulama aşamaları. In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) II. Hücre Ölümü Araştırma Teknikleri Teorik Kursu. Eskisehir Osmangazi Üniversitesi Yayınları; 212. Eskisehir Osmangazi Üniversitesi, Eskisehir, pp. 133-146. ISBN 978-975-7936-95-4

Gözüaçık, Devrim (2011) Otofaji analiz yöntemleri ve uygulama aşamaları (Autophagy analysis techniques and applications). In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) Hücre Ölümü Araştırma Teknikleri. Dokuz Eylul University Press, Izmir, pp. 129-141. ISBN 978-975-441-349-6

Gözüaçık, Devrim (2012) Otofaji ve sinyal yolakları. In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) II. Hücre Ölümü Araştırma Teknikleri Teorik Kursu. Eskisehir Osmangazi Üniversitesi Yayınları; 212. Eskisehir Osmangazi Üniversitesi, Eskisehir, pp. 49-60. ISBN 978-975-7936-95-4

Gözüaçık, Devrim (2011) Otofaji ve sinyal yolakları (Autophagy and signaling pathways). In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) Hücre Ölümü Araştırma Teknikleri. Dokuz Eylul University Press, Izmir, pp. 53-61. ISBN 978-975-441-349-6

Gözüaçık, Devrim and Bialik, S. and Raveh, T. and Mitou, Geraldine and Shohat, G. and Sabanay, H. and Mizushima, N. and Yoshimori, T. and Kimchi, A. (2008) DAP-kinase is a mediator of endoplasmic reticulum stress-induced caspase activation and autophagic cell death. Cell Death and Differentiation, 15 (12). pp. 1875-1886. ISSN 1350-9047 / 1476-5403

Gözüaçık, Devrim and Karakaş Schüller, Hacer Ezgi and Akkoç, Yunus and Özata, Başak (2018) Otofaji ve kanser (Autophagy and cancer). In: Baran, Yusuf, (ed.) Kanser Moleküler Biyolojisi. Kısayol Yayıncılık, Ankara, pp. 239-254. ISBN 9786052329306

Gözüaçık, Devrim and Kocatürk, Nur Mehpare (2019) Hücre içi zar sistemleri. In: Beldüz, Ali Osman, (ed.) Hücre Dünyası (Becker's World of the Cell). Palme Yayınevi, Ankara, pp. 314-350. ISBN 978-605-282-303-3

Gözüaçık, Devrim and Yağcı-Acar, Havva Funda and Akkoç, Yunus and Koşar, Ali and Doğan-Ekici, Işın and Ekici, Sinan (2014) Anticancer use of nanoparticles as nucleic acid carriers. Journal of Biomedical Nanotechnology (SI), 10 (9). pp. 1751-1783. ISSN 1550-7033 (Print) 1550-7041 (Online)

Gumerov, Vadim M. and Ortega, Davi R. and Adebali, Ogün and Ulrich, Luke E. and Zhulin, Igor B. (2020) MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems. Nucleic Acid Research, 48 (D1). D459-D464. ISSN 0305-1048 (Print) 1362-4962 (Online)

Gül, Özgür and Calay, Ediz Süha and Sezerman, Uğur and Başağa, Hüveyda and Gürbüz, Yaşar (2007) Sandwich-type, antibody microarrays for the detection and quantification of cardiovascular risk markers. Sensors and actuators. B, Chemical, 125 (2). pp. 581-588. ISSN 0925-4005

Güler, Enver and Sadeghi, Sahl and Alkan Gürsel, Selmiye (2018) Characterization and fuel cell performance of divinylbenzene crosslinked phosphoric acid doped membranes based on 4-vinylpyridine grafting onto poly(ethylene-co-tetrafluoroethylene) films. International Journal of Hydrogen Energy, 43 (16). pp. 8088-8099. ISSN 0360-3199 (Print) 1879-3487 (Online)

Güler, Rıza Alp and Tari, Sibel and Ünal, Gözde (2014) Screened poisson hyperfields for shape coding. SIAM Journal on Imaging Sciences, 7 (4). pp. 2558-2590. ISSN 1936-4954 (Online)

Gülgün, Mehmet Ali and Sturm, Saso and Cannon, Rowland M. (2006) Transient dopant segregation and precipitation in Yttrium-doped Alumina. In: International Microscopy Conference 16, Sapporo, Japan

Günday, Gürhan and Ulusoy, Gündüz and Kılıç, Kemal and Alpkan, Lütfihak (2009) Determining the factor structure of an integrated innovation model. [Working Paper / Technical Report] Sabanci University ID:SU_FENS_2009/0009

Günday, Gürhan and Ulusoy, Gündüz and Kılıç, Kemal and Alpkan, Lütfihak (2009) Effects of innovation types on firm performance. [Working Paper / Technical Report] Sabanci University ID:SU_FENS_2009/0007

Günday, Gürhan and Ulusoy, Gündüz and Kılıç, Kemal and Alpkan, Lütfihak (2009) Innovative capabilities, operations priorities and corporate performance in manufacturing firms. [Working Paper / Technical Report] Sabanci University ID:SU_FENS_2009/0008

Güney, Eda and Egil, Abdurrahim Can and Can, Faruk and Özaydın İnce, Gözde (2022) Photo-initiated chemical vapor deposition of polymer thin films onto electrospun nanofibers for controlled drug release. In: 2022 MRS Fall Meeting & Exhibit, Virtual

Güngel, Hülya and Menceloğlu, Yusuf Z. and Yıldız, Burçin and Akbulut, Özge (2005) Fourier transform infared and 1H nuclear magnetic resonance spectroscopic findings of silicone oil removed from eyes and the relationship of emulsification with retinotomy and glaucoma. Retina-The Journal of Retinal and Vitreous Diseases, 25 (3). p. 332. ISSN 0275-004x

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Hacısalihoğlu, Gökhan and Burton, Amy L. and Gustin, Jeffery L. and Eker, Selim and Asıklı, Safiye and Heybet, Elif Haklı and Öztürk, Levent and Çakmak, İsmail and Yazıcı, Mustafa Atilla and Burkey, Kent O. and Orf, James and Settles, Mark A. (2018) Quantitative trait loci associated with soybean seed weight and composition under different phosphorus levels. Journal of Integrative Plant Biology, 60 (3). pp. 232-241. ISSN 1672-9072 (Print) 1744-7909 (Online)

Hashlamon, Iyad and Gülhan, Mert Mehmet and Ayit, Orhan and Erbatur, Kemalettin (2017) A novel method for slip prediction of walking biped robots. Robotica, 35 (4). pp. 766-786. ISSN 0263-5747 (Print) 1469-8668 (Online)

Haşim, Kazım Ahmet and Kefal, Adnan and Madenci, Erdoğan (2019) Isogeometric plate element for unstiffened and blade stiffened laminates based on refined zigzag theory. Composite Structures, 222 . ISSN 0263-8223 (Print) 1879-1085 (Online)

Heves, Emre and Öztürk, Cem and Gürbüz, Yaşar (2013) Responsivity improvement in PbS colloidal quantum dot photoconductors using colloidal gold nanoparticles. Electronics Letters, 49 (5). pp. 367-368. ISSN 0013-5194 (Print) 1350-911X (Online)

Heves, Emre and Öztürk, Cem and Özgüz, Volkan Hüsnü and Gürbüz, Yaşar (2013) Solution-based PbS photodiodes, integrable on ROIC, for SWIR detector applications. IEEE Electron Device Letters, 34 (5). pp. 662-664. ISSN 0741-3106

Hintoğlu, Ayça Azgın and Saygın, Yücel (2010) Suppressing microdata to prevent classification based inference. VLDB Journal, 19 (3). pp. 385-410. ISSN 1066-8888 (Print) 0949-877X (Online)

Hong, Xing and Lejeune, Miguel A. and Noyan, Nilay (2015) Stochastic network design for disaster preparedness. IIE Transactions (SI), 47 (4). pp. 329-357. ISSN 0740-817X (Print) 1545-8830 (Online)

Hosseinpour Shafaghi, Ali and Rokhsar Talabazar, Farzad and Koşar, Ali and Ghorbani, Morteza (2020) On the effect of the respiratory droplet generation condition on COVID-19 transmission. Fluids, 5 (3). ISSN 2311-5521

Hu, Jinchuan and Li, Wentao and Adebali, Ogün and Yang, Yanyan and Öztaş, Onur and Selby, Christopher P. and Sancar, Aziz (2019) Genome-wide mapping of nucleotide excision repair with XR-seq. Nature Protocols, 14 (1). pp. 248-282. ISSN 1754-2189 (Print) 1750-2799 (Online)

Hussain, Babar and Lucas, Stuart J. and Öztürk, Levent and Budak, Hikmet (2017) Mapping QTLs conferring salt tolerance and micronutrient concentrations at seedling stage in wheat. Scientific Reports, 7 . ISSN 2045-2322

Hussain, Babar and Yüce, Meral and Ullah, Naimat and Budak, Hikmet (2016) Bioconjugated nanomaterials for monitoring food contamination. In: Grumezescu, Alexandru, (ed.) Nanobiosensors. Elsevier, Amsterdam, pp. 93-123. ISBN 9780128043011 (Print) 9780128043721 (Online)

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Ijaz, Aatif and Yağcı, M. Barış and Ow-Yang, Cleva W. and Demirel, A. Levent and Miko, Annamaria (2020) Formation of mesoporous silica particles with hierarchical morphology. Microporous and Mesoporous Materials, 303 . ISSN 1387-1811 (Print) 1873-3093 (Online)

Ilbagi, H. and Rabenstein, F. and Habekuss, A. and Ordon, F. and Citir, A. and Cebeci, O. and Budak, Hikmet (2008) Molecular, serological and transmission electron microscopic analysis of the barley yellow dwarf virus- PAV and the cereal yellow dwarf virus-RPV in canary seed (Phalaris canariensis L.). Cereal Research Communications, 36 (2). pp. 225-234. ISSN 0133-3720 (Print) 1788-9170 (Online)

Inal, A and Gunes, A and Zhang, F and Çakmak, İsmail (2007) Peanut/maize intercropping induced changes in rhizosphere and nutrient concentrations in shoots. Plant physiology and biochemistry, 45 (5). pp. 350-356. ISSN 0981-9428

Işık, Zeynep and Parmaksızoğlu, İskender and Çoruh, Ceyda and Geylan-Su, Y.S. and Cebeci, O. and Beecher, B. and Budak, Hikmet (2007) Organellar genome analysis of rye (Secale cereale) representing diverse geographic regions. Genome, 50 (8). pp. 724-734. ISSN 1480-3321

Işıkel Şanlı, Lale and Bayram, Vildan and Ghobadi, Sajjad and Düzen, Nilay and Alkan Gürsel, Selmiye (2017) Engineered catalyst layer design with graphene-carbon black hybrid supports for enhanced platinum utilization in PEM fuel cell. International Journal of Hydrogen Energy, 42 (2). pp. 1085-1092. ISSN 0360-3199 (Print) 1879-3487 (Online)

Işıkel Şanlı, Lale and Yarar, Begüm and Bayram, Vildan and Alkan Gürsel, Selmiye (2017) Electrosprayed catalyst layers based on graphene-carbon black hybrids for the next-generation fuel cell electrodes. Journal of Materials Science, 52 (4). pp. 2091-2102. ISSN 0022-2461 (Print) 1573-4803 (Online)

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Jafarpour, Mohammad and Sheibani Aghdam, Araz and Koşar, Ali and Cebeci, Fevzi Çakmak and Ghorbani, Morteza (2021) Electrospinning of ternary composite of PMMA-PEG-SiO2 nanoparticles: comprehensive process optimization and electrospun properties. Materials Today Communications, 29 . ISSN 2352-4928

Jafarpour, Mohammad and Sheibani Aghdam, Araz and Talebian Gevari, Moein and Koşar, Ali and Bayazıt, Mustafa Kemal and Ghorbani, Morteza (2021) An ecologically friendly process for graphene exfoliation based on the "hydrodynamic cavitation on a chip" concept. RSC Advances, 11 (29). pp. 17965-17975. ISSN 2046-2069 (Print) 2046-2069 (Online)

Javeed, Arsalan and Yılmaz, Cemal (2015) Combinatorial interaction testing of tangled configuration options. In: IEEE Eighth International Conference on Software Testing, Verification and Validation Workshops (ICSTW 2015), Graz

Jia, Junjun and Ow-Yang, Cleva W. and İnan Akmehmet, Güliz and Nakamura, Shin-ichi and Kato, Kunihisa and Shigesato, Yuzo (2016) Formation of homologous In2O3(ZnO)(m) thin films and its thermoelectric properties. Journal of Vacuum Science and Technology A, 34 (4). ISSN 0734-2101 (Print) 1520-8559 (Online)

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Kantar, Melda and Akpınar, Bala Anı and Valarik, Miroslav and Lucas, Stuart J. and Dolezel, Jaroslav and Hernandez, Pilar and Budak, Hikmet (2012) Subgenomic analysis of microRNAs in polyploid wheat. Functional and Integrative Genomics, 12 (3). pp. 465-479. ISSN 1438-793X (Print) 1438-7948 (Online)

Karabulut, Nermin Pinar and Akhmedov, Murodzhon and Çokol, Murat (2014) A drug similarity network for understanding drug mechanism of action. Journal of Bioinformatics and Computational Biology, 12 (2). ISSN 0219-7200 (Print) 1757-6334 (Online)

Karaca, Esra and Telci, Dilek and Kütük, Özgür and Başağa, Hüveyda (2008) Antiapoptotic mechanism of aven in cancer cells. [Working Paper / Technical Report] Sabanci University ID:SU_FENS_2008/0001

Karakaş, Bahriye and Aka, Yeliz and Giray, Aslı and Temel, Sehime Gulsun and Acikbas, Ufuk and Başağa, Hüveyda and Gul, Ozgur and Kutuk, Ozgur (2021) Mitochondrial estrogen receptors alter mitochondrial priming and response to endocrine therapy in breast cancer cells. Cell Death Discovery, 7 (1). ISSN 2058-7716

Karakaş, Hacer Ezgi and Gözüaçık, Devrim (2014) Autophagy and cancer. Turkish Journal of Biology, 38 (6). pp. 720-739. ISSN 1300-0152 (Print) 1303-6092 (Online)

Karakaş Schüller, Hacer Ezgi and Kim, Junyoung and Park, Juhee and Oh, Jung Min and Choi, Yongjun and Gözüaçık, Devrim and Cho, Yoon-Kyoung (2017) A microfluidic chip for screening individual cancer cells via eavesdropping on autophagy-inducing crosstalk in the stroma niche. Scientific Reports, 7 . ISSN 2045-2322

Karakaya, Nursel and Papila, Melih and Özkoç, Güralp (2020) Overmolded hybrid composites of polyamide-6 on continuous carbon and glass fiber/epoxy composites: 'an assessment of the interface'. Composites Part A: Applied Science and Manufacturing, 131 . ISSN 1359-835X (Print) 1878-5840 (Online)

Karamahmutoğlu, Hande and Altay, Alara and Vural Kaymaz, Sümeyra and Elitaş, Meltem (2020) Quantitative investigation into the influence of intravenous fluids on human immune and cancer cell lines. Scientific Reports, 10 . ISSN 2045-2322

Karamahmutoğlu, Hande and Çetin, Metin and Yağcı, Tamer and Elitaş, Meltem (2018) Behavior of HepG2 liver cancer cells using microfluidic-microscopy: a preliminary study. In: Microfluidics, BioMEMS, and Medical Microsystems XVI, San Francisco, USA

Karimzadehkhouei, Mehrdad and Khalili Sadaghiani, Abdolali and Motezakker, Ahmad Reza and Akgönül, Sarp and Özbey, Arzu and Şendur, Kürşat and Mengüç, M. Pınar and Koşar, Ali (2019) Experimental and numerical investigation of inlet temperature effect on convective heat transfer of gamma-Al2O3/water nanofluid flows in microtubes. Heat Transfer Engineering, 40 (9-10). pp. 738-752. ISSN 0145-7632 (Print) 1521-0537 (Online)

Karimzadehkhouei, Mehrdad and Özbey, Arzu and MacKenzie-Dover, C. and Christy, John R. E. and Sefiane, Khellil and Koşar, Ali (2019) Investigation of single air bubble dynamics and the effect of nanoparticles in rectangular minichannels. Journal of Molecular Liquids, 279 . pp. 510-517. ISSN 0167-7322 (Print) 1873-3166 (Online)

Karimzadehkhouei, Mehrdad and Özbey, Arzu and Sefiane, Khellil and Koşar, Ali (2017) Stick and oscillatory behavior of bubbles due to TiO2 nanoparticle coating in subcooled pool boiling on a wire. Applied Physics Letters, 111 (6). ISSN 0003-6951 (Print) 1077-3118 (Online)

Karimzadehkhouei, Mehrdad and Shojaeian, Mostafa and Şendur, Kürşat and Mengüç, M. Pınar and Koşar, Ali (2017) The effect of nanoparticle type and nanoparticle mass fraction on heat transfer enhancement in pool boiling. International Journal of Heat and Mass Transfer, 109 . pp. 157-166. ISSN 0017-9310 (Print) 1879-2189 (Online)

Karlı, Sezin and Saygın, Yücel (2009) Mining periodic patterns in spatio-temporal sequences at different time granularities. Intelligent Data Analysis, 13 (2). pp. 301-335. ISSN 1088-467X

Karmous, Ines and Çolak, Ersoy and Sayers, Zehra (2016) The structure of the alpha subunit and its role in G protein signaling in plants. In: 41st FEBS Congress, Kuşadası, Turkey

Kebapcı, Hanife and Yanıkoğlu, Berrin and Ünal, Gözde (2010) Image retrieval for identifying house plants. In: Conference on Imaging and Printing in a Web 2.0 World; and Multimedia content Access - Algorithms and Systems IV, San Jose, CA

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Kefal, Adnan and Sohouli, Abdolrasoul and Öterkuş, Erkan and Yıldız, Mehmet and Suleman, Afzal (2019) Topology optimization of cracked structures using peridynamics. Continuum Mechanics and Thermodynamics (SI), 31 (6). pp. 1645-1672. ISSN 0935-1175 (Print) 1432-0959 (Online)

Kefal, Adnan and Tessler, Alexander and Öterkuş, Erkan (2017) An enhanced inverse finite element method for displacement and stress monitoring of multilayered composite and sandwich structures. Composite Structures, 179 . pp. 514-540. ISSN 0263-8223 (Print) 1879-1085 (Online)

Keskin, Nazlı and Deniz, Emre and Eryılmaz, Jitka and Ün, Manolya and Altınuşak, Tuğçe and Erşahin, Tülin and Atalay, Rengül Çetin and Sakaguchi, Shinya and Ellmeier, Wilfried and Erman, Batu (2015) PATZ1 is a DNA damage-responsive transcription factor that inhibits p53 function. Molecular and Cellular Biology, 35 (10). pp. 1741-1753. ISSN 0270-7306 (Print) 1098-5549 (Online)

Khalid, Zoya and Sezerman, Uğur (2014) Interpreting the prevalence of regulatory SNPs in cancers and protein-coding SNPs among non-cancer diseases using GWAS association studies. In: International Conference on Applied Informatics for Health and Life Sciences (AIHLS 2014), Kuşadası, Turkey

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Kınayyiğit, Şölen and Philippot, Karine (2014) Organometallic approach for the synthesis of noble metal nanoparticles: towards application in colloidal and supported nanocatalysis. In: Tao, Franklin, (ed.) Metal Nanoparticles for Catalysis: Advances and Applications. RSC Publishing, London, pp. 47-82. ISBN 978-1-78262-033-4 (Print) 978-1-78262-103-4 (Online)

Kim, Junyoung and Karakaş Schüller, Hacer Ezgi and Gözüaçık, Devrim and Cho, Yoon-Kyoung (2015) Single cell analysis on the role of TGF-β1 in autophagy of tumor cell-interacted stroma fibroblasts. In: 19th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2015), Gyeongju, South Korea

Kippes, Nestor and Debernardi, Juan M. and Vasquez-Gross, Hans A. and Akpınar, Bala Anı and Budak, Hikmet and Kato, Kenji and Chao, Shiaoman and Akhunov, Eduard and Dubcovsky, Jorge (2015) Identification of the VERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia. Proceedings of the National Academy of Sciences, 112 (39). E5401-E5410. ISSN 0027-8424 (Print) 1091-6490 (Online)

Klionsky, Dan J. and Autophagy, Consortium and Gözüaçık, Devrim (2012) Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy, 8 (4). pp. 445-544. ISSN 1554-8627

Klionsky, Daniel J. and Gözüaçık, Devrim and Budak, Hikmet and Autophagy, Consortium (2016) Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy, 12 (1). pp. 1-222. ISSN 1554-8627 (Print) 1554-8635 (Online)

Kloczkowski, A. and Erman, Burak and Mark, J. E. (2002) Effect of non-Gaussian chains on fluctuations of junctions in bimodal networks. Polymer, 43 (8). pp. 2569-2574. ISSN 0032-3861

Kocabaş, Berfu and Coşar, Olgu Çağın and Rostas, Arpad Mihai and Yıldırım, İpek Deniz and Güngör, Ahmet and Erdem, Emre (2024) Advances and challenges in metal oxide–based carbon capture technologies: an overview. In: Sankir, Mehmet and Demirci Sankir, Nurdan, (eds.) Towards Green Hydrogen Generation. Advances in Hydrogen Production and Storage. Wiley-Scrivener Publishing, Beverly, USA, pp. 149-170. ISBN 9781394234080

Kocaman, Esat Selim and Keulen, Casey J. and Akay, Erdem and Yıldız, Mehmet and Türkmen, Halit S. and Suleman, Afzal (2015) An experimental study on the effect of length and orientation of embedded FBG sensors on the signal properties under fatigue loading. Science and Engineering of Composite Materials . ISSN 0792-1233 (Print) 2191-0359 (Online) Published Online First http://dx.doi.org/10.1515/secm-2014-0029

Kocatürk, Nur Mehpare and Akkoç, Yunus and Kığ, Cenk and Bayraktar, Öznur and Gözüaçık, Devrim and Kutlu, Özlem (2019) Autophagy as a molecular target for cancer treatment. European Journal of Pharmaceutical Sciences, 134 . pp. 116-137. ISSN 0928-0987 (Print) 1879-0720 (Online)

Kocatürk, Nur Mehpare and Gözüaçık, Devrim (2018) Crosstalk between mammalian autophagy and the ubiquitin-proteasome system. Frontiers in Cell and Developmental Biology, 6 . ISSN 2296-634X

Kocatürk, Nur Mehpare and Gözüaçık, Devrim (2017) Otofaji ve nörodejeneratif hastalıklar (Autophagy and neurodegenerative diseases). Türkiye Klinikleri Farmakoloji Özel Dergisi (Nörodejeneratif Hastalıklarda Yeni Yaklaşımlar Özel Sayısı), 5 (1). pp. 11-20. ISSN 1304-4257 (Print) 2149-3774 (Online)

Koç, Uğur and Yılmaz, Cemal (2018) Approaches for computing test-case-aware covering arrays. Software Testing, Verification and Reliability, 28 (7). ISSN 0960-0833 (Print) 1099-1689 (Online)

Kolak, O. İlker and Feyzioğlu, Orhan and Birbil, Ş. İlker and Noyan, Nilay and Yalçındağ, Semih (2013) Using emission functions in modeling environmentally sustainable traffic assignment policies. Journal of Industrial and Management Optimization, 9 (2). pp. 341-363. ISSN 1547-5816 (Print) 1553-166X (Online)

Kolak, Orhan İlker and Feyzioğlu, Orhan and Noyan, Nilay (2018) Bi-level multi-objective traffic network optimisation with sustainability perspective. Expert Systems with Applications, 104 . pp. 294-306. ISSN 0957-4174 (Print) 1873-6793 (Online)

Korkmaz, Gözde and Le Sage, Carlos and Tekirdağ, Kumsal Ayşe and Agami, Reuven and Gözüaçık, Devrim (2012) miR-376b controls starvation and mTOR inhibition-related autophagy by targeting ATG4C and BECN1. Autophagy, 8 (2). pp. 165-176. ISSN 1554-8627

Korkmaz, Gözde and Tekirdağ, Kumsal Ayşe and Özturk, Deniz Gülfem and Koşar, Ali and Sezerman, Uğur and Gözüaçık, Devrim (2013) MIR376A is a regulator of starvation-induced autophagy. PLoS One, 8 (12). ISSN 1932-6203

Korkmaz, Ömer and Yılmaz, Cemal (2021) SYSMODIS: a systematic model discovery approach. In: IEEE International Conference on Software Testing, Verification and Validation Workshops (ICSTW), Porto de Galinhas, Brazil

Koşar, Ali and Akbaş, Akın and Şahin, Ö. and Kubilay, Aytaç and Oral, Özlem and Gözüaçık, Devrim (2009) Bubbly cavitating flow generation and investigation of its erosional nature for biomedical applications. In: 2nd Micro and Nano Flows Conference, West London, UK

Koşar, Ali and Şeşen, Muhsincan and Oral, Özlem and İtah, Zeynep and Gözüaçık, Devrim (2011) Bubbly cavitating flow generation and investigation of its erosional nature for biomedical applications. IEEE Transactions on Biomedical Engineering, 58 (5). pp. 1337-1346. ISSN 0018-9294

Kural, Nurçin and Ünlü, Cüneyt and Grupce, Orhideja and Bakan, Feray and Sezen, Meltem (2017) Analysis of deterioration phenomena in a Koran by 19th century Ottoman calligrapher Mehmed Şevki. (Accepted)

Kurt, Hasan and Eyüpoğlu, Alp Ertunga and Sütlü, Tolga and Budak, Hikmet and Yüce, Meral (2019) Plasmonic selection of ssDNA aptamers against fibroblast growth factor receptor. ACS Combinatorial Science, 21 (8). pp. 578-587. ISSN 2156-8952 (Print) 2156-8944 (Online)

Kuzuoğlu, Duygu and Cebeci Yalçınkaya, Özge and Akpınar, Bala Anı and Mitou, Geraldine and Korkmaz, Gözde and Gözüaçık, Devrim and Budak, Hikmet (2012) Autophagy-related gene, TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response. Planta, 236 (4). pp. 1081-1092. ISSN 0032-0935 (Print) 1432-2048 (Online)

Küçükgül, Can and Özler, Saime Burçe and İnci, İlyas and Karakaş, Hacer Ezgi and Irmak, Ster and Gözüaçık, Devrim and Taralp, Alpay and Koç, Bahattin (2015) 3D bioprinting of biomimetic aortic vascular constructs with self-supporting cells. Biotechnology and Bioengineering, 112 (4). pp. 811-821. ISSN 0006-3592 (Print) 1097-0290 (Online)

Küçükgül, Can and Özler, Saime Burçe and Karakaş, Hacer Ezgi and Gözüaçık, Devrim and Koç, Bahattin (2013) 3D hybrid bioprinting of macrovascular structures. In: 3rd ECCOMAS Thematic Conference on Tissue Engineering (ICTE 2013), Leiria, Portugal

Küçükural, Alper and Sezerman, Uğur and Erçil, Aytül (2007) DISCRIMINATION OF NATIVE FOLDS USING NETWORK PROPERTIES OF PROTEIN STRUCTURES. In: APBC 2008, Kyoto JAPAN (Accepted)

Küçükural, Alper and Szilagyi, Andras and Sezerman, Uğur and Zhang, Yang (2011) Protein homology analysis for function prediction with parallel sub-graph isomorphism. In: Lodhi, Huma and Yamanashi, Yoshihiro, (eds.) Chemoinformatics and Advanced Machine Learning Perspectives: Complex Computational Methods and Collaborative Techniques. IGI Global, Hershey, PA, USA, pp. 129-144. ISBN 9781615209118 ; 1615209115

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Sen, Pınar and Akagündüz, Dilan and Sheibani Aghdam, Araz and Cebeci, Fevzi Çakmak and Nyokong, Tebello and Çatal, Tunç (2020) Synthesis of novel schiff base cobalt (II) and iron (III) complexes as cathode catalysts for microbial fuel cell applications. Journal of Inorganic and Organometallic Polymers and Materials, 30 (4). pp. 1110-1120. ISSN 1574-1443 (Print) 1574-1451 (Online)

Seyedmirzaei Sarraf, Seyedali and Rokhsar Talabazar, Farzad and Namlı, İlayda and Maleki, Mohammadamin and Sheibani Aghdam, Araz and Gharib, Ghazeleh and Grishenkov, Dmitry and Ghorbani, Morteza and Koşar, Ali (2022) Fundamentals, biomedical applications and future potential of micro-scale cavitation-a review. Lab on a Chip, 22 (12). pp. 2237-2258. ISSN 1473-0197 (Print) 1473-0189 (Online)

Seyyed Monfared Zanjani, Jamal and Haghighi Poudeh, Leila and Girginer Özünlü, Burcu and Yağcı, Yavuz Emre and Menceloğlu, Yusuf Z. and Saner Okan, Burcu (2020) Development of waste tire-derived graphene reinforced polypropylene nanocomposites with controlled polymer grade, crystallization and mechanical characteristics via melt-mixing. Polymer International, 69 (9). pp. 771-779. ISSN 0959-8103 (Print) 1097-0126 (Onlilne)

Seyyed Monfared Zanjani, Jamal and Saner Okan, Burcu and Menceloğlu, Yusuf Z. (2016) Manufacturing of multilayer graphene oxide/poly(ethylene terephthalate) nanocomposites with tunable crystallinity, chain orientations and thermal transitions. Materials Chemistry and Physics, 176 . pp. 58-67. ISSN 0254-0584 (Print) 1879-3312 (Online)

Seyyed Monfared Zanjani, Jamal and Saner Okan, Burcu and Menceloğlu, Yusuf Z. and Yıldız, Mehmet (2018) Self-healing thermosetting composites: concepts, chemistry and future advances. In: Delville, Marie-Helene and Taubert, Andreas, (eds.) Hybrid Organic‐Inorganic Interfaces: Towards Advanced Functional Materials. Wiley, UK. ISBN 9783527342556 (Print) 9783527807130 (Online)

Seyyed Monfared Zanjani, Jamal and Saner Okan, Burcu and Yılmaz, Çağatay and Menceloğlu, Yusuf Z. and Yıldız, Mehmet (2017) Monitoring the interface and bulk self-healing capability of tri-axial electrospun fibers in glass fiber reinforced epoxy composites. Composites Part A: Applied Science and Manufacturing, 99 . pp. 221-232. ISSN 1359-835X (Print) 1878-5840 (Online)

Sezen, Meltem (2016) Focused ion beams (FIB): novel methodologies and recent applications for multidisciplinary sciences. In: Janeček, Miloš and Kral, Robert, (eds.) Modern Electron Microscopy in Physical and Life Sciences. InTech, Rijeka, Croatia. ISBN 978-953-51-2252-4

Sezen, Meltem and Bakan, Feray (2015) Development of functional surfaces on high density polyethylene (HDPE) via gas assisted etching (GAE) using focused ion beams. (Accepted)

Shadloo, Mostafa Safdari and Yıldız, Mehmet (2011) Numerical modeling of Kelvin-Helmholtz instability using smoothed particle hydrodynamics. International Journal for Numerical Methods in Engineering, 87 (10). pp. 988-1006. ISSN 0029-5981

Shadloo, Mostafa Safdari and Zainali, Amir and Sadek, Samir H. and Yıldız, Mehmet (2011) Improved incompressible smoothed particle hydrodynamics method for simulating flow around bluff bodies. Computer Methods in Applied Mechanics and Engineering, 200 (9-12). pp. 1008-1020. ISSN 0045-7825

Sharani, Baidaa and Emami Tabrizi, Isa and Seyyed Monfared Zanjani, Jamal and Rahimi, Mohammad Naqib and Haghighi Poudeh, Leila and Kefal, Adnan and Yıldız, Mehmet (2020) Damage mechanisms in CFRP/HNT laminates under flexural and in-plane shear loadings using experimental and numerical methods. Composites Part A: Applied Science and Manufacturing, 136 . ISSN 1359-835X (Print) 1878-5840 (Online)

Shawuti, Shalima and Difiglio, Carmine and Esmaeilialiabadi, Danial and Gülgün, Mehmet Ali and Öncel, Çınar and Yeşilyurt, Serhat (2018) Using natural gas as an environmentally sustainable power source with solid oxide fuel cells. [Working Paper / Technical Report] Sabanci University ID:UNSPECIFIED

Sheridan, Patricia Kristine and Gluck, Erich and Guan, Qi and Pickles, Thomas and Balcıoğlu, Ahmet Barış and Benhabib, Beno (2013) The dynamic nearest neighbor policy for the multi-vehicle pick-up and delivery problem. Transportation Research Part A: Policy and Practice, 49 . pp. 178-194. ISSN 0965-8564 (Print) 1879-2375 (Online)

Shojaeian, Mostafa and Karimzadehkhouei, Mehrdad and Koşar, Ali (2017) Experimental investigation on convective heat transfer of non-Newtonian flows of Xanthan gum solutions in microtubes. Experimental Thermal and Fluid Science, 85 . pp. 305-312. ISSN 0894-1777 (Print) 1879-2286 (Online)

Sönmez, Erdal and Cacciatore, Ivana and Bakan, Feray and Türkez, Hasan and Yousef, Mokhtar and Togar, Başak and Di Stefano, Antonio (2015) Toxicity assessment of hydroxyapatite nanoparticles in rat liver cell model in vitro. (Accepted)

Sural, Haldun and Denizel, Meltem and Van Wassenhove, Luk N. (2009) Lagrangean relaxation based heuristics for lot sizing with setup times. European Journal of Operational Research, 194 (1). pp. 51-63. ISSN 0377-2217

Süral, Haldun and Denizel, Meltem and Van Wassenhove, Luk N. (2006) Lagrangean relaxation based heuristics for lot sizing with setup times. [Working Paper / Technical Report] Sabanci University ID:SU_FMAN_2006/0007

T

Tajeddin, Alireza and Mustafaoğlu, Nur and Yapıcı, Murat Kaya (2021) On-chip measurement of pH using a microcantilever: a biomimetic design approach. In: Symposium on Design, Test, Integration & Packaging of MEMS and MOEMS (DTIP), Paris, France

Tamer, Yusuf Talha and Gazsek, Ilona K. and Abdizadeh, Haleh and Batur, Tuğçe and Reynolds, Kimberly and Atılgan, Ali Rana and Atılgan, Canan and Toprak, Erdal (2019) High-order epistasis in catalytic power of dihydrofolate reductase gives rise to a rugged fitness landscape in the presence of trimethoprim selection. Molecular Biology and Evolution, 36 (7). pp. 1533-1550. ISSN 0737-4038 (Print) 1537-1719 (Online)

Tantuğ, A. Cüneyd and Oflazer, Kemal and Adalı, Eşref (2006) Lexical ambiguity resolution for Turkish in direct transfer machine translation models. Lecture Notes in Computer Science, 4263 . pp. 230-238. ISSN 0302-9743

Taş, Mustafa Kemal and Mercan, Hanefi and Demiröz, Gülşen and Kaya, Kamer and Yılmaz, Cemal (2018) Generating cost-aware covering arrays for free. In: 4th International Conference on Tools and Methods of Program Analysis (TMPA 2017), Moscow, Russia

Tekdal, Dilek (2016) Histological analysis of hybrids from vuralia turcica and vicia faba. In: TWAS/BioVisionAlexandria.NXT 2016: Research Ethics and Social Responsibility, Alexandria, Egypt

Tekdal, Dilek and Çetiner, Selim (2012) Isolation and characterization of agrobacterium tumefaciens strains from the artificial lake water. In: 15th European Congress on Biotechnology, Istanbul,Turkey

Tekiner, Hatice and Birbil, Ş. İlker and Bülbül, Kerem (2009) Robust crew pairing for managing extra flights. Computers & Operations Research, 36 (6). pp. 2031-2048. ISSN 0305-0548

Tekiner, Tugce Ayca and Başağa, Hüveyda (2013) Role of microRNA deregulation in breast cancer cell chemoresistance and stemness. Current Medicinal Chemistry, 20 (27). pp. 3358-3369. ISSN 0929-8673 (Print) 1875-533X (Online)

Tekirdağ, Kumsal Ayşe and Gözüaçık, Devrim (2013) Role of miRNAs in the regulation of autophagy. Pakistan Journal of Clinical and Biomedical Research, 1 (2). pp. 6-10.

Tekirdağ, Kumsal Ayşe and Korkmaz, Gözde and Özturk, Deniz Gülfem and Agami, Reuven and Gözüaçık, Devrim (2013) MIR181A regulates starvation- and rapamycin-induced autophagy through targeting of ATG5. Autophagy, 9 (3). pp. 374-385. ISSN 1554-8627 (Print) 1554-8635 (Online)

Tekirdağ, Kumsal Ayşe and Özturk, Deniz Gülfem and Gözüaçık, Devrim (2013) Alteration in autophagic-lysosomal potential during aging and neurological diseases: the microRNA perspective. Current Pathobiology Reports, 1 (4). pp. 1-36. ISSN 2167-485X

Tezil, Tuğsan and Başağa, Hüveyda (2014) Modulation of cell death in age related diseases. Current Pharmaceutical Design, 20 (18). pp. 3052-3067. ISSN 1381-6128 (Print) 1873-4286 (Online)

Tezil, Tuğsan and Bodur, Çağrı and Kütük, Özgür and Başağa, Hüveyda (2012) IKK-beta mediates chemoresistance by sequestering FOXO3; a critical factor for cell survival and death. Cellular Signalling, 24 (6). pp. 1361-1368. ISSN 0898-6568

Tiber, Pınar and Orun, Oya and Nacar, Cevdet and Sezerman, Uğur and Severcan, Feride and Severcan, Mete and Matagne, André and Kan, Beki (2011) Structural characterization of recombinant bovine Go alpha by spectroscopy and homology modeling. Spectroscopy, 26 (4-5). pp. 213-229. ISSN 0712-4813

Timuçin, Ahmet Can and Başağa, Hüveyda (2016) SIRT6 is a positive regulator of aldose reductase expression in U937 and HeLa cells under osmotic stress: in vitro and in silico insights. PLoS One, 11 (8). ISSN 1932-6203

Tiziana, Centofanti and Sayers, Zehra and Cabello-Conejo, Maria Isabel and Kidd, Petra and Nishizawa, Naoko K. and Kakei, Yusuke and Davis, Allen P. and Sicher, Richard C. and Chaney, Rufus L. (2013) Xylem exudate composition and root-to-shoot nickel translocation in Alyssum species. Plant and Soil, 373 (1-2). pp. 59-75. ISSN 0032-079X (Print) 1573-5036 (Online)

Tofighi, Nima and Özbulut, Murat and Yıldız, Mehmet (2015) Deformation of a droplet in couette flow subject to an external electric field simulated using ISPH. In: IV International Conference on Particle-Based Methods: Fundamentals and Applications, Barcelona, Spain

Torun, B. and Kalaycı, M. and Öztürk, L. and Torun, A. and Aydın, M. and Çakmak, İsmail (2003) Differences in shoot boron concentrations, leaf symptoms, and yield of Turkish barley cultivars grown on boron-toxic soil in field. Journal of Plant Nutrition, 26 (9). pp. 1735-1747. ISSN 0190-4167

Toufani, Maryam and Kasap, Sibel and Tufani, Ali and Bakan, Feray and Weber, Stefan and Erdem, Emre (2020) Synergy of nano-ZnO and 3D-graphene foam electrodes for asymmetric supercapacitor devices. Nanoscale, 12 (24). pp. 12790-12800. ISSN 2040-3364 (Print) 2040-3372 (Online)

Turgut, Deniz and Atılgan, Ali Rana and Atılgan, Canan (2010) Assortative mixing in close-packed spatial networks. PLoS One, 5 (12). ISSN 1932-6203

U

Ullah, Naimat and Yüce, Meral and Gökçe, Z. Neslihan Öztürk and Budak, Hikmet (2017) Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species. BMC Genomics, 18 . ISSN 1471-2164

Ulusoy, Gündüz and Günday, Gürhan and Kılıç, Kemal and Alpkan, Lütfihak (2009) An empirical study into the determinants of innovativeness in manufacturing firms. In: 3rd International Conference on Innovation, Technology and Knowledge Economics, Ankara, Turkey

Unver, Turgay and Budak, Hikmet (2009) Virus induced gene silencing, a post transcriptional gene silencing method. International Journal of Plant Genomics, 2009 . ISSN 1687-5370

Unver, Turgay and Türktaş, Mine and Budak, Hikmet (2013) In planta evidence for the involvement of a ubiquitin conjugating enzyme (UBC E2 clade) in negative regulation of disease resistance. Plant Molecular Biology Reporter, 31 (2). pp. 323-334. ISSN 0735-9640 (Print) 1572-9818 (Online)

Uysal, Ebru and Meral, Yüce and Kurt, Hasan (2014) Impacts of carbon nanotubes on biochemical reactions: insight into interaction between carbon nanotubes and DNA polymerase enzyme. In: 16th European Congress on Biotechnology, Edinburgh, Scotland

V

Verykios, V. S. and Elmagarmid, A. K. and Bertino, E. and Saygın, Yücel and Dasseni, E. (2004) Association rule hiding. IEEE Transactions On Knowledge and Data Engineering, 16 (4). pp. 434-447. ISSN 1041-4347

Vestergaard, Bente and Sayers, Zehra (2014) Investigating increasingly complex macromolecular systems with small-angle X-ray scattering. International Union of Crystallography Journal (IUCrJ), 1 (6). pp. 523-529. ISSN 2052-2525

Vural, Esra and Erdoğan, Hakan and Oflazer, Kemal and Yanıkoğlu, Berrin (2004) Türkçe için tablet PC ortamında çevrimiçi yazı tanıma. In: SIU 2004, Kuşadası, Turkey

Vuruşaner, Beyza and Gamba, Paola and Testa, Gabriella and Gargiulo, Simona and Biasi, Fiorella and Zerbinati, Chiara and Iuliano, Luigi and Leonarduzzi, Gabriella and Başağa, Hüveyda and Poli, Giuseppe (2014) Survival signaling elicited by 27-hydroxycholesterol through the combined modulation of cellular redox state and ERK/Akt phosphorylation. Free Radical Biology and Medicine, 77 . pp. 376-385. ISSN 0891-5849 (Print) 1873-4596 (Online)

Vuruşaner, Beyza and Poli, Giuseppe and Başağa, Hüveyda (2012) Tumor suppressor genes and ROS: complex networks of interactions. Free Radical Biology and Medicine, 52 (1). pp. 7-18. ISSN 0891-5849 (print) ; 1873-4596 (online)

Vuruşaner Aktaş, Beyza and Poli, Giuseppe and Başağa, Hüveyda (2012) Survival signals induced by low concentrations of 27-hydroxycholesterol in human monocytic cells via ERK activation. In: Society for Free Radical Research International 16th Biennial Meeting, Imperial College London, UK

W

Wakeel, Abdul and Farooq, Muhammad and Bashir, Khurram and Öztürk, Levent (2018) Micronutrient malnutrition and biofortification: recent advances and future perspectives. In: Hossain, Mohammad Anwar and Kamiya, Takehiro and Burritt, David J. and Tran, Lam-Son Phan and Fujiwara, Toru, (eds.) Plant Micronutrient Use Efficiency: Molecular and Genomic Perspectives in Crop Plants. Elsevier, UK, USA, pp. 225-243. ISBN 9780128122433 (Print) 9780128121047 (Online)

Winterstein, Jonathan P. and Sezen, Meltem and Renik, Aleksander and Carter, C. Barry (2016) Electron microscopy observations of the spinel-forming reaction using MgO nanocubes on Al2O3 substrates. Journal of Materials Science, 51 (1). pp. 144-157. ISSN 0022-2461 (Print) 1573-4803 (Online)

Wurm, J. and Wimmer, M. and Adagideli, İnanç and Richter, K. and Baranger, H. U. (2009) Interfaces within graphene nanoribbons. New Journal of Physics, 11 . ISSN 1367-2630

Y

Yarar Kaplan, Begüm and Haghmoradi, Navid and Biçer, Emre and Merino, Cesar and Alkan Gürsel, Selmiye (2018) High performance electrocatalysts supported on graphene based hybrids for polymer electrolyte membrane fuel cells. International Journal of Hydrogen Energy, 43 (52). pp. 23221-23230. ISSN 0360-3199 (Print) 1879-3487 (Online)

Yarar Kaplan, Begüm and Işıkel Şanlı, Lale and Alkan Gürsel, Selmiye (2017) Flexible carbon–cellulose fiber-based composite gas diffusion layer for polymer electrolyte membrane fuel cells. Journal of Materials Science, 52 (9). pp. 4968-4976. ISSN 0022-2461 (Print) 1573-4803 (Online)

Yavuz, Ahmet Sinan and Sezerman, Uğur (2014) Predicting sumoylation sites using support vector machines based on various sequence features, conformational flexibility and disorder. BMC Genomics, 15 (Supple). ISSN 1471-2164 (Print) 1471-2164 (Online)

Yavuz, Ahmet Sinan and Sözer, Namık Berk and Sezerman, Osman Uğur (2015) Prediction of neddylation sites from protein sequences and sequence-derived properties. BMC Bioinformatics, 16 (Supple). ISSN 1471-2105

Yavuz, Ahmet Sinan and Sözer, Namık Berk and Sezerman, Uğur (2014) Amino acid preferences at neddylation sites. In: International Conference on Applied Informatics for Health and Life Sciences (AIHLS 2014), Kuşadası, Turkey

Yeniterzi, Süveyda and Sezerman, Uğur (2009) Enzyminer: automatic identification of protein level mutations and their impact on target enzymes from PubMed abstracts. BMC Bioinformatics, 10 (Supple). ISSN 1471-2105

Yetişgin, Abuzer Alp and Çetinel, Sibel and Zuvin, Merve and Koşar, Ali and Kutlu, Özlem (2020) Therapeutic nanoparticles and their targeted delivery applications. Molecules, 25 (9). ISSN 1420-3049

Yılancıoğlu, Kaan and Çokol, Murat and Pastırmacı, İnanç and Erman, Batu and Çetiner, Selim (2014) Oxidative stress is a mediator for increased lipid accumulation in a newly isolated Dunaliella salina strain. PLoS One, 9 (3). ISSN 1932-6203 (Print) 1932-6203 (Online)

Yılancıoğlu, Kaan and Weinstein, Zohar Bat-El and Meydan, Cem and Akhmetov, Azat and Toprak, Işıl and Durmaz, Arda and Iossifov, Ivan and Kazan, Hilal and Roth, Frederick P. and Çokol, Murat (2014) Target-independent prediction of drug synergies using only drug lipophilicity. Journal of Chemical Information and Modeling, 54 (8). pp. 2286-2293. ISSN 1549-9596 (Print) 1549-960X (Online)

Yıldız, Mehmet and Özdemir, Nazlı Gülsine and Bektaş, Gökhan and Keulen, Casey J. and Boz, Talha and Şengün, Ege Fikri and Öztürk, Cem and Menceloğlu, Yusuf Z. and Suleman, Afzal (2012) An experimental study on the process monitoring of resin transfer molded composite structures using fiber optic sensors. Journal of Manufacturing Science and Engineering - Transactions of ASME, 134 (4). ISSN 1087-1357

Yıldızhan, Yağmur and Göğebakan, Umut Barış and Altay, Alara and Islam, Monsur and Martinez-Duarte, Rodrigo and Elitaş, Meltem (2018) Quantitative investigation for the dielectrophoretic effect of fluorescent dyes at single-cell resolution. ACS Omega, 3 (7). pp. 7243-7246. ISSN 2470-1343

Yılgör, Emel and Eynur, Tuğba and Koşak, Çağla and Bilgin, Sevilay and Yılgör, İskender and Malay, Özge and Menceloğlu, Yusuf Z. and Wilkes, Garth L. (2011) Fumed silica filled poly(dimethylsiloxane-urea) segmented copolymers: preparation and properties. Polymer, 52 (19). pp. 4189-4198. ISSN 0032-3861

Yılmaz, Cemal (2013) Test case-aware combinatorial interaction testing. IEEE Transactions on Software Engineering, 39 (5). pp. 684-706. ISSN 0098-5589

Yılmaz, Cemal (2011) Test-aware combinatorial interaction testing. [Working Paper / Technical Report] Sabanci University ID:SU_FENS_2011/0005

Yılmaz, Cemal (2021) The software aspect of preserving digital arts. In: Artut, Selçuk and Karaman, Osman Serhat and Yılmaz, Cemal, (eds.) Technological arts preservation. Sabancı University Sakıp Sabancı Museum (SSM), Istanbul, Turkey, pp. 102-115. ISBN 978-625-7329-16-3

Yılmaz, Cemal (2010) Using hardware performance counters for fault localization. In: International Conference on Advances in System Testing and Validation Lifecycle, (Accepted)

Yılmaz, Cemal and Dumlu, Emine and Cohen, Myra B. and Porter, Adam (2014) Reducing masking effects in combinatorial interaction testing: a feedback driven adaptive approach. IEEE Transactions on Software Engineering, 40 (1). pp. 43-66. ISSN 0098-5589 (Print) 1939-3520 (Online)

Yılmaz, Cemal and Fouche, Sandro and Cohen, Myra B. and Porter, Adam and Demiröz, Gülşen and Koç, Uğur (2014) Moving forward with combinatorial interaction testing. Computer, 47 (2). pp. 37-45. ISSN 0018-9162 (Print) 1558-0814 (Online)

Yılmaz, Cemal and Porter, Adam (2010) Combining hardware and software instrumentation to classify program executions. In: International Symposium on the Foundations of Software Engineering (FSE), (Accepted)

Yılmaz, Cemal and Porter, Adam and Dumlu, Emine (2010) Program yürütmelerini sınıflandırmak için donanım ve yazılım ölçüm aygıtlarını birleştirme (Combining hardware and software instrumentation to classify program executions). In: Yazılım Kalitesi ve Yazılım Geliştirme Araçları Sempozyumu, (Accepted)

Yılmaz, Melike Sevim and Yarar, Begüm and Metin, Önder and Alkan Gürsel, Selmiye (2018) A facile synthesis and assembly of ultrasmall Pt nanoparticles on reduced graphene oxide‑carbon black hybrid for enhanced performance in PEMFC. Materials & Design, 151 . pp. 29-36. ISSN 0261-3069 (Print) 0264-1275 (Online)

Yılmaz, Melike Sevim and Yarar Kaplan, Begüm and Alkan Gürsel, Selmiye and Metin, Önder (2019) Binary CuPt alloy nanoparticles assembled on reduced graphene oxide-carbon black hybrid as efficient and cost-effective electrocatalyst for PEMFC. International Journal of Hydrogen Energy, 44 (27). pp. 14184-14192. ISSN 0360-3199 (Print) 1879-3487 (Online)

Yördem, Sinan Onur and Gülleroğlu, Mert and Öğüt, Erdem and Menceloğlu, Yusuf Z. and Papila, Melih (2006) Piezoelectric Polymer and Ceramic Ultrafine Fibers for Piezocomposite Films. In: 21st Technical Conference- American Soceity for Composites, Dearborn MI USA (Accepted)

Yörükoğlu, Deniz and Bakış, Yasin and Sezerman, Uğur (2009) An entropy based heuristic model for predicting functional sub-type divisions of protein families. In: 11th Genetic and Evolutionary Computation Conference, GECCO 2009, Montreal, Québec, Canada

Yüce, Meral and Budak, Hikmet (2014) Dispersion quality of amine functionalized multiwall carbon nanotubes plays critical roles in polymerase chain reaction enhancement. Journal of Nanoparticle Research, 16 (12). ISSN 1388-0764 (Print) 1572-896X (Online)

Yüce, Meral and Kurt, Hasan and Budak, Hikmet (2014) Characterization of a dual biotin tag for improved single stranded dna production. Analytical Methods, 6 (2). pp. 548-557. ISSN 1759-9660 (Print) 1759-9679 (Online)

Yüce, Meral and Kurt, Hasan and Hussain, Babar and Budak, Hikmet (2018) Systematic evolution of ligands by exponential enrichment for aptamer selection. In: Sarmento, Bruno and Neves, José Das, (eds.) Biomedical Applications of Functionalized Nanomaterials: Concepts, Development and Clinical Translation. Elsevier, Amsterdam, pp. 211-243. ISBN 9780323508780 (Print) 9780323508797 (Online)

Yüce, Meral and Kurt, Hasan and Mokkapati, Raghu Sarma and Budak, Hikmet (2014) Employment of nanomaterials in polymerase chain reaction: insight into the impacts and putative operating mechanisms of nano-additives in PCR. RSC Advances, 4 (69). pp. 36800-36814. ISSN 2046-2069 (Print) 2046-2069 (Online)

Yüce, Meral and Ullah, Naimat and Budak, Hikmet (2015) Trends in aptamer selection methods and applications. Analyst, 140 (16). pp. 5379-5399. ISSN 0003-2654 (Print) 1364-5528 (Online)

Yüce, Meral and Uysal, Ebru and Budak, Hikmet (2015) Amplification yield enhancement of short DNA templates using bulk and surface-attached amine-functionalized single-wall carbon nanotubes. Applied Surface Science, 349 . pp. 147-155. ISSN 0169-4332 (Print) 1873-5584 (Online)

Yürüm, Alp and Alkan Gürsel, Selmiye and Saner Okan, Burcu and Taralp, Alpay and Bakan, Feray and Letofsky-Papst, Ilse and Yürüm, Yuda (2015) Size and dispersion control of Pt nanoparticles grown upon graphite-derived nanosheets. Chemical Engineering Communications, 202 (12). pp. 1645-1656. ISSN 0098-6445 (Print) 1563-5201 (Online)

Yürüm, Yuda and Saner Okan, Burcu and Okyay, Firuze and Yürüm, Alp and Dinç, Fatma and Görgülü, Neylan and Alkan Gürsel, Selmiye (2013) An improved technique for the exfoliation of graphene nanosheets and utilization of their nanocomposites as fuel cell electrodes. In: 2nd International Conference on Materials and Applications for Sensors and Transducers (IC-MAST), Budapest, Hungary

Z

Zuvin, Merve and Koçak, Muhammed and Ünal, Özlem and Akkoç, Yunus and Kutlu, Özlem and Yağcı Acar, Havva and Gözüaçık, Devrim and Koşar, Ali (2019) Nanoparticle based induction heating at low magnitudes of magnetic field strengths for breast cancer therapy. Journal of Magnetism and Magnetic Materials, 483 . pp. 169-177. ISSN 0304-8853 (Print) 1873-4766 (Online)

Zuvin, Merve and Kuruoğlu, Efe and Kaya, Veysel Oğulcan and Ünal, Özlem and Kutlu, Özlem and Yağcı Acar, Havva and Gözüaçık, Devrim and Koşar, Ali (2019) Magnetofection of green fluorescent protein encoding DNA-bearing polyethyleneimine-coated superparamagnetic iron oxide nanoparticles to human breast cancer cells. ACS Omega, 4 (7). pp. 12366-12374. ISSN 2470-1343

Ç

Çakal Saraç, Elçin and Haghighi Poudeh, Leila and Seyyed Monfared Zanjani, Jamal and Cebeci, Fevzi Çakmak and Aydın, İsmail and Menceloğlu, Yusuf Z. and Saner Okan, Burcu (2020) New hybrid nano additives for thermoplastic compounding: CVD grown carbon fiber on graphene. In: 35th International Conference of the Polymer Processing Society (PPS), Izmir, Turkey

Çalpur, Mehmet Çağrı and Arca, Sevgi and Çalpur, Tansu Çağla and Yılmaz, Cemal (2017) Makine öğrenmesi ile mobil uygulama sınıflandırılması ve otomatik keşif testi (Mobile application classification using machine learning and automated exploratory testing). In: 11th Turkish National Software Engineering Symposium (UYMS 2017), Alanya, Turkey

Çalpur, Mehmet Çağrı and Arca, Sevgi and Çalpur, Tansu Çağla and Yılmaz, Cemal (2017) Model dressing for automated exploratory testing. In: IEEE International Conference on Software Quality, Reliability and Security Companion (QRS-C 2017), Prague, Czech Republic

Çalpur, Mehmet Çağrı and Yılmaz, Cemal (2016) Towards having a cloud of mobile devices specialized for software testing. In: IEEE/ACM International Conference on Mobile Software Engineering and Systems (MobileSoft 2016), Austin, TX, United States

Çetiner, Selim (2009) AB normlarına uyumlu bir ulusal biyogüvenlik kanununa ihtiyacımız var. NTV Bilim, 5 . pp. 8-10. ISSN 1308-8637

Çetinoğlu, Özlem and Oflazer, Kemal (2006) Altsözcüksel birimlerle Türkçe için sözcüksel işlevsel gramer geliştirilmesi. In: Turkish Symposium on Artificial Intelligence and Neural Networks, Akyaka, Muğla, Türkiye

Çıkım, Taha Abdullah and Gözüaçık, Devrim and Koşar, Ali (2014) Power reclamation efficiency of a miniature energy-harvesting device using external fluid flows. lnternational Journal of Energy Research, 38 (10). pp. 1318-1330. ISSN 0363-907X (Print) 1099-114X (Online)

Çıkım, Taha Abdullah and Kaya, Alihan and Gözüaçık, Devrim and Koşar, Ali (2012) Power reclamation efficiency of a miniature energy harvesting device using internal fluid flows. In: Global Conference on Global Warming 2012, Istanbul, Turkey

Çilingir, Halime Didem and Papila, Melih (2010) "Equivalent" electromechanical coefficient for IPMC actuator design based on equivalent bimorph beam theory. Experimental Mechanics, 50 (8). pp. 1157-1168. ISSN 0014-4851

Çimren, Emrah and Çatay, Bülent and Budak, Erhan (2007) Development of a machine tool selection system using AHP. The International Journal of Advanced Manufacturing Technology, 35 (3-4). pp. 363-376. ISSN 0268-3768

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Çokol, Murat and Weinstein, Zohar Bat-El and Yılancıoğlu, Kaan and Tasan, Murat and Doak, Allison and Cansever, Dilay and Mutlu, Beste and Li, Siyang and Rodriguez-Esteban, Raul and Akhmedov, Murodzhon and Güvenek, Ayşegül and Çokol Çakmak, Melike and Çetiner, Selim and Giaever, Guri and Iossifov, Ivan and Nislow, Corey and Shoichet, Brian and Roth, Frederick P. (2014) Large-scale identification and analysis of suppressive drug interactions. Chemistry and Biology, 21 (4). pp. 541-551. ISSN 1074-5521 (Print) 1879-1301 (Online)

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Çolak, Ersoy and Karmous, Ines and Avşar, Bihter and Sayers, Zehra (2016) Heterotrimeric g-protein alpha (alpha) subunit from a. thaliana forms trimeric structures in solution. In: 60th Annual Meeting of the Biophysical-Society, Los Angeles, CA

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Öktem-Okullu, Sinem and Tiftikçi, Arzu and Saruç, Murat and Çiçek, Bahattin and Vardareli, Eser and Tözün, Nurdan and Kocagöz, Tanıl and Sezerman, Uğur and Yavuz, Ahmet Sinan and Sayı-Yazgan, Ayça (2015) Multiplex-PCR-based screening and computational modeling of virulence factors and t-cell mediated immunity in helicobacter pylori infections for accurate clinical diagnosis. PLoS One, 10 (8). ISSN 1932-6203

Önal, Gizem and Kutlu, Özlem and Özer, Ebru and Gözüaçık, Devrim and Karaduman, Ayşen and Dökmeci Emre, Serap (2019) Impairment of lipophagy by PNPLA1 mutations causes lipid droplet accumulation in primary fibroblasts of autosomal recessive congenital ichthyosis patients. Journal of Dermatological Science, 93 (1). pp. 50-57. ISSN 0923-1811 (Print) 1873-569X (Online)

Öz, Tuğçe and Güvenek, Ayşegül and Yıldız, Sadık and Karaboğa, Enes and Tamer, Yusuf Talha and Mumcuyan, Nirva and Ozan, Vedat Burak and Şentürk, Gizem Hazal and Çokol, Murat and Yeh, Pamela and Toprak, Erdal (2014) Strength of selection pressure is an important parameter contributing to the complexity of antibiotic resistance evolution. Molecular Biology and Evolution, 31 (9). pp. 2387-2401. ISSN 0737-4038 (Print) 1537-1719 (Online)

Öz Arslan, Devrim and Korkmaz, Gözde and Gözüaçık, Devrim (2011) Autophagy: a cellular stres and a cell death mechanism (Otofaji: bir hücresel stres yanıtı ve ölüm mekanizması). Acıbadem Üniversitesi Sağlık Bilimleri Dergisi, 2 (4). pp. 184-194. ISSN 1309-470X

Özbaykal, Gizem and Atılgan, Ali Rana and Atılgan, Canan (2015) In silico mutational studies of Hsp70 disclose sites with distinct functional attributes. Proteins: Structure, Function and Bioinformatics, 83 (11). pp. 2077-2090. ISSN 0887-3585 (Print) 1097-0134 (Online)

Özbey, Arzu and Karimzadehkhouei, Mehrdad and Kocatürk, Nur Mehpare and Erbil Bilir, Seçil and Kutlu, Özlem and Gözüaçık, Devrim and Koşar, Ali (2019) Inertial focusing of cancer cell lines in curvilinear microchannels. Micro and Nano Engineering, 2 . pp. 53-63. ISSN 2590-0072

Özbey, Arzu and Karimzadehkhouei, Mehrdad and Sefiane, Khellil and Koşar, Ali and Christy, John R. E. (2019) On bubble dynamics in subcooled nucleate boiling on a platinum wire. International Journal of Thermal Sciences, 137 . pp. 1-12. ISSN 1290-0729 (Print) 1778-4166 (Online)

Özbulut, Murat and Tofighi, Nima and Yıldız, Mehmet and Gören, Ömer (2015) Sph modelling of long-term sway-sloshing motion in a rectangular tank. In: The Twenty-fifth International Offshore and Polar Engineering Conference, Kona, Hawaii, USA

Özcan, Bahri Devrim and Baylan, Makbule and Özcan, Numan and Tekdal, Dilek (2010) Characterization of thermostable α-amylase from thermophilic andAlkaliphilic bacillus sp. isolate DM-15. Research Journal of Biological Sciences, 5 (1). pp. 118-124. ISSN 1815-8846 (Print) 1993-6087 (Online)

Özçelik, Burcu and Kalkan, Kübra and Yılmaz, Cemal (2010) An approach for classifying program failures. In: International Conference on Advances in System Testing and Validation Lifecycle, (Accepted)

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Özçelik, Burcu and Yılmaz, Cemal (2017) Seer: a lightweight online failure prediction approach. In: 2017 IEEE Computer Software and Applications Conference, Torino, Italy (Accepted)

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Özden Yenigün, Elif and Atılgan, Canan and Elliott, James (2015) Tuning interface via multi-scale modeling for superior carbon nanotube-polymer nanocomposites/ Yarns. In: 20th International Conference on Composite Materials (ICCM20), Copenhagen, Denmark

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