Items where Division is "Biological Sciences & Bio Eng." and Year is 2018

Article

Akkoç, Yunus and Gözüaçık, Devrim (2018) Autophagy and liver cancer. Turkish Journal of Gastroenterology, 29 (3). pp. 270-282. ISSN 1300-4948 (Print) 2148-5607 (Online)

Altun, Esra and Aydoğdu, Mehmet Onur and Koç, Fatma and Kutlu, Özlem and Gözüaçık, Devrim and Yücel, Sevil and Gündüz, Oğuzhan (2018) Amoxicillin loaded hollow microparticles in the treatment of osteomyelitis disease using single-nozzle electrospinning. BioNanoScience, 8 (3). pp. 790-801. ISSN 2191-1630 (Print) 2191-1649 (Online)

Asif, Muhammad and Tunç, Cevza Esin and Öztürk, Levent (2018) Changes in yield attributes and K allocation in wheat as affected by K deficiency and elevated CO2. Plant and Soil, 426 (1-2). pp. 153-162. ISSN 0032-079X (Print) 1573-5036 (Online)

Avşar, Bihter and Esmaeilialiabadi, Danial (2018) Identification of in silico mirnas in four plant species from fabaceae family. Agrofor: International Journal, 3 (3). pp. 122-130. ISSN 2490-3434 (Print) 2490-3442 (Online)

Bilen, Bukem and Ateş Alkan, Fatma and Barutcu, Ümit Bora and Sezen, Meltem and Ünlü, Mehmet Burçin and Aghahev, Kamran (2018) Examination of metal mobilization from a gunshot by scanning acoustic microscopy, scanning electron microscopy, energy-dispersive X-Ray spectroscopy, and inductively coupled plasma optical emission spectroscopy: a case report. Journal of Medical Case Reports, 12 (1). ISSN 1752-1947

Boyd, Laura Susan and Gözüaçık, Devrim and Joubert, Anna Margaretha (2018) The in vitro effects of a novel estradiol analog on cell proliferation and morphology in human epithelial cervical carcinoma. Cellular & Molecular Biology Letters, 23 . ISSN 1425-8153 (Print) 1689-1392 (Online)

Candan, Nilgün and Çakmak, İsmail and Öztürk, Levent (2018) Zinc-biofortified seeds improved seedling growth under zinc deficiency and drought stress in durum wheat. Journal of Plant Nutrition and Soil Science, 181 (3). pp. 388-395. ISSN 1436-8730 (Print) 1522-2624 (Online)

Çakmak, İsmail and Kutman, U. B. (2018) Agronomic biofortification of cereals with zinc: a review. European Journal of Soil Science, 69 (1). pp. 172-180. ISSN 1351-0754 (Print) 1365-2389 (Online)

Çokol-Çakmak, Melike and Bakan, Feray and Çetiner, Selim and Çokol, Murat (2018) Diagonal method to measure synergy among any number of drugs. Journal of Visualized Experiments (JoVE), 2018 (136). ISSN 1940-087X

Deretic, Vojo and Prossnitz, Eric and Burge, Mark and Campen, Matthew J. and Cannon, Judy and Liu, Ke Jian and Sklar, Larry A. and Allers, Lee and Garcia, Sally Ann and Baehrecke, Eric H. and Behrends, Christian and Cecconi, Francesco and Codogno, Patrice and Chen, Guang-Chao and Elazar, Zvulun and Eskelinen, Eeva-Liisa and Fourie, Bernard and Gözüaçık, Devrim and Hong, Wanjin and Hotamisliği, Gökhan and Jaattela, Marja and Jo, Eun-Kyeong and Johansen, Terje and Juhasz, Gabor and Kimchi, Adi and Ktistakis, Nicholas and Kroemer, Guido and Mlzushima, Noboru and Münz, Christian and Reggiori, Fulvio and Rubinsztein, David and Ryan, Kevin and Schroder, Kate and Simonsen, Anne and Tooze, Sharon and Vaccaro, Maria I. and Yoshimori, Tamotsu and Yu, Li and Zhang, Hong and Klionsky, Daniel J. (2018) Autophagy, Inflammation, and Metabolism (AIM) Center of Biomedical Research Excellence: supporting the next generation of autophagy researchers and fostering international collaborations. Autophagy . ISSN 1554-8627 (Print) 1554-8635 (Online) Published Online First http://dx.doi.org/10.1080/15548627.2018.1465784

Elitaş, Meltem (2018) On-chip isoniazid exposure of mycobacterium smegmatis penicillin-binding protein (PBP) mutant using time-lapse fluorescent microscopy. Micromachines, 9 (11). ISSN 2072-666X

Erduran, Erol and Deǧer, Orhan and Birinci, Yelda and Ayar, Ahmet and Bahadır, Ayşenur (2018) Augmented mitochondrial cytochrome c oxidase activity in children with iron deficiency: a tandem between iron and copper? Archives of Medical Science, 14 (1). pp. 151-156. ISSN 1734-1922 (Print) 1896-9151 (Online)

Ghorbani, Morteza and Alcan, Gökhan and Khalili Sadaghiani, Abdolali and Mohammadi, Ali and Ünel, Mustafa and Gözüaçık, Devrim and Koşar, Ali (2018) Characterization and pressure drop correlation for sprays under the effect of micro scale cavitation. Experimental Thermal and Fluid Science, 91 . pp. 89-102. ISSN 0894-1777 (Print) 1879-2286 (Online)

Ghorbani, Morteza and Sözer, Canberk and Alcan, Gökhan and Ünel, Mustafa and Ekici, Sinan and Üvet, Hüseyin and Koşar, Ali (2018) Biomedical device prototype based on small scale hydrodynamic cavitation. AIP Advances, 8 (3). ISSN 2158-3226

Grujcic, Djordje and Drinic, Milanka and Zivanovic, Iva and Çakmak, İsmail and Singh, Bal Ram (2018) Micronutrient availability in soils of Northwest Bosnia and Herzegovina in relation to silage maize production. Acta Agriculturae Scandinavica, Section B - Soil and Plant Science, 68 (4). pp. 301-310. ISSN 0906-4710 (Print) 1651-1913 (Online)

Hacısalihoğlu, Gökhan and Burton, Amy L. and Gustin, Jeffery L. and Eker, Selim and Asıklı, Safiye and Heybet, Elif Haklı and Öztürk, Levent and Çakmak, İsmail and Yazıcı, Mustafa Atilla and Burkey, Kent O. and Orf, James and Settles, Mark A. (2018) Quantitative trait loci associated with soybean seed weight and composition under different phosphorus levels. Journal of Integrative Plant Biology, 60 (3). pp. 232-241. ISSN 1672-9072 (Print) 1744-7909 (Online)

Hussain, Babar and Lucas, Stuart J. and Budak, Hikmet (2018) CRISPR/Cas9 in plants: at play in the genome and at work for crop improvement. Briefings in Functional Genomics, 17 (5). pp. 319-328. ISSN 2041-2649 (Print) 2041-2657 (Online)

Karakaş, Bahriye and Özmay, Yeliz and Başağa, Hüveyda and Gül, Özgür and Kütük, Özgür (2018) Distinct apoptotic blocks mediate resistance to panHER inhibitors in HER2+breast cancer cells. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 1865 (8). pp. 1073-1087. ISSN 0167-4889 (Print) 0006-3002 (Online)

Khalid, Maria and Khalid, Zoya and Gul, Alvina and Amir, Rabia and Ahmad, Zubair (2018) Characterization of wheat cell wall invertase genes associated with drought tolerance in synthetic-derived wheat. International Journal of Agriculture and Biology, 20 (12). pp. 2677-2684. ISSN 1560-8530 (Print) 1814-9596 (Online)

Khalid, Zoya and Sezerman, Osman Ugur (2018) Prediction of HIV drug resistance by combining sequence and structural properties. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 15 (3). pp. 966-973. ISSN 1545-5963 (Print) 1557-9964 (Online)

Kılıç Kurt, Zuhal and Bakar Ateş, Filiz and Karakaş, Bahriye and Kütük, Özgür (2018) Cytotoxic and apoptotic effects of novel pyrrolo[2,3-d]pyrimidine derivatives containing urea moieties on cancer cell lines. Anti-Cancer Agents in Medicinal Chemistry, 18 (9). pp. 1303-1312. ISSN 1871-5206 (Print) 1875-5992 (Online)

Knijnenburg, Jesper T. N. and Hilty, Florentine M. and Oelofse, Janro and Buitendag, Riaan and Zimmermann, Michael B. and Çakmak, İsmail and Grobler, Anne F. (2018) Nano- and Pheroid technologies for development of foliar iron fertilizers and iron biofortification of soybean grown in South Africa. Chemical and Biological Technologies in Agriculture, 5 (1). ISSN 2196-5641

Kocatürk, Nur Mehpare and Gözüaçık, Devrim (2018) Crosstalk between mammalian autophagy and the ubiquitin-proteasome system. Frontiers in Cell and Developmental Biology, 6 . ISSN 2296-634X

Kutlu, Özlem and Kaleli, Hümeyra Nur and Özer, Ebru (2018) Molecular pathogenesis of nonalcoholic steatohepatitis- (NASH-) related hepatocellular carcinoma. Canadian Journal of Gastroenterology and Hepatology, 2018 . ISSN 2291-2789 (Print) 2291-2797 (Online)

Manda, Gina and Hinescu, Mihail E. and Neagoe, Ionela V. and Ferreira, Luis F. V. and Boscencu, Rica and Vasos, Paul and Başağa, Hüveyda and Cuadrado, Antonio (2018) Emerging therapeutic targets in oncologic photodynamic therapy. Current Pharmaceutical Design, 24 (44). pp. 5268-5295. ISSN 1381-6128 (Print) 1873-4286 (Online)

Olgun, Gülden and Şahin, Özgür and Taştan, Öznur (2018) Discovering lncRNA mediated sponge interactions in breast cancer molecular subtypes. BMC Genomics, 19 (1). ISSN 1471-2164 (Print) 1471-2164 (Online)

Özbey, Arzu and Karimzadehkhouei, Mehrdad and Bayrak, Özgecan and Koşar, Ali (2018) Inertial focusing of microparticles in curvilinear microchannels with different curvature angles. Microfluidics and Nanofluidics, 22 (6). ISSN 1613-4982 (Print) 1613-4990 (Online)

Rehman, Abdul and Farooq, Muhammad and Naveed, Muhammad and Öztürk, Levent and Nawaz, Ahmad (2018) Pseudomonas-aided zinc application improves the productivity and biofortification of bread wheat. Crop and Pasture Science, 69 (7). pp. 659-672. ISSN 1836-0947 (Print) 1836-5795 (Online)

Rehman, Abdul and Farooq, Muhammad and Öztürk, Levent and Asif, Muhammad and Siddique, Kadambot H. M. (2018) Zinc nutrition in wheat-based cropping systems. Plant and Soil (SI), 422 (1-2). pp. 283-315. ISSN 0032-079X (Print) 1573-5036 (Online)

Rempelos, Leonidas and Almuayrifi, Abujawad M. and Baranski, Marcin and Tetard-Jones, Catherine and Eyre, Mick and Shotton, Peter and Çakmak, İsmail and Öztürk, Levent and Cooper, Julia and Volakakis, Nikolaos and Schmidt, Christoph and Sufar, Enas and Wang, Juan and Wilkinson, Andrew and Rosa, Eduardo A. S. and Zhao, Bingqiang and Rose, Terry J. and Leifert, Carlo and Bilsborrow, Paul (2018) Effects of agronomic management and climate on leaf phenolic profiles, disease severity, and grain yield in organic and conventional wheat production systems. Journal of Agricultural and Food Chemistry, 66 (40). pp. 10369-10379. ISSN 0021-8561 (Print) 1520-5118 (Online)

Saving, T. V. and Abugaliyeva, A. I. and Çakmak, İsmail and Kozhakhmetov, K. (2018) Mineral composition of wild relatives and introgressive forms in wheat selection. Vavilovskii Zhurnal Genetiki i Selektsii, 22 (1). pp. 88-96. ISSN 2500-0462 (Print) 2500-3259 (Online)

Schick, Sassicaia and Broadrup, Robert L. and Mayack, Christopher and White, Helen K. and Macherone, Anthony (2018) Integrating GC/TOF exposome profiling and genetic disease screening to provide a holistic perspective on honey bee health. American Laboratory, 50 (3). pp. 21-23. ISSN 0044-7749

Suwannapong, Guntima and Samrit, Maksong and Phainchajoen, Mananya and Benbow, Mark and Mayack, Christopher (2018) Survival and health improvement of Nosema infected Apis florea (Hymenoptera: Apidae) bees after treatment with propolis extract. Journal of Asia-Pacific Entomology, 21 (2). pp. 437-444. ISSN 1226-8615

Tavakol, Ershad and Jakli, Balint and Çakmak, İsmail and Dittert, Klaus and Karlovsky, Petr and Pfohl, Katharina and Senbayram, Mehmet (2018) Optimized potassium nutrition improves plant-water-relations of barley under PEG-induced osmotic stress. Plant and Soil, 430 (1-2). pp. 23-35. ISSN 0032-079X (Print) 1573-5036 (Online)

Tekdal, Dilek and Çetiner, Selim (2018) Investigation of the effects of salt (NaCl) stress and cadmium (cd) toxicity on growth and mineral acquisition of Vuralia turcica. South African Journal of Botany, 118 . pp. 274-279. ISSN 0254-6299 (Print) 1727-9321 (Online)

Tekdal, Dilek and Çıngay, Burçin and Çetiner, Selim (2018) Determination of soil nutrient status in Vuralia turcica populations growing at different locations in the Central Anatolia Region of Turkey. Turkish Journal of Botany, 42 (3). pp. 317-326. ISSN 1300-008X (Print) 1303-6106 (Online)

Vuruşaner Aktaş, Beyza and Gargiulo, Simona and Testa, Gabriella and Gamba, Paola and Leonarduzzi, Gabriella and Poli, Giuseppe and Başağa, Hüveyda (2018) The role of autophagy in survival response induced by 27-hydroxycholesterol in human promonocytic cells. Redox Biology, 17 . pp. 400-410. ISSN 2213-2317

Weinstein, Zohar B. and Kuru, Nurdan and Kiriakov, Szilvia and Palmer, Adam C. and Khalil, Ahmad S. and Clemons, Paul A. and Zaman, Muhammad H. and Roth, Frederick P. and Çokol, Murat (2018) Modeling the impact of drug interactions on therapeutic selectivity. Nature Communications, 9 . ISSN 2041-1723

Yar, Yasemin and Khodadust, Rouhollah and Akkoç, Yunus and Utkur, Mustafa and Sarıtaş, Emine Ülkü and Gözüaçık, Devrim and Acar, Havva Yağcı (2018) Development of tailored SPION-PNIPAM nanoparticles by ATRP for dually responsive doxorubicin delivery and MR imaging. Journal of Materials Chemistry B, 6 (2). pp. 289-300. ISSN 2050-750X (Print) 2050-7518 (Online)

Yenenler, Aslı and Venturini, Alessandro and Burduroglu, Huseyin Cahit and Sezerman, Osman Uğur (2018) Investigating the structural properties of the active conformation BTL2 of a lipase from Geobacillus thermocatenulatus in toluene using molecular dynamic simulations and engineering BTL2 via in-silico mutation. Journal of Molecular Modeling, 24 (9). ISSN 1610-2940 (Print) 0948-5023 (Online)

Papers in Conference Proceedings

Alijani Alijanvand, Hossein and Özbey, Arzu and Karimzadehkhouei, Mehrdad and Koşar, Ali (2018) The effect of curvature angle on mixing efficiency in curvilinear microchannels. In: 6th Micro and Nano Flows Conference 2018, Atlanta, USA

Asif, Muhammad and Öztürk, Levent (2018) Interactive effect of elevated carbon dioxide, magnesium deficiency and drought stress on wheat. In: International Conference on Climate Smart Agriculture: The Way of Farming for 21st Century, Multan, Pakistan

Asif, Muhammad and Tunç, Cevza Esin and Öztürk, Levent (2018) Effect of predicted climate on growth and yield of wheat grown under varied zinc and water supply. In: 17th International Congress of Soil Science, Faisalabad, Pakistan

Avşar, Bihter and Esmaeilialiabadi, Danial (2018) Evolutionary insights into micrornas of kiwifruit actinidia Chinensis and its close relatives. In: IX International Scientific Agriculture Symposium (Agrosym 2018), Jahorina, Bosnia and Herzegovina

Borofsky, Talia and Zhou, Rebecca and Barranca, Victor and Mayack, Christopher (2018) Hive minded: like neurons, honeybees collectively integrate inhibitory stop signals to efficiently regulate forager recruitment. In: International Union for the Study of Social Insects (IUSSI 2018), Guarujá, Brazil

Kaneko Göğüş, Yuki and Bakkal, Emine Süphan and Sayers, Zehra (2018) Active learning in university: an approach to a freshman science course. In: 46th SEFI Annual Conference 2018, Copenhagen, Denmark

Karamahmutoğlu, Hande and Çetin, Metin and Yağcı, Tamer and Elitaş, Meltem (2018) Behavior of HepG2 liver cancer cells using microfluidic-microscopy: a preliminary study. In: Microfluidics, BioMEMS, and Medical Microsystems XVI, San Francisco, USA

Liu, Gökşin and Atılgan, Canan and Sayers, Zehra (2018) Structural characterization of haemophilus influenzae ferric bindind protein in different environmental conditions. In: XVII International Small Angle Scattering Conference - SAS2018, Traverse City, Michigan

Rehman, Raheela and Çakmak, İsmail and Öztürk, Levent (2018) Differences in absorption and distribution of foliarly-applied zinc in maize and wheat by using stable isotope of 70Zn and Zn-responsive fluorescent dye Zinpyr. In: Borlaug Global Rust Initiative Technical Workshop 2018, Marrakech, Morocco

Rehman, Raheela and Çakmak, İsmail and Öztürk, Levent (2018) Uptake, transport and seed deposition of zinc (Zn) in wheat and maize. In: 2018 IFS Agronomic Conference, Robinson College, Cambridge, UK

Rehman, Raheela and Öztürk, Levent and Çakmak, İsmail (2018) Studying the differences in absorption and distribution of foliar-applied zinc in maize and wheat grown with low or adequate Zn supply. In: International Congress on Agriculture and Animal Sciences (ICAGAS), Alanya, Turkey

Sayers, Zehra (2018) International Cooperation for Enhancing Nuclear Safety, Security, Safeguards and Non-proliferation-60 Years of IAEA and EURATOM Introduction. In: 20th Edoardo Amaldi Conference on International Cooperation for Enhancing Nuclear Safety, Security, Safeguards and Non-Proliferation, Accad Nazl Lincei, Rome, ITALY

Book Section / Chapter

Bayraktar, Öznur and Gözüaçık, Devrim (2018) The crosstalk between miRNAs and autophagy in cancer progression. In: Fayyaz, Sundas and Farooqi, Ammad Ahmad, (eds.) Recent Trends in Cancer Biology: Spotlight on Signaling Cascades and microRNAs. Springer International Publishing, USA, pp. 279-291. ISBN 978-3-319-71552-0 (Print) 978-3-319-71553-7 (Online)

Gözüaçık, Devrim and Karakaş Schüller, Hacer Ezgi and Akkoç, Yunus and Özata, Başak (2018) Otofaji ve kanser (Autophagy and cancer). In: Baran, Yusuf, (ed.) Kanser Moleküler Biyolojisi. Kısayol Yayıncılık, Ankara, pp. 239-254. ISBN 9786052329306

Sogutmaz Ozdemir, Bahar and Budak, Hikmet (2018) Application of tissue culture and transformation techniques in model species Brachypodium distachyon. In: Sablok, Gaurav and Budak, Hikmet and Ralph, Peter J., (eds.) Brachypodium Genomics: Methods and Protocols. Methods in Molecular Biology, 1667. Humana, New York, NY, pp. 289-310. ISBN 978-1-4939-8439-8 (Print) 978-1-4939-7278-4 (Online)

Wakeel, Abdul and Farooq, Muhammad and Bashir, Khurram and Öztürk, Levent (2018) Micronutrient malnutrition and biofortification: recent advances and future perspectives. In: Hossain, Mohammad Anwar and Kamiya, Takehiro and Burritt, David J. and Tran, Lam-Son Phan and Fujiwara, Toru, (eds.) Plant Micronutrient Use Efficiency: Molecular and Genomic Perspectives in Crop Plants. Elsevier, UK, USA, pp. 225-243. ISBN 9780128122433 (Print) 9780128121047 (Online)

Thesis

Aktay, Öznur (2018) Identifying regulation of CANT1 during endoplasmic reticulum stress-induced cell death. [Thesis]

Çiftçi, Özgün Cem (2018) Investigation of gene transfer potential with classical hybridization in vuralia turcica and identification of rhizobacterial species contributing its development. [Thesis]

Durası, İlknur Melis (2018) Identification of miRNA regulatory pathways in complex diseases. [Thesis]

Hussain, Babar (2018) Genetic and genomic architecture of salt tolerance in bread wheat. [Thesis]

Karataş, Sevde Nur (2018) Designing selective small molecule inhibitor screening through BH3 profiling. [Thesis]

Khan, Zaeema (2018) Brachypodium distachyon seedling growth visualization under osmotic stress and overexpression of MIR7757 to increase drought tolerance. [Thesis]

Kocatuğ, Nazlı (2018) Computational assessment of the effect of allosteric mutations on the dynamics of PDZ domains. [Thesis]

Kocatürk, Nur Mehpare (2018) Cross-link between the ubiquitin-proteasome system (UPS) and autophagy in the regulation of mitophagy. [Thesis]

Koçak, Muhammed (2018) Development of protein-conjugated spion-based theranostic nanoparticles as small rna gene therapy vehicles in cancer treatment. [Thesis]

Musul, Biran (2018) The role of tumor stroma and cancer associated fibroblasts in tumor growth through cytokines. [Thesis]

Taşkıran, Hakan (2018) Screening of p53-MDM2 interaction inhibitors through genome editing, high-content screening, and surface plasmon resonance. [Thesis]

Tolay, Nazife (2018) Generation of reporter cell lines by genome editing to probe p53 activity. [Thesis]

Dataset

Erman, Batu and Piepoli, Sofia and Mancini, Erika and Alt, Aaron (2018) (1 July 2018) BTB domain of mouse PATZ1. [Dataset]

Erman, Batu and Piepoli, Sofia and Mancini, Erika and Alt, Aaron (2018) (1 July 2018) Structure of the BTB domain of zebrafish PATZ1. [Dataset]