Items where Division is "Biological Sciences & Bio Eng." and Year is 2021

Article

Abadi, Asal Jalal and Zarrabi, Ali and Gholami, Mohammad Hossein and Mirzaei, Sepideh and Hashemi, Farid and Zabolian, Amirhossein and Entezari, Maliheh and Hushmandi, Kiavash and Ashrafizadeh, Milad and Khan, Haroon and Kumar, Alan Prem (2021) Small in size, but large in action: micrornas as potential modulators of pten in breast and lung cancers. Biomolecules, 11 (2). ISSN 2218-273X

Aghaei, Mahmoud and Dastghaib, Sanaz and Aftabi, Sajjad and Aghanoori, Mohamad Reza and Alizadeh, Javad and Mokarram, Pooneh and Mehrbod, Parvaneh and Ashrafizadeh, Milad and Zarrabi, Ali and McAlinden, Kielan Darcy and Eapen, Mathew Suji and Sohal, Sukhwinder Singh and Sharma, Pawan and Zeki, Amir A. and Ghavami, Saeid (2021) The ER stress/upr axis in chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis. Life, 11 (1). ISSN 2075-1729

Aka, Yeliz and Karakaş, Bahriye and Acikbas, Ufuk and Başağa, Hüveyda and Gül, Özgür and Kütük, Özgür (2021) Kinome-wide RNAi screening for mediators of ABT-199 resistance in breast cancer cells identifies Wee1 as a novel therapeutic target. International Journal of Biochemistry and Cell Biology, 137 . ISSN 1357-2725 (Print) 1878-5875 (Online)

Akköse, Ümit and Kaya, Veysel Oğulcan and Lindsey-Boltz, Laura and Karagöz, Zeynep and Brown, Adam D. and Larsen, Peter A. and Yoder, Anne D. and Sancar, Aziz and Adebali, Ogün (2021) Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events. BMC Genomics, 22 (1). ISSN 1471-2164 (Print) 1471-2164 (Online)

Akülkü, İrem and Ghanem, Saleh Bader Saleh and Filiztekin, Elif and Suwannapong, Guntima and Mayack, Christopher (2021) Age-dependent honey bee appetite regulation is mediated by trehalose and octopamine baseline levels. Insects, 12 (10). ISSN 2075-4450

Ashrafizadeh, Milad and Delfi, Masoud and Hashemi, Farid and Zabolian, Amirhossein and Saleki, Hossein and Bagherian, Morteza and Azami, Negar and Farahani, Mahdi Vasheghani and Sharifzadeh, Seyed Omid and Hamzehlou, Soodeh and Hushmandi, Kiavash and Makvandi, Pooyan and Zarrabi, Ali and Hamblin, Michael R. and Varma, Rajender S. (2021) Biomedical application of chitosan-based nanoscale delivery systems: potential usefulness in siRNA delivery for cancer therapy. Carbohydrate Polymers, 260 . ISSN 0144-8617 (Print) 1879-1344 (Online)

Ashrafizadeh, Milad and Zarrabi, Ali and Hushmandi, Kiavash and Hashemi, Farid and Moghadam, Ebrahim Rahmani and Owrang, Marzieh and Hashemi, Fardin and Makvandi, Pooyan and Goharrizi, Mohammad Ali Sheikh Beig and Najafi, Masoud and Khan, Haroon (2021) Lung cancer cells and their sensitivity/resistance to cisplatin chemotherapy: role of microRNAs and upstream mediators. Cellular Signalling, 78 . ISSN 0898-6568 (Print) 1873-3913 (Online)

Ashrafizadeh, Milad and Zarrabi, Ali and Hushmandi, Kiavash and Moghadam, Ebrahim Rahmani and Hashemi, Farid and Daneshi, Salman and Hashemi, Fardin and Tavakol, Shima and Mohammadinejad, Reza and Najafi, Masoud and Dudha, Namrata and Garg, Manoj (2021) C-myc signaling pathway in treatment and prevention of brain tumors. Current Cancer Drug Targets, 21 (1). pp. 2-20. ISSN 1568-0096 (Print) 1873-5576 (Online)

Ashrafizadeh, Milad and Zarrabi, Ali and Mirzaei, Sepideh and Hashemi, Farid and Samarghandian, Saeed and Zabolian, Amirhossein and Hushmandi, Kiavash and Ang, Hui Li and Sethi, Gautam and Kumar, Alan Prem and Ahn, Kwang Seok and Nabavi, Noushin and Khan, Haroon and Makvandi, Pooyan and Varma, Rajender S. (2021) Gallic acid for cancer therapy: Molecular mechanisms and boosting efficacy by nanoscopical delivery. Food and Chemical Toxicology, 157 . ISSN 0278-6915 (Print) 1873-6351 (Online)

Azgari, Cem and Kılınç, Zeynep and Turhan, Berk and Çirci, Defne and Adebali, Ogün (2021) The mutation profile of SARS-CoV-2 is primarily shaped by the host antiviral defense. Viruses, 13 (3). ISSN 1999-4915

Berber, Burak and Aydin, Cihan and Kocabas, Fatih and Guney-Esken, Gulen and Yilancioglu, Kaan and Karadag-Alpaslan, Medine and Çalıseki, Mehmet and Yuce, Melek and Demir, Sevda and Tastan, Cihan (2021) Gene editing and RNAi approaches for COVID-19 diagnostics and therapeutics. Gene Therapy, 28 (6). pp. 290-305. ISSN 0969-7128 (Print) 1476-5462 (Online)

Collins, John A. and Kapustina, Maryna and Bolduc, Jesalyn A. and Pike, James F.W. and Diekman, Brian O. and Mix, Kimberlee and Chubinskaya, Susan and Eroğlu, Emrah and Michel, Thomas and Poole, Leslie B. and Furdui, Cristina M. and Loeser, Richard F. (2021) Sirtuin 6 (SIRT6) regulates redox homeostasis and signaling events in human articular chondrocytes. Free Radical Biology and Medicine, 166 . pp. 90-103. ISSN 0891-5849 (Print) 1873-4596 (Online)

Erdoğan, Yusuf Ceyhun and Altun, Hamza Yusuf and Seçilmiş, Melike and Ata, Büşra Nur and Sevimli, Gülşah and Çokluk, Zeynep and Ghaffari Zaki, Asal and Sezen, Serap and Akgul Caglar, Tuba and Sevgen, İlker and Steinhorn, Benjamin and Ai, Huiwang and Öztürk, Gürkan and Belousov, Vsevelod V. and Michel, Thomas and Eroğlu, Emrah (2021) Complexities of the chemogenetic toolkit: differential mDAAO activation by D-amino substrates and subcellular targeting. Free Radical Biology and Medicine, 177 . pp. 132-142. ISSN 0891-5849 (Print) 1873-4596 (Online)

Fallahi, Farzaneh and Borran, Sarina and Ashrafizadeh, Milad and Zarrabi, Ali and Pourhanifeh, Mohammad Hossein and Khaksary Mahabady, Mahmood and Sahebkar, Amirhossein and Mirzaei, Hamed (2021) Curcumin and inflammatory bowel diseases: from in vitro studies to clinical trials. Molecular Immunology, 130 . pp. 20-30. ISSN 0161-5890 (Print) 1872-9142 (Online)

Farhadian, Mohammad and Rafat, Seyed Abbas and Panahi, Bahman and Mayack, Christopher (2021) Author Correction: Weighted gene co-expression network analysis identifies modules and functionally enriched pathways in the lactation process (Scientific Reports, (2021), 11, 1, (2367), 10.1038/s41598-021-81888-z). Scientific Reports, 11 (1). ISSN 2045-2322

Farhadian, Mohammad and Rafat, Seyed Abbas and Panahi, Bahman and Mayack, Christopher (2021) Weighted gene co-expression network analysis identifies modules and functionally enriched pathways in the lactation process. Scientific Reports, 11 (1). ISSN 2045-2322

Geng, Guotao and Çakmak, İsmail and Ren, Tao and Lu, Zhifeng and Lu, Jianwei (2021) Effect of magnesium fertilization on seed yield, seed quality, carbon assimilation and nutrient uptake of rapeseed plants. Field Crops Research, 264 . ISSN 0378-4290 (Print) 1872-6852 (Online)

Grujcic, Djordje and Yazıcı, Mustafa Atilla and Tutuş, Yusuf and Çakmak, İsmail and Singh, Bal Ram (2021) Biofortification of silage maize with zinc, iron and selenium as affected by nitrogen fertilization. Plants, 10 (2). ISSN 2223-7747

Hussain, Yaseen and Mirzaei, Sepideh and Ashrafizadeh, Milad and Zarrabi, Ali and Hushmandi, Kiavash and Khan, Haroon and Daglia, Maria (2021) Quercetin and its nano-scale delivery systems in prostate cancer therapy: paving the way for cancer elimination and reversing chemoresistance. Cancers, 13 (7). ISSN 2072-6694

Karakaş, Bahriye and Aka, Yeliz and Giray, Aslı and Temel, Sehime Gulsun and Acikbas, Ufuk and Başağa, Hüveyda and Gul, Ozgur and Kutuk, Ozgur (2021) Mitochondrial estrogen receptors alter mitochondrial priming and response to endocrine therapy in breast cancer cells. Cell Death Discovery, 7 (1). ISSN 2058-7716

Kose, Melis and Isik, Esra and Aykut, Ayça and Durmaz, Asude and Kose, Engin and Ersoy, Melike and Diniz, Gulden and Adebali, Ogün and Ünalp, Aycan and Yilmaz, Ünsal and Karaoǧlu, Pakize and Edizer, Selvinaz and Tekin, Hande Gazeteci and Özdemir, Taha Reşid and Atik, Tahir and Onay, Hüseyin and Özklnay, Ferda (2021) The utility of next-generation sequencing technologies in diagnosis of Mendelian mitochondrial diseases and reflections on clinical spectrum. Journal of Pediatric Endocrinology and Metabolism, 34 (4). pp. 417-430. ISSN 0334-018X (Print) 2191-0251 (Online)

Lenaers, Guy and Neutzner, Albert and Le Dantec, Yannick and Jüschke, Christoph and Xiao, Ting and Decembrini, Sarah and Swirski, Sebastian and Kieninger, Sinja and Ağca, Cavit and Kim, Ungsoo S. and Reynier, Pascal and Yu-Wai-Man, Patrick and Neidhardt, John and Wissinger, Bernd (2021) Dominant optic atrophy: culprit mitochondria in the optic nerve. Progress in Retinal and Eye Research, 83 . ISSN 1350-9462 (Print) 1873-1635 (Online)

Liskova, Alena and Samec, Marek and Koklesova, Lenka and Samuel, Samson M. and Zhai, Kevin and Al-Ishaq, Raghad Khalid and Abotaleb, Mariam and Nosal, Vladimir and Kajo, Karol and Ashrafizadeh, Milad and Zarrabi, Ali and Brockmueller, Aranka and Shakibaei, Mehdi and Sabaka, Peter and Mozos, Ioana and Ullrich, David and Prosecky, Robert and La Rocca, Giampiero and Caprnda, Martin and Büsselberg, Dietrich and Rodrigo, Luis and Kruzliak, Peter and Kubatka, Peter (2021) Flavonoids against the SARS-CoV-2 induced inflammatory storm. Biomedicine and Pharmacotherapy, 138 . ISSN 0753-3322 (Print) 1950-6007 (Online)

Lucas, Stuart J. and Kahraman, Kadriye and Avşar Esmaeilialiabadi, Bihter and Buggs, Richard J.A. and Bilge, İpek (2021) A chromosome-scale genome assembly of European hazel (Corylus avellana L.) reveals targets for crop improvement. Plant Journal, 105 (5). pp. 1413-1430. ISSN 0960-7412 (Print) 1365-313X (Online)

Mayack, Christopher and Broadrup, Robert L. and Schick, Sassicaia J. and Eppley, Elizabeth J. and Khan, Zaeema and MacHerone, Anthony (2021) Increased alarm pheromone component is associated with Nosema ceranae infected honeybee colonies. Royal Society Open Science, 8 (4). ISSN 2054-5703

Muslu, Tuğdem and Akpinar, Bala Ani and Kaya, Sezgi and Yüce, Meral and Budak, Hikmet (2021) Comparative analysis of coding and non-coding features within insect tolerance loci in wheat with their homologs in cereal genomes. International Journal of Molecular Sciences, 22 (22). ISSN 1661-6596 (Print) 1422-0067 (Online)

Muslu, Tuğdem and Kaya, Sezgi and Akpinar, Bala Ani and Yüce, Meral and Budak, Hikmet (2021) Pan-genome mirnomics in brachypodium. Plants, 10 (5). ISSN 2223-7747

Naree, Sanchai and Ponkit, Rujira and Chotiaroonrat, Evada and Mayack, Christopher and Suwannapong, Guntima (2021) Propolis extract and chitosan improve health of nosema ceranae infected giant honey bees, apis dorsata fabricius, 1793. Pathogens, 10 (7). ISSN 2076-0817

Okan, İskalen Cansu and Ahmadiangollajeh, Mehri and Tütüncü, Yeşim and Altay, Halit Yusuf and Ağca, Cavit (2021) Digital droplet PCR method for the quantification of AAV transduction efficiency in murine retina. Journal of visualized experiments : JoVE (178). ISSN 1940-087X

Oztolan-Erol, Nihal and Helmstetter, Andrew J. and İnan, Asuman and Buggs, Richard J.A. and Lucas, Stuart J. (2021) Unraveling genetic diversity amongst european hazelnut (corylus avellana l.) varieties in Turkey. Frontiers in Plant Science, 12 . ISSN 1664-462X (Print) 1664-462X (Online)

Özçelik, Elif and Kuru, Nurdan and Adebali, Ogün (2021) Phylostat: a web-based tool to analyze paralogous clade divergence in phylogenetic trees. Turkish Journal of Biology, 45 (6). pp. 667-673. ISSN 1300-0152 (Print) 1303-6092 (Online)

Ponkit, Rujira and Naree, Sanchai and Mayack, Christopher and Suwannapong, Guntima (2021) The pathological effects of a Nosema ceranae infection in the giant honey bee, Apis dorsata Fabricius, 1793. Journal of Invertebrate Pathology, 185 . ISSN 0022-2011 (Print) 1096-0805 (Online)

Pourbagher-Shahri, Ali Mohammad and Farkhondeh, Tahereh and Ashrafizadeh, Milad and Talebi, Marjan and Samargahndian, Saeed (2021) Curcumin and cardiovascular diseases: focus on cellular targets and cascades. Biomedicine and Pharmacotherapy, 136 . ISSN 0753-3322 (Print) 1950-6007 (Online)

Rabanus-Wallace, M. Timothy and Hackauf, Bernd and Mascher, Martin and Lux, Thomas and Wicker, Thomas and Gundlach, Heidrun and Baez, Mariana and Houben, Andreas and Mayer, Klaus F.X. and Guo, Liangliang and Poland, Jesse and Pozniak, Curtis J. and Walkowiak, Sean and Melonek, Joanna and Praz, Coraline R. and Schreiber, Mona and Budak, Hikmet and Heuberger, Matthias and Steuernagel, Burkhard and Wulff, Brande and Börner, Andreas and Byrns, Brook and Čížková, Jana and Fowler, D. Brian and Fritz, Allan and Himmelbach, Axel and Kaithakottil, Gemy and Keilwagen, Jens and Keller, Beat and Konkin, David and Larsen, Jamie and Li, Qiang and Myśków, Beata and Padmarasu, Sudharsan and Rawat, Nidhi and Sesiz, Uğur and Kaya, Sezgi and Sharpe, Andy and Šimková, Hana and Small, Ian and Swarbreck, David and Toegelová, Helena and Tsvetkova, Natalia and Voylokov, Anatoly V. and Vrána, Jan and Bauer, Eva and Bolibok-Bragoszewska, Hanna and Doležel, Jaroslav and Hall, Anthony and Jia, Jizeng and Korzun, Viktor and Laroche, André and Ma, Xue Feng and Ordon, Frank and Özkan, Hakan and Rakoczy-Trojanowska, Monika and Scholz, Uwe and Schulman, Alan H. and Siekmann, Dörthe and Stojałowski, Stefan and Tiwari, Vijay K. and Spannagl, Manuel and Stein, Nils (2021) Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nature Genetics, 53 (4). pp. 564-573. ISSN 1061-4036 (Print) 1546-1718 (Online)

Seçilmiş, Melike and Altun, Hamza Yusuf and Pilic, Johannes and Erdoğan, Yusuf Ceyhun and Çokluk, Zeynep and Ata, Büşra Nur and Sevimli, Gülşah and Ghaffari Zaki, Asal and Yigit, Esra Nur and Öztürk, Gürkan and Malli, Roland and Eroğlu, Emrah (2021) A co-culture-based multiparametric imaging technique to dissect local h2o2 signals with targeted hyper7. Biosensors, 11 (9). ISSN 2079-6374

Toraman, Bayram and Bilginer, Samiye Çilem and Hesapçıoğlu, Selma Tural and Göker, Zeynep and Soykam, Hüseyin Okan and Ergüner, Bekir and Dinçer, Tuba and Yıldız, Gökhan and Ünsal, Serbülent and Kasap, Burak Kaan and Kandil, Sema and Kalay, Ersan (2021) Finding underlying genetic mechanisms of two patients with autism spectrum disorder carrying familial apparently balanced chromosomal translocations. Journal of Gene Medicine, 23 (4). ISSN 1099-498X (Print) 1521-2254 (Online)

Yüce, Meral and Filiztekin, Elif and Özkaya, Korin Gasia (2021) COVID-19 diagnosis - a review of current methods. Biosensors and Bioelectronics, 172 . ISSN 0956-5663 (Print) 1873-4235 (Online)

Yüce, Meral and Sert, Fatma and Torabfam, Milad and Parlar, Ayhan and Gürel, Büşra and Çakır, Nilüfer and Dağlıkoca, Duygu E. and Khan, Mansoor A. and Çapan, Yılmaz (2021) Fractionated charge variants of biosimilars: a review of separation methods, structural and functional analysis. Analytica Chimica Acta, 1152 . ISSN 0003-2670 (Print) 1873-4324 (Online)

Papers in Conference Proceedings

Eroğlu, Emrah (2021) Multiparametric imaging approaches to dissect the role of ROS and eNOS signaling pathways using chemogenetic tools and genetically encoded biosensors. In: 45th FEBS Congress, Molecules of Life: Towards New Horizons, Ljubljana, Slovenia

Book Section / Chapter

Çiftçi, Cem and Tekdal, Dilek and Çetiner, Selim (2021) The importance of plant growth-promoting rhizobacteria for plant productivity. In: Singh, Vijay Pratap and Tripathi, Durgesh Kumar and Bhardwaj, Renu and Singh, Samiksha and Prasad, Sheo Mohan and Chauhan, Devendra Kumar, (eds.) Abiotic Stress and Legumes: Tolerance and Management. Elsevier, -, pp. 69-80. ISBN 9780128153567 (Print) 9780128153550 (Online)

Yaribeygi, Habib and Ashrafizadeh, Milad and Sathyapalan, Thozhukat and Jamialahmadi, Tannaz and Sahebkar, Amirhossein (2021) Naturally occurring SGLT2 inhibitors: a review. In: Sahebkar, Amirhossein and Sathyapalan, Thozhukat, (eds.) Natural Products and Human Diseases: Pharmacology, Molecular Targets, and Therapeutic Benefits. Advances in Experimental Medicine and Biology; 1328. Springer, Switzerland, pp. 523-530. ISBN 978-3-030-73233-2 (Print) 978-3-030-73234-9 (Online)

Thesis

Akülkü, İrem (2021) Mapping the distribution of the octopamine beta receptor subtype-2 in the honeybee (apis mellifera) brain. [Thesis]

Cin, Ayşe Nur (2021) Identifying characteristic properties and antioxidant effect of quercetin loaded titanium dioxide nanoparticles. [Thesis]

Çokluk, Zeynep (2021) Manipulating and visualizing the energy metabolism in single cells using chemogenetic tools and genetically encoded biosensors. [Thesis]

Ekmen, Erhan (2021) Discovery of amino acid compositions and motifs responsible for topological transitions in protein complexes. [Thesis]

Ghanem, Saleh Bader Saleh (2021) Determining which octopamine receptor links appetite and fluctuating trehalose levels in the honey bee. [Thesis]

Güçlü, Tandaç Fürkan (2021) Molecular level understanding of the functionality of PDZ3 variants via advanced all-atom simulations and dynamic residue network analyses. [Thesis]

İnan, Asuman (2021) In silico analysis of the food allergy-related pathways and the potential role of dietary mirnas. [Thesis]

Kesim, Hale (2021) Investigation of molecular mechanisms of lipid droplets catabolic pathways and their interactions in ichthyosis disease. [Thesis]

Muslu Ufuk, Tuğdem (2021) Plant noncoding RNAS and comparative analysis of insect tolerance loci. [Thesis]

Pamukcu, Cevriye (2021) Development of a pseudovirus-based assay for analysis of neutralizing activity against SARS-CoV-2. [Thesis]

Parlar, Ayhan (2021) Characterization of structural and functional properties of anti-VEGF-IgG molecules under certain environmental stress conditions. [Thesis]

Sarıkaya, Sinem (2021) Investigation of links and crosstalk between autophagy and DNA damage responses. [Thesis]

Sevimli, Gülşah (2021) How much iron is good? Revisiting the role of ferrous iron supplementation in cultured cells using genetically encoded NO biosensors. [Thesis]

Şengül, Esra (2021) Understanding cancer and immune cell heterogeneity using microfluidics, dielectrophoresis, and conventional methods. [Thesis]