Items where Division is "Biological Sciences & Bio Eng." and Year is 2022

Article

Abiri, Naghmeh and Sinjushin, Andrey and Tekdal, Dilek and Çetiner, Selim (2022) Evaluation of the possible contribution of various regulatory genes to determination of carpel number as a potential mechanism for optimal agricultural yield. International Journal of Molecular Sciences, 23 (17). ISSN 1661-6596 (Print) 1422-0067 (Online)

Altay, Halit Yusuf and Özdemir, Fatma and Afghah, Seyedeh Ferdows and Kılınç, Zeynep and Ahmadiangollajeh, Mehri and Tschopp, Markus and Ağca, Cavit (2022) Gene regulatory and gene editing tools and their applications for retinal diseases and neuroprotection: from proof-of-concept to clinical trial. Frontiers in Neuroscience, 16 . ISSN 1662-4548 (Print) 1662-453X (Online)

Ashrafizadeh, Milad and Delfi, Masoud and Zarrabi, Ali and Bigham, Ashkan and Sharifi, Esmaeel and Rabiee, Navid and Paiva-Santos, Ana Cláudia and Kumar, Alan Prem and Tan, Shing Cheng and Hushmandi, Kiavash and Ren, Jun and Zare, Ehsan Nazarzadeh and Makvandi, Pooyan (2022) Stimuli-responsive liposomal nanoformulations in cancer therapy: pre-clinical & clinical approaches. Journal of Controlled Release, 351 . pp. 50-80. ISSN 0168-3659 (Print) 1873-4995 (Online)

Ashrafizadeh, Milad and Rabiee, Navid and Kumar, Alan Prem and Sethi, Gautam and Zarrabi, Ali and Wang, Yuzhuo (2022) Long noncoding RNAs (lncRNAs) in pancreatic cancer progression. Drug Discovery Today, 27 (8). pp. 2181-2198. ISSN 1359-6446 (Print) 1878-5832 (Online)

Avşar Esmaeilialiabadi, Bihter (2022) Effective strategies for heterologous expression of plant heterotrimeric g-protein γ Subunits without Gβ subunit partners. Protein and Peptide Letters, 29 (5). pp. 429-439. ISSN 0929-8665 (Print) 1875-5305 (Online)

Çelebi Torabfam, Gizem and Anapali, Merve and Dagistanli, Fatma Kaya and Akdemir, Ayse Seda and Aydemir, Duygu and Ulusu, Nuriye Nuray and Ulutin, Turgut and Komurcu-Bayrak, Evrim (2022) Effect of vitamin D supplementation on OPG/RANKL signalling activities in endothelial tissue damage in diet-induced diabetic rat model. Pharmacological Reports, 74 (1). pp. 124-134. ISSN 1734-1140 (Print) 2299-5684 (Online)

Çelebi Torabfam, Gizem and Yetişgin, Abuzer Alp and Erdem, Cem and Çaylı, Aziz and Kutlu, Özlem and Çetinel, Sibel (2022) A feasibility study of different commercially available serum-free mediums to enhance lentivirus and adeno-associated virus production in HEK 293 suspension cells. Cytotechnology, 74 (6). pp. 635-655. ISSN 0920-9069 (Print) 1573-0778 (Online)

Deger, Nazli and Cao, Xuemei and Selby, Christopher P. and Gulec, Saygin and Kawara, Hiroaki and Dewey, Evan B. and Wang, Li and Yang, Yanyan and Archibald, Sierra and Selçuk, Berkay and Adebali, Ogün and Sekelsky, Jeff and Sancar, Aziz and Liu, Zhenxing (2022) CSB-independent, XPC-dependent transcription-coupled repair in Drosophila. Proceedings of the National Academy of Sciences of the United States of America, 119 (9). ISSN 0027-8424 (Print) 1091-6490 (Online)

Farhadian, Mohammad and Rafat, Seyed Abbas and Mayack, Christopher and Bohlouli, Mehdi (2022) Intra- and interspecies RNA-seq based variants in the lactation process of ruminants. Animals, 12 (24). ISSN 2076-2615

Ghaffari Zaki, Asal and Erdoǧan, Yusuf C. and Akgül Çağlar, Tüba and Eroğlu, Emrah (2022) Chemogenetic approaches to dissect the role of H2O2 in redox-dependent pathways using genetically encoded biosensors. Biochemical Society Transactions, 50 (1). pp. 335-345. ISSN 0300-5127 (Print) 1470-8752 (Online)

Huang, Yanchao and Azgari, Cem and Yin, Mengdie and Chiou, Yi Ying and Lindsey-Boltz, Laura A. and Sancar, Aziz and Hu, Jinchuan and Adebali, Ogün (2022) Effects of replication domains on genomewide UV-induced DNA damage and repair. PLoS Genetics, 18 (9). ISSN 1553-7390 (Print) 1553-7404 (Online)

Hussain, Babar and Akpınar, Bala A. and Alaux, Michael and Algharib, Ahmed M. and Sehgal, Deepmala and Ali, Zulfiqar and Aradottir, Gudbjorg I. and Batley, Jacqueline and Bellec, Arnaud and Bentley, Alison R. and Cagirici, Halise B. and Cattivelli, Luigi and Choulet, Fred and Cockram, James and Desiderio, Francesca and Devaux, Pierre and Dogramaci, Münevver and Dorado, Gabriel and Dreisigacker, Susanne and Edwards, David and El-Hassouni, Khaoula and Eversole, Kellye and Fahima, Tzion and Figueroa, Melania and Gálvez, Sergio and Gill, Kulvinder S. and Govta, Liubov and Gul, Alvina and Hensel, Goetz and Hernandez, Pilar and Crespo-Herrera, Leonardo Abdiel and Ibrahim, Amir and Kilian, Benjamin and Korzun, Viktor and Krugman, Tamar and Li, Yinghui and Liu, Shuyu and Mahmoud, Amer F. and Morgounov, Alexey and Muslu, Tuğdem and Naseer, Faiza and Ordon, Frank and Paux, Etienne and Perovic, Dragan and Reddy, Gadi V.P. and Reif, Jochen Christoph and Reynolds, Matthew and Roychowdhury, Rajib and Rudd, Jackie and Sen, Taner Z. and Sukumaran, Sivakumar and Ozdemir, Bahar Sogutmaz and Tiwari, Vijay Kumar and Ullah, Naimat and Unver, Turgay and Yazar, Selami and Appels, Rudi and Budak, Hikmet (2022) Capturing wheat phenotypes at the genome level. Frontiers in Plant Science, 13 . ISSN 1664-462X (Print) 1664-462X (Online)

Karp, Igor and Lyakhovich, Alex (2022) Targeting cancer stem cells with antibiotics inducing mitochondrial dysfunction as an alternative anticancer therapy. Biochemical Pharmacology, 198 . ISSN 0006-2952 (Print) 1873-2968 (Online)

Kaya, Sezgi and Adebali, Ogün and Oztas, Onur and Sancar, Aziz (2022) Genome-wide excision repair map of cyclobutane pyrimidine dimers in arabidopsis and the roles of CSA1 and CSA2 proteins in transcription-coupled repair†. Photochemistry and Photobiology (SI), 98 (3). pp. 707-712. ISSN 0031-8655 (Print) 1751-1097 (Online)

Kutuk, Meryem Ozlem and Tufan, Ali Evren and Topal, Zehra and Acikbas, Ufuk and Guler, Gulen and Karakaş, Bahriye and Başağa, Hüveyda and Kilicaslan, Fethiye and Altintas, Ebru and Aka, Yeliz and Kutuk, Ozgur (2022) CYP450 2D6 and 2C19 genotypes in ADHD: not related with treatment resistance but with over-representation of 2C19 ultra-metabolizers. Drug Metabolism and Personalized Therapy, 37 (3). pp. 261-269. ISSN 2363-8907 (Print) 2363-8915 (Online)

Lakrat, Mohammed and Mejdoubi, El Miloud and Özdemir, Fatma and Santos, Catarina (2022) Effect of sodium silicate concentration on the physico-chemical properties of dual-setting bone-like apatite cements. Materials Today Communications, 31 . ISSN 2352-4928

Mayack, Christopher and Hakanoğlu, Haşim (2022) Honey bee pathogen prevalence and interactions within the Marmara region of Turkey. Veterinary Sciences, 9 (10). ISSN 2306-7381

Mayack, Christopher and Macherone, Anthony and Ghaffari Zaki, Asal and Filiztekin, Elif and Özkazanç, Burcu and Köprülü, Yasemin and Schick, Sassicaia J. and Eppley, Elizabeth J. and Deb, Moniher and Ambiel, Nicholas and Schafsnitz, Alexis M. and Broadrup, Robert L. (2022) Environmental exposures associated with honey bee health. Chemosphere, 286 (Part 3). ISSN 0045-6535 (Print) 1879-1298 (Online)

Piepoli, Sofia and Barakat, Sarah Mohammed Mohammed and Noğay, Liyne and Şimşek, Büşra and Akköse, Ümit and Taşkıran, Hakan and Tolay, Nazife and Gezen, Melike and Yeşilada, Canberk Yarkın and Tuncay, Mustafa and Adebali, Ogün and Atılgan, Canan and Erman, Batu (2022) Sibling rivalry among the ZBTB transcription factor family: homodimers versus heterodimers. Life Science Alliance, 5 (11). ISSN 2575-1077

Ponnurengam Malliappan, Sivakumar and Yetişgin, Abuzer Alp and Şahin, Sevilay Burcu and Demir, Ebru and Çetinel, Sibel (2022) Bone tissue engineering: anionic polysaccharides as promising scaffolds. Carbohydrate Polymers, 283 . ISSN 0144-8617 (Print) 1879-1344 (Online)

Selçuk, Berkay and Erol, İsmail and Durdağı, Serdar and Adebali, Ogün (2022) Evolutionary association of receptor-wide amino acids with G protein-coupling selectivity in aminergic GPCRs. Life Science Alliance, 5 (10). ISSN 2575-1077

Sevimli, Gülşah and Alston, Amy E. and Funk, Felix and Flühmann, Beat and Malli, Roland and Graier, Wolfgang F. and Eroğlu, Emrah (2022) Probing subcellular iron availability with genetically encoded nitric oxide biosensors. Biosensors, 12 (10). ISSN 2079-6374

Sevimli, Gülşah and Smith, Matthew J. and Akgül Çağlar, Tüba and Bilir, Şükriye and Seçilmiş, Melike and Altun, Hamza Yusuf and Yigit, Esra N. and Yang, Fan and Keeley, Thomas P. and Malli, Roland and Öztürk, Gürkan and Mann, Giovanni E. and Eroglu, Emrah (2022) Corrigendum to "Nitric oxide biosensor uncovers diminished ferrous iron-dependency of cultured cells adapted to physiological oxygen levels" [Redox Biol. 53 (2022) 102319] (Redox Biology (2022) 53, (S221323172200091X), (10.1016/j.redox.2022.102319)). Redox Biology, 54 . ISSN 2213-2317

Sevimli, Gülşah and Smith, Matthew J. and Akgül Çağlar, Tüba and Bilir, Şükriye and Seçilmiş, Melike and Altun, Hamza Yusuf and Yigit, Esra N. and Yang, Fan and Keeley, Thomas P. and Malli, Roland and Öztürk, Gürkan and Mann, Giovanni E. and Eroğlu, Emrah (2022) Nitric oxide biosensor uncovers diminished ferrous iron-dependency of cultured cells adapted to physiological oxygen levels. Redox Biology, 53 . ISSN 2213-2317 (Print) 2213-2317 (Online)

Somuncu, Berna and Ekmekcioglu, Aysegul and Antmen, Fatma Merve and Ertuzun, Tugce and Deniz, Emre and Keskin, Nazlı and Park, Joon and Yazici, Ilgu Ece and Şimşek, Büşra and Erman, Batu and Yin, Whitney and Erman, Burak and Muftuoglu, Meltem (2022) Targeting mitochondrial DNA polymerase gamma for selective inhibition of MLH1 deficient colon cancer growth. PLoS One, 17 (6). ISSN 1932-6203 (Print) 1932-6203 (Online)

Steinhorn, Benjamin and Eroğlu, Emrah and Michel, Thomas (2022) Chemogenetic approaches to probe redox pathways: implications for cardiovascular pharmacology and toxicology. Annual Review of Pharmacology and Toxicology, 62 . pp. 551-571. ISSN 0362-1642 (Print) 1545-4304 (Online)

Tekdal, Dilek and Çiftçi, Özgün Cem and Çingay, Burçin and Çetiner, Selim (2022) Isolation and characterization of the most abundant rhizobacterial species associated with Vuralia turcica (Fabaceae: Papilionoideae). Anais da Academia Brasileira de Ciencias, 94 (1). ISSN 0001-3765 (Print) 1678-2690 (Online)

Varol, Ayşegül and Sezen, Serap and Evcimen, Dilhan and Zarepour, Atefeh and Ulus, Gönül and Zarrabi, Ali and Badr, Gamal and Daştan, Sevgi Durna and Orbayoğlu, Asya Gülistan and Selamoğlu, Zeliha and Varol, Mehmet (2022) Cellular targets and molecular activity mechanisms of bee venom in cancer: recent trends and developments. Toxin Reviews, 41 (4). pp. 1382-1395. ISSN 1556-9543 (Print) 1556-9551 (Online)

Yolcu, Seher and Alavilli, Hemasundar and Ganesh, Pushpalatha and Asif, Muhammad and Kumar, Manu and Song, Kihwan (2022) An insight into the abiotic stress responses of cultivated beets (Beta vulgaris L.). Plants-Basel, 11 (1). ISSN 2223-7747

Book Section / Chapter

Selçuk, Berkay and Adebali, Ogün (2022) Common and selective signal transduction mechanisms of GPCRs. Progress in Molecular Biology and Translational Science. Elsevier.

Thesis

Al-Khodor, Jana (2022) Third-generation sequencing technology to define microbial diversity in wheat cultivated soils in Turkey. [Thesis]

Aras, Mertkaya (2022) Genetically modified antigen specific NK cells. [Thesis]

Ata, Büşra Nur (2022) Live cell imaging of redox mediated nrf2 activity using transcription factor based biosensors and chemogenetic tools. [Thesis]

Barakat, Sarah Mohammed Mohammed (2022) Isolation and characterization of nanobodies that bind the btb domain of patz1 transcription factor. [Thesis]

Ertem, İdil (2022) Effects of root mycorrhizal colonization and varied phosphorous supply on cadmium accumulation in rice plants. [Thesis]

Gezen, Melike (2022) Identification of the targets of the human transcription factor patz1. [Thesis]

Hakanoğlu, Haşim (2022) Identification of potential transcriptomic biomarkers for varroa resistance in honey bees (apis mellifera anatoliaca). [Thesis]

Muganlı, Zülal (2022) Cloning, expression, characterization, and applications of arctic pseudomonas putida origin (AFPA) antifreeze protein. [Thesis]

Özle, Mert (2022) Manipulation of synaptic pruning via the ecdysone signaling pathway and its effects on complex learning. [Thesis]

Selçuk, Berkay (2022) Evolutionary identification of residues related to G protein coupling selectivity in aminergic GPCRs/. [Thesis]

Şutova, Hande Eda (2022) Development of a nanogel based topical drug formulation for the treatment of neovascular age-related macular degeneration (nAMD). [Thesis]

Tütüncü, Yeşim (2022) Generation of a reporter-retinitis pigmentosa mouse model for retinal regeneration studies using crispr/dcas9-based artificial transcription factors. [Thesis]

Zahedimaram, Pegah (2022) The identification of the mechanisms of lrba deficiency dependent defects in regulatory t-cell function. [Thesis]