Items where Author is "Adebali, Ogün"

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Number of items: 24.

Article

Selçuk, Berkay and Aksu, Tuana and Dereli, Onur and Adebali, Ogün (2023) Downregulated NPAS4 in multiple brain regions is associated with major depressive disorder. Scientific Reports, 13 (1). ISSN 2045-2322

Akköse, Ümit and Adebali, Ogün (2023) Boquila: NGS read simulator to eliminate read nucleotide bias in sequence analysis. Turkish Journal of Biology, 47 (2). pp. 141-157. ISSN 1300-0152 (Print) 1303-6092 (Online)

Akköse, Ümit and Adebali, Ogün (2023) The interplay of 3D genome organization with UV-induced DNA damage and repair. Journal of Biological Chemistry, 299 (5). ISSN 0021-9258 (Print) 1083-351X (Online)

Adebali, Ogün and Yang, Yanyan and Neupane, Pradeep and Dike, Nneka I. and Boltz, Julia L. and Kose, Cansu and Braunstein, Miriam and Selby, Christopher P. and Sancar, Aziz and Lindsey-Boltz, Laura A. (2023) The Mfd protein is the transcription-repair coupling factor (TRCF) in Mycobacterium smegmatis. Journal of Biological Chemistry, 299 (3). ISSN 0021-9258 (Print) 1083-351X (Online)

Nabi, Afshan and Dilekoğlu, Berke and Adebali, Ogün and Taştan, Öznur (2023) Discovering misannotated lncRNAs using deep learning training dynamics. Bioinformatics (Oxford, England), 39 (1). ISSN 1367-4803 (Print) 1367-4811 (Online)

Piepoli, Sofia and Barakat, Sarah Mohammed Mohammed and Noğay, Liyne and Şimşek, Büşra and Akköse, Ümit and Taşkıran, Hakan and Tolay, Nazife and Gezen, Melike and Yeşilada, Canberk Yarkın and Tuncay, Mustafa and Adebali, Ogün and Atılgan, Canan and Erman, Batu (2022) Sibling rivalry among the ZBTB transcription factor family: homodimers versus heterodimers. Life Science Alliance, 5 (11). ISSN 2575-1077

Selçuk, Berkay and Erol, İsmail and Durdağı, Serdar and Adebali, Ogün (2022) Evolutionary association of receptor-wide amino acids with G protein-coupling selectivity in aminergic GPCRs. Life Science Alliance, 5 (10). ISSN 2575-1077

Huang, Yanchao and Azgari, Cem and Yin, Mengdie and Chiou, Yi Ying and Lindsey-Boltz, Laura A. and Sancar, Aziz and Hu, Jinchuan and Adebali, Ogün (2022) Effects of replication domains on genomewide UV-induced DNA damage and repair. PLoS Genetics, 18 (9). ISSN 1553-7390 (Print) 1553-7404 (Online)

Kuru, Nurdan and Dereli, Onur and Akkoyun, Emrah and Bircan, Aylin and Taştan, Öznur and Adebali, Ogün (2022) PHACT: phylogeny-aware computing of tolerance for missense mutations. Molecular Biology and Evolution, 39 (6). ISSN 0737-4038 (Print) 1537-1719 (Online)

Kaya, Sezgi and Adebali, Ogün and Oztas, Onur and Sancar, Aziz (2022) Genome-wide excision repair map of cyclobutane pyrimidine dimers in arabidopsis and the roles of CSA1 and CSA2 proteins in transcription-coupled repair†. Photochemistry and Photobiology (SI), 98 (3). pp. 707-712. ISSN 0031-8655 (Print) 1751-1097 (Online)

Deger, Nazli and Cao, Xuemei and Selby, Christopher P. and Gulec, Saygin and Kawara, Hiroaki and Dewey, Evan B. and Wang, Li and Yang, Yanyan and Archibald, Sierra and Selçuk, Berkay and Adebali, Ogün and Sekelsky, Jeff and Sancar, Aziz and Liu, Zhenxing (2022) CSB-independent, XPC-dependent transcription-coupled repair in Drosophila. Proceedings of the National Academy of Sciences of the United States of America, 119 (9). ISSN 0027-8424 (Print) 1091-6490 (Online)

Akköse, Ümit and Kaya, Veysel Oğulcan and Lindsey-Boltz, Laura and Karagöz, Zeynep and Brown, Adam D. and Larsen, Peter A. and Yoder, Anne D. and Sancar, Aziz and Adebali, Ogün (2021) Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events. BMC Genomics, 22 (1). ISSN 1471-2164 (Print) 1471-2164 (Online)

Özçelik, Elif and Kuru, Nurdan and Adebali, Ogün (2021) Phylostat: a web-based tool to analyze paralogous clade divergence in phylogenetic trees. Turkish Journal of Biology, 45 (6). pp. 667-673. ISSN 1300-0152 (Print) 1303-6092 (Online)

Kose, Melis and Isik, Esra and Aykut, Ayça and Durmaz, Asude and Kose, Engin and Ersoy, Melike and Diniz, Gulden and Adebali, Ogün and Ünalp, Aycan and Yilmaz, Ünsal and Karaoǧlu, Pakize and Edizer, Selvinaz and Tekin, Hande Gazeteci and Özdemir, Taha Reşid and Atik, Tahir and Onay, Hüseyin and Özklnay, Ferda (2021) The utility of next-generation sequencing technologies in diagnosis of Mendelian mitochondrial diseases and reflections on clinical spectrum. Journal of Pediatric Endocrinology and Metabolism, 34 (4). pp. 417-430. ISSN 0334-018X (Print) 2191-0251 (Online)

Azgari, Cem and Kılınç, Zeynep and Turhan, Berk and Çirci, Defne and Adebali, Ogün (2021) The mutation profile of SARS-CoV-2 is primarily shaped by the host antiviral defense. Viruses, 13 (3). ISSN 1999-4915

Kose, Melis and Canda, Ebru and Kagnici, Mehtap and Aykut, Ayça and Adebali, Ogün and Durmaz, Asude and Bircan, Aylin and Diniz, Gulden and Eraslan, Cenk and Kose, Engin and Ünalp, Aycan and Yılmaz, Ünsal and Ozyilmaz, Berk and Özdemir, Taha Reşid and Atik, Tahir and Uçar, Sema Kalkan and McFarland, Robert and Taylor, Robert W. and Brown, Garry K. and Çoker, Mahmut and Özkınay, Ferda (2020) SURF1 related Leigh syndrome: clinical and molecular findings of 16 patients from Turkey. Molecular Genetics and Metabolism Reports, 25 . ISSN 2214-4269

Piepoli, Sofia and Shamloo, Bahar and Bircan, Aylin and Adebali, Ogün and Erman, Batu (2020) Molecular biology of sars-cov-2 [Sars-cov-2'nin moleküler biyolojisi]. Turkish Journal of Immunology, 8 (2). pp. 73-88. ISSN 1301-109X

Adebali, Ogün and Bircan, Aylin and Çirci, Defne and İşlek, Burak and Kilinçer, Zeynep and Selçuk, Berkay and Turhan, Berk (2020) Phylogenetic analysis of sars-cov-2 genomes in Turkey. Turkish Journal of Biology (SI), 44 (3). pp. 146-156. ISSN 1300-0152 (Print) 1303-6092 (Online)

Gumerov, Vadim M. and Ortega, Davi R. and Adebali, Ogün and Ulrich, Luke E. and Zhulin, Igor B. (2020) MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems. Nucleic Acid Research, 48 (D1). D459-D464. ISSN 0305-1048 (Print) 1362-4962 (Online)

Li, Wentao and Liu, Wenjie and Kakoki, Ayano and Wang, Rujin and Adebali, Ogün and Jiang, Yuchao and Sancar, Aziz (2019) Nucleotide excision repair capacity increases during differentiation of human embryonic carcinoma cells into neurons and muscle cells. Journal of Biological Chemistry, 294 (15). pp. 5914-5922. ISSN 0021-9258 (Print) 1083-351X (Online)

Li, Wentao and Liu, Wenjie and Kakoki, Ayano and Wang, Rujin and Adebali, Ogün and Jiang, Yuchao and Sancar, Aziz (2019) Differential damage and repair of anti-cancer drug cisplatin induced DNA-adducts across mouse organs. (Accepted)

Askar, Yimit and Adebali, Ogün and Sancar, Aziz and Jiang, Yuchao (2019) Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs. Nature Communicaitons, 10 (1). ISSN 2041-1723

Hu, Jinchuan and Li, Wentao and Adebali, Ogün and Yang, Yanyan and Öztaş, Onur and Selby, Christopher P. and Sancar, Aziz (2019) Genome-wide mapping of nucleotide excision repair with XR-seq. Nature Protocols, 14 (1). pp. 248-282. ISSN 1754-2189 (Print) 1750-2799 (Online)

Book Section / Chapter

Selçuk, Berkay and Adebali, Ogün (2022) Common and selective signal transduction mechanisms of GPCRs. Progress in Molecular Biology and Translational Science. Elsevier.

This list was generated on Thu Mar 28 20:18:20 2024 +03.