Items where Division is "Biological Sciences & Bio Eng." and Year is 2015

Article

Ajiboye, Babasola and Çakmak, İsmail and Paterson, David and De Jonge, Martin D. and Howard, Daryl L. and Stacey, Samuel P. and Torun, Ayfer A. and Aydın, Nevzat and McLaughlin, Michael J. (2015) X-ray fluorescence microscopy of zinc localization in wheat grains biofortified through foliar zinc applications at different growth stages under field conditions. Plant and Soil, 392 (1-2). pp. 357-370. ISSN 0032-079X (Print) 1573-5036 (Online)

Akpınar, Bala Anı and Kantar, Melda and Budak, Hikmet (2015) Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress. Functional and Integrative Genomics, 15 (5). pp. 587-598. ISSN 1438-793X (Print) 1438-7948 (Online)

Akpınar, Bala Anı and Lucas, Stuart J. and Vrana, Jan and Dolezel, Jaroslav and Budak, Hikmet (2015) Sequencing chromosome 5D of Aegilops tauschii and comparison with its allopolyploid descendant bread wheat (Triticum aestivum). Plant Biotechnology Journal, 13 (6). pp. 740-752. ISSN 1467-7644 (Print) 1467-7652 (Online)

Akpınar, Bala Anı and Magni, Federica and Yüce, Meral and Lucas, Stuart J. and Simkova, Hana and Safar, Jan and Vautrin, Sonia and Berges, Helene and Cattonaro, Federica and Dolezel, Jaroslav and Budak, Hikmet (2015) The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements. BMC Genomics, 16 . ISSN 1471-2164

Akpınar, Bala Anı and Yüce, Meral and Lucas, Stuart J. and Vrana, Jan and Buresova, Veronika and Dolezel, Jaroslav and Budak, Hikmet (2015) Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides. Scientific Reports, 5 . ISSN 2045-2322

Atasever Arslan, Belkıs and Yılancıoğlu, Kaan and Bekaroğlu, Maide G. and Taşkın, Emre and Altınöz, Eyup and Çetiner, Selim (2015) Cytotoxic effect of extract from Dunaliella salina against SH-SY5Y neuroblastoma cells. General Physiology and Biophysics, 34 (2). pp. 201-207. ISSN 0231-5882 (Print) 1338-4325 (Online)

Avşar, Bihter and Esmaeili Aliabadi, Danial (2015) Putative microRNA analysis of the kiwifruit actinidia chinensis through genomic data. International Journal of Life Sciences Biotechnology and Pharma Research, 4 (2). pp. 96-99. ISSN 2250-3137

Budak, Hikmet and Akpınar, Bala Anı (2015) Plant miRNAs: biogenesis, organization and origins. Functional and Integrative Genomics, 15 (5). pp. 523-531. ISSN 1438-793X (Print) 1438-7948 (Online)

Budak, Hikmet and Bulut, Reyyan Fatima and Kantar, Melda and Alptekin, Burcu (2015) MicroRNA nomenclature and the need for a revised naming prescription. Briefings in Functional Genomics (Sl) . ISSN 2041-2649 (Print) 2041-2657 (Online)

Budak, Hikmet and Hussain, Babar and Khan, Zaeema and Öztürk, Neslihan Z. and Ullah, Naimat (2015) From genetics to functional genomics: improvement in drought signaling and tolerance in wheat. Frontiers in Plant Science, 6 . ISSN 1664-462X (Print) 1664-462X (Online)

Budak, Hikmet and Kantar, Melda (2015) Harnessing NGS and big data optimally: comparison of miRNA prediction from assembled versus non-assembled sequencing data—the case of the grass aegilops tauschii complex genome. OMICS: A Journal of Integrative Biology, 19 (7). pp. 407-415. ISSN 1536-2310

Budak, Hikmet and Kantar, Melda and Bulut, Reyyan Fatima and Akpınar, Bala Anı (2015) Stress responsive miRNAs and isomiRs in cereals. Plant Science, 235 . pp. 1-13. ISSN 0168-9452

Bulusu, Krishna C. and Guha, Rajarshi and Mason, Daniel J. and Lewis, Richard P. I. and Muratov, Eugene and Motamedi, Yasaman Kalantar and Çokol, Murat and Bender, Andreas (2015) Modelling of compound combination effects and applications to efficacy and toxicity: state-of-the-art, challenges and perspectives. Drug Discovery Today . ISSN 1359-6446 (Print) 1878-5832 (Online) Published Online First http://dx.doi.org/10.1016/j.drudis.2015.09.003

Çakmak, İsmail (2015) Agronomic and genetic zinc biofortification in wheat. (Accepted)

Çetiner, Selim (2015) Bir toplantının ardından. Tarla Sera Dergisi, 5 (64). pp. 26-28. ISSN 1309-9116

Çetiner, Selim (2015) Bitki ıslahında çığır açanlar. Tarla Sera Dergisi, 5 (57). pp. 20-21. ISSN 1309-9116

Çetiner, Selim (2015) Bitkiler ve insanlar. Tarla Sera Dergisi, 5 (63). pp. 24-26. ISSN 1309-9116

Çetiner, Selim (2015) Biyoteknoloji stratejisi mi dediniz? Tarla Sera Dergisi, 5 (60). pp. 22-23. ISSN 1309-9116

Çetiner, Selim (2015) Kara tren gelmez m'ola? Tarla Sera Dergisi, 5 (58). pp. 22-23. ISSN 1309-9116

Çetiner, Selim (2015) Organiğime dokunma. Tarla Sera Dergisi, 5 (56). pp. 22-23. ISSN 1309-9116

Çetiner, Selim (2015) Organik ürünler daha lezzetli ve besleyici mi? Tarla Sera Dergisi, 5 (55). pp. 18-19. ISSN 1309-9116

Çetiner, Selim (2015) Organik ürünler daha mı güvenli? Tarla Sera Dergisi . pp. 20-21. ISSN 1309-9116

Çetiner, Selim (2015) Organik ürünler doğal mı? Tarla Sera Dergisi . pp. 18-19. ISSN 1309-9116

Çetiner, Selim (2015) Organikçilere büyük sürpriz! Tarla Sera Dergisi, 5 (59). pp. 22-23. ISSN 1309-9116

Çetiner, Selim (2015) Tarımda dönüşüm nasıl olacak? Tarla Sera Dergisi, 5 (61). pp. 22-23. ISSN 1309-9116

Çetiner, Selim (2015) Yeni bitki ıslah teknikleri ne olacak? Tarla Sera Dergisi, 5 (62). pp. 26-27. ISSN 1309-9116

David, Iulia Gabriela and Bizgan, Ana-Maria Cristina and Popa, Dana Elena and Buleandra, Mihaela and Moldovan, Zenovia and Badea, Irinel Adriana and Tekiner, Tuğçe Ayça and Başağa, Hüveyda and Ciucu, Anton A. (2015) Rapid determination of total polyphenolic content in tea samples based on caffeic acid voltammetric behaviour on a disposable graphite electrode. Food Chemistry, 173 . pp. 1059-1065. ISSN 0308-8146 (Print) 1873-7072 (Online)

Duman, Fatma Demir and Hocaoğlu, İbrahim and Öztürk, Deniz Gülfem and Gözüaçık, Devrim and Kiraz, Alper and Yağcı Acar, Havva (2015) Highly luminescent and cytocompatible cationic Ag2S NIR-emitting quantum dots for optical imaging and gene transfection. Nanoscale, 7 (26). pp. 11352-11362. ISSN 2040-3364 (Print) 2040-3372 (Online)

Janies, Daniel A. and Pomeroy, Laura W. and Krueger, Chris and Zhang, Yuqi and Şentürk, İzzet F. and Kaya, Kamer and Çatalyürek, Ümit V. (2015) Phylogenetic visualization of the spread of H7 influenza A viruses. Cladistics, 31 (6). pp. 679-691. ISSN 0748-3007 (Print) 1096-0031 (Online)

Keskin, Nazlı and Deniz, Emre and Eryılmaz, Jitka and Ün, Manolya and Altınuşak, Tuğçe and Erşahin, Tülin and Atalay, Rengül Çetin and Sakaguchi, Shinya and Ellmeier, Wilfried and Erman, Batu (2015) PATZ1 is a DNA damage-responsive transcription factor that inhibits p53 function. Molecular and Cellular Biology, 35 (10). pp. 1741-1753. ISSN 0270-7306 (Print) 1098-5549 (Online)

Khaksefidi, Reyhaneh Ebrahimi and Mirlohi, Shirin and Khalaji, Fahimeh and Fakhari, Zahra and Shiran, Behrouz and Fallahi, Hossein and Rafiei, Fariba and Budak, Hikmet and Ebrahimie, Esmaeil (2015) Differential expression of seven conserved microRNAs in response to abiotic stress and their regulatory network in Helianthus annuus. Frontiers in Plant Science, 6 . ISSN 1664-462X (Print) 1664-462X (Online)

Khan, Zaeema and Budak, Hikmet (2015) A short overview on the latest updates on cereal crop plant genome sequencing with an emphasis on cereal crops and their wild relatives. Ekin Journal of Crop Breeding and Genetics, 1 (2). pp. 1-7. ISSN 2149-1275 (Print) 2459-069X (Online)

Kippes, Nestor and Debernardi, Juan M. and Vasquez-Gross, Hans A. and Akpınar, Bala Anı and Budak, Hikmet and Kato, Kenji and Chao, Shiaoman and Akhunov, Eduard and Dubcovsky, Jorge (2015) Identification of the VERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia. Proceedings of the National Academy of Sciences, 112 (39). E5401-E5410. ISSN 0027-8424 (Print) 1091-6490 (Online)

Küçükgül, Can and Özler, Saime Burçe and İnci, İlyas and Karakaş, Hacer Ezgi and Irmak, Ster and Gözüaçık, Devrim and Taralp, Alpay and Koç, Bahattin (2015) 3D bioprinting of biomimetic aortic vascular constructs with self-supporting cells. Biotechnology and Bioengineering, 112 (4). pp. 811-821. ISSN 0006-3592 (Print) 1097-0290 (Online)

LLwellyn-Smith, Chris and Sayers, Zehra (2015) SESAME: a bright hope for the Middle East. Cern Courier .

Oral, Özlem and Çıkım, Taha Abdullah and Zuvin, Merve and Ünal, Özlem and Yağcı-Acar, Havva and Gözüaçık, Devrim and Koşar, Ali (2015) Effect of varying magnetic fields on targeted gene delivery of nucleic acid-based molecules. Annals of Biomedical Engineering, 43 (11). pp. 2816-2826. ISSN 0090-6964 (Print) 1573-9686 (Online)

Ova, Emir Ali and Kutman, Ümit Barış and Öztürk, Levent and Çakmak, İsmail (2015) High phosphorus supply reduced zinc concentration of wheat in native soil but not in autoclaved soil or nutrient solution. Plant and Soil, 393 (1-2). pp. 147-162. ISSN 0032-079X (Print) 1573-5036 (Online)

Öktem-Okullu, Sinem and Tiftikçi, Arzu and Saruç, Murat and Çiçek, Bahattin and Vardareli, Eser and Tözün, Nurdan and Kocagöz, Tanıl and Sezerman, Uğur and Yavuz, Ahmet Sinan and Sayı-Yazgan, Ayça (2015) Multiplex-PCR-based screening and computational modeling of virulence factors and t-cell mediated immunity in helicobacter pylori infections for accurate clinical diagnosis. PLoS One, 10 (8). ISSN 1932-6203

Özbey, Arzu and Karimzadehkhouei, Mehrdad and Yalçın, Sinan Eren and Gözüaçık, Devrim and Koşar, Ali (2015) Modeling of ferrofluid magnetic actuation with dynamic magnetic fields in small channels. Microfluidics and Nanofluidics, 18 (3). pp. 447-460. ISSN 1613-4982 (Print) 1613-4990 (Online)

Pajares, Marta and Jiménez-Moreno, Natalia and Dias, Irundika H.K. and Debelec, Bilge and Vucetic, Milica and Fladmark, Kari E. and Başağa, Hüveyda and Ribaric, Samo and Milisav, Irina and Cuadrado, Antonio (2015) Redox control of protein degradation. Redox Biology, 6 . pp. 409-420. ISSN 2213-2317 (Print) 2213-2317 (Online)

Ram, Hari and Sohu, V. S. and Çakmak, İsmail and Singh, Kuldeep and Buttar, G. S. and Sodhi, G. P. S. and Gill, H. S. and Bhagat, Indoo and Singh, Parminder and Dhaliwal, S. S. and Mavi, G. S. (2015) Agronomic fortification of rice and wheat grains with zinc for nutritional security. Current Science, 109 (6). pp. 1171-1176. ISSN 0011-3891

Seashore-Ludlow, Brinton and Rees, Matthew G. and Cheah, Jaime H. and Çokol, Murat and Price, Edmund V. and Coletti, Matthew E. and Jones, Victor and Bodycombe, Nicole E. and Soule, Christian K. and Gould, Joshua and Alexander, Benjamin and Li, Ava and Montgomery, Philip and Wawer, Mathias J. and Kuru, Nurdan and Kotz, Joanne D. and Hon, C. Suk-Yee and Munoz, Benito and Liefeld, Ted and Dancik, Vlado and Bittker, Joshua A. and Palmer, Michelle and Bradner, James E. and Shamji, Alykhan F. and Clemons, Paul A. and Schreiber, Stuart L. (2015) Harnessing connectivity in a large-scale small-molecule sensitivity dataset. Cancer Discovery, 5 (11). pp. 1210-1223. ISSN 2159-8274 (Print) 2159-8290 (Online)

Timuçin, Ahmet Can and Bodur, Çağrı and Başağa, Hüveyda (2015) SIRT1 contributes to aldose reductase expression through modulating NFAT5 under osmotic stress: in vitro and in silico insights. Cellular Signalling, 27 (11). pp. 2160-2172. ISSN 0898-6568 (Print) 1873-3913 (Online)

Türkeç, Aydın and Kazan, Hande and Baykut, Aykut and Lucas, Stuart J. (2015) Evalution of DNA extraction methods in order to monitor genetically modified materials in soy foodstuffs and feeds commercialised in Turkey by multiplex real-time PCR. Journal of the Science of Food and Agriculture, 95 (2). pp. 386-392. ISSN 0022-5142 (Print) 1097-0010 (Online)

Türkeç, Aydın and Kazan, Hande and Karacanlı, Burçin and Lucas, Stuart J. (2015) DNA extraction techniques compared for accurate detection of genetically modified organisms (GMOs) in maize food and feed products. Journal of Food Science and Technology, 52 (8). pp. 5164-5171. ISSN 0022-1155 (Print) 0975-8402 (Online)

Üzüşen, Doğan and Demir, Ebru and Perk, Osman Yavuz and Oral, Özlem and Ekici, Sinan and Ünel, Mustafa and Gözüaçık, Devrim and Koşar, Ali (2015) Assessment of probe-to-specimen distance effect in kidney stone treatment with hydrodynamic cavitation. Journal of Medical Devices, 9 (3). ISSN 1932-6181 (Print) 1932-619X (Online)

Wang, Xiao-Zhong and Liu, Dun-Yi and Zhang, Wei and Wang, Cheng-Ju and Çakmak, İsmail and Zou, Chun-Qin (2015) An effective strategy to improve grain zinc concentration of winter wheat, Aphids prevention and farmers' income. Field Crops Research, 184 . pp. 74-79. ISSN 0378-4290

Yavuz, Ahmet Sinan and Sözer, Namık Berk and Sezerman, Osman Uğur (2015) Prediction of neddylation sites from protein sequences and sequence-derived properties. BMC Bioinformatics, 16 (Supple). ISSN 1471-2105

Yüce, Meral and Ullah, Naimat and Budak, Hikmet (2015) Trends in aptamer selection methods and applications. Analyst, 140 (16). pp. 5379-5399. ISSN 0003-2654 (Print) 1364-5528 (Online)

Yüce, Meral and Uysal, Ebru and Budak, Hikmet (2015) Amplification yield enhancement of short DNA templates using bulk and surface-attached amine-functionalized single-wall carbon nanotubes. Applied Surface Science, 349 . pp. 147-155. ISSN 0169-4332 (Print) 1873-5584 (Online)

Papers in Conference Proceedings

Akpınar, Bala Anı and Canlı, Özge and Budak, Hikmet (2015) Zn-deficiency responsive transcripts in Agrostis species revealed by mRNA differential display. In: 8th International Symposium on the Molecular Breeding of Forage and Turf, İstanbul, Turkey

Elitaş, Meltem and Fan, Rong (2015) Heterogeneity in glioma: macrophage interaction and its quantification in terms of protein expression. In: Cellular Heterogeneity: Role of Variability and Noise in Biological Decision-Making, Germany

Hatem, Ayat and Kaya, Kamer and Parvin, Jeffrey and Huang, Kun and Çatalyürek, Ümit (2015) MICA: microRNA integration for active module discovery. In: 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, Atlanta, GA

Kahraman, Kadriye and Asif, Muhammad and Yılmaz, Özlem and Öztürk, Levent (2015) Combined effects of elevated carbon dioxide and K and Mg deficiencies on wheat plants. In: 4th International Conference on Agriculture and Horticulture (AGRI), Beijing, China

Kim, Junyoung and Karakaş Schüller, Hacer Ezgi and Choi, Yong-Jun and Gözüaçık, Devrim and Cho, Yoon-Kyoung (2015) Kinetic study of autophagy activation in fibroblasts interacted with single tumor cell in microfluidic platform. In: Annual Autumn Meeting of The Korean BioChip Society, Gangwon, S. Korea

Kim, Junyoung and Karakaş Schüller, Hacer Ezgi and Gözüaçık, Devrim and Cho, Yoon-Kyoung (2015) Single cell analysis on the role of TGF-β1 in autophagy of tumor cell-interacted stroma fibroblasts. In: 19th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2015), Gyeongju, South Korea

Oral, Özlem and Yüce, Aysel and Dökmeci, Serap and Gözüaçık, Devrim (2015) Involvement of autophagy abnormalities in Gaucher lysosomal storage disease. In: ICDS (International Cell Death Society Presents): Implementation of the Knowledge of Cell Death, Prague, Czech Republic

Weinstein, Zohar and Kuru, Nurdan and Clemons, Paul and Roth, Frederick and Çokol, Murat (2015) Synergy and selectivity of antifungal small molecule combinations. In: FASEB Microbiology Meeting,

Book

Çetiner, Selim (2015) Tarım ürünleri ihracatında biyogüvenlik kanunu ile yönetmeliklerin neden olduğu sıkıntılar ve çözüm önerileri. OAİB (Orta Anadolu İhracatçılar Birliği), Ankara. ISBN 9-786058-438002

Book Section / Chapter

Arachiche, Amal and Gözüaçık, Devrim (2015) Regulation of autophagy in health and disease. In: Fuentes, Jose M., (ed.) Toxicity and Autophagy in Neurofegenerative Disorders. Current Topics in Neurotoxicity, 9. Springer, Switzerland, pp. 1-24. ISBN 978-3-319-13938-8 (Print) 978-3-319-13939-5 (Online)

Deveci, Mehmet and Küçüktunç, Onur and Eren, Kemal and Bozdağ, Doruk and Kaya, Kamer and Çatalyürek, Ümit (2015) Querying co-regulated genes on diverse gene expression datasets via biclustering. In: Guzzi, Pietro Hiram, (ed.) Microarray Data Analysis. Methods in Molecular Biology. Humana Press, New York, NY, USA. (Accepted)

Gözüaçık, Devrim and Kığ, Cenk (2015) Cell death and autophagy: a historical perspective. In: Lockshin, Richard A. and Zakeri, Zahra, (eds.) 20 Years of Cell Death. International Cell Death Society, New York, pp. 222-244. ISBN 978-0-9894674-5-2

Tekirdağ, Kumsal Ayşe and Öztürk, Deniz Gülfem and Gözüaçık, Devrim (2015) Regulation of autophagy by microRNAs. In: Hayat, M. A., (ed.) Autophagy: Cancer, Other Pathologies, Inflammation, Immunity, Infection, and Aging. Regulation of Autophagy and Selective Autophagy, 6. Elsevier Academic Press, The Netherlands, pp. 85-101. ISBN 9780128010327 (Print) 9780128010532 (Online)

Thesis

Adalı, Deniz (2015) Role of miR156 and miR171 in drought response of tobacco. [Thesis]

Akpınar, Bala Anı (2015) Next-generation sequencing and physical mapping of wheat chromosome 5D and comparison with its wild progenitor. [Thesis]

Al-Murtadha, Asma Abdullah Abdulwahab (2015) Microscopic analysis of aneuploidy induced by the mutation of the CCDC124 gene. [Thesis]

Canpolat, Baran (2015) Covalent modification of cellulases for textile biofinishing. [Thesis]

Ceylan, Yasemin (2015) Changes in growth and magnesium concentration of wheat and coffee plants grown under various magnesium and water stress treatments. [Thesis]

Kantar, Melda (2015) Diversity of microRNAs and genes towards development of drought tolerant wheat. [Thesis]

Özcan, Ahsen (2015) Modeling of the mechanism of the glucocorticoid resistance using CRISPR/Cas9 mediated genome editing. [Thesis]

Tekdal, Dilek (2015) Studies on molecular and genetic characterization of the genes responsible for the multicarpellary gynoecium in thermopsis turcica. [Thesis]

Timuçin, Ahmet Can (2015) Identification of SIRT1 as a novel regulator of NFAT5 dependent aldose reductase expression under osmatic stress. [Thesis]

Uysal, Ebru (2015) Impacts of single-walled carbon nanotubes on polymerase chain reaction. [Thesis]

Vuruşaner Aktaş, Beyza (2015) Survival signals induced by cholesterol oxidation by-products in atherosclerosis. [Thesis]

Zakharyuta, Anastasia (2015) Nanosized crosslinked protein aggregates (nano-CLPA). [Thesis]