Items where Division is "Biological Sciences & Bio Eng." and Year is 2014

Article

Açıksöz Özden, Seher Bahar and Öztürk, Levent and Yazıcı, Mustafa Atilla and Çakmak, İsmail (2014) Inclusion of urea in a (59)FeEDTA solution stimulated leaf penetration and translocation of Fe-59 within wheat plants. Physiologia Plantarum (SI), 151 (3). pp. 348-357. ISSN 0031-9317 (Print) 1399-3054 (Online)

Bakır-Güngör, Burcu and Egemen, Ece and Sezerman, Uğur (2014) PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data. Bioinformatics, 30 (9). pp. 1287-1289. ISSN 1367-4803 (Print) 1460-2059 (Online)

Bakır-Güngör, Burcu and Remmers, Elaine F. and Meguro, Akira and Mizuki, Nobuhisa and Kastner, Daniel L. and Gül, Ahmet and Sezerman, Uğur (2014) Identification of possible pathogenic pathways in Behçet's disease using genome-wide association study data from two different populations. European Journal of Human Genetics . ISSN 1018-4813 (Print) 1476-5438 (Online)

Bakır-Güngör, Burcu and Remmers, Elaine F. and Meguro, Akira and Mizuki, Nobuhisa and Kastner, Daniel L. and Gül, Ahmet and Sezerman, Uğur (2014) Reply to stoimenis et al. (Accepted)

Budak, Hikmet and Khan, Zaeema and Kantar, Melda (2014) History and current status of wheat miRNAs using next-generation sequencing and their roles in development and stress. Briefings in Functional Genomics (Sl) . ISSN 2041-2649 (Print) 2041-2657 (Online)

Budak, Hikmet and Yüce, Meral (2014) Dispersion quality of amine functionalized multiwall carbon nanotubes plays critical roles in PCR enhancement. Journal of Nanoparticle Research . ISSN 1388-0764 (Print) 1572-896X (Online) Published Online First http://dx.doi.org/10.1007/s11051-014-2768-5

Chouhan, Raghuraj Singh and Qureshi, Anjum and Kolkar Mohammed, Javed Hussain Niazi (2014) Quantum dot conjugated S. cerevisiae as smart nanotoxicity indicators for screening the toxicity of nanomaterials. Journal of Materials Chemistry B, 2 (23). pp. 3618-3625. ISSN 2050-750X (Print) 2050-7518 (Online)

Çetiner, Selim (2014) "Üçyüz yıllık gecikme" sancıları. Tarla Sera Dergisi, 45 . pp. 18-20. ISSN 1309-9116

Çetiner, Selim (2014) Bulaşma nedir? Ne değildir? Tarla Sera Dergisi, 4 (52). pp. 18-20. ISSN 1309-9116

Çetiner, Selim (2014) Danıştay'ın GDO kararı ne anlama geliyor? Tarla Sera Dergisi (42). pp. 18-20. ISSN 1309-9116

Çetiner, Selim (2014) GDO araştırmaları çok uluslu şirketlerin tekelinde mi? Tarla Sera Dergisi (49). pp. 18-20. ISSN 1309-9116

Çetiner, Selim (2014) GDO güvenliği hala yeterince araştırılmadı mı? Tarla Sera Dergisi (48). pp. 18-20. ISSN 1309-9116

Çetiner, Selim (2014) GDO güvenliği konusunda bilimsel görüş birliği yok mu? Tarla Sera Dergisi (50). pp. 18-20. ISSN 1309-9116

Çetiner, Selim (2014) GDO karşıtlığının ağır bedelli faydaları. Tarla Sera Dergisi (47). pp. 2-4. ISSN 1309-9116

Çetiner, Selim (2014) GDO üretmenin hiç yararı yok mu? Tarla Sera Dergisi (51). pp. 18-20. ISSN 1309-9116

Çetiner, Selim (2014) GDO yetiştiren bunca üreticide hiç akıl yok mu? Tarla Sera Dergisi, 43 . pp. 18-20. ISSN 1309-9116

Çetiner, Selim (2014) Paralel bilim ve GDO. Tarla Sera Dergisi (44). pp. 18-20. ISSN 1309-9116

Çetiner, Selim (2014) Yönetmelik değişikliği ne değiştirdi? Tarla Sera Dergisi (46). pp. 20-22. ISSN 1309-9116

Çıkım, Taha Abdullah and Gözüaçık, Devrim and Koşar, Ali (2014) Power reclamation efficiency of a miniature energy-harvesting device using external fluid flows. lnternational Journal of Energy Research, 38 (10). pp. 1318-1330. ISSN 0363-907X (Print) 1099-114X (Online)

Çokol, Murat and Weinstein, Zohar Bat-El and Yılancıoğlu, Kaan and Tasan, Murat and Doak, Allison and Cansever, Dilay and Mutlu, Beste and Li, Siyang and Rodriguez-Esteban, Raul and Akhmedov, Murodzhon and Güvenek, Ayşegül and Çokol Çakmak, Melike and Çetiner, Selim and Giaever, Guri and Iossifov, Ivan and Nislow, Corey and Shoichet, Brian and Roth, Frederick P. (2014) Large-scale identification and analysis of suppressive drug interactions. Chemistry and Biology, 21 (4). pp. 541-551. ISSN 1074-5521 (Print) 1879-1301 (Online)

Gordon, Sean P. and Priest, Henry and Marais, David L. Des and Schackwitz, Wendy and Figueroa, Melania and Martin, Joel and Bragg, Jennifer N. and Tyler, Ludmila and Lee, Cheng-Ruei and Bryant, Doug and Wang, Wenqin and Messing, Joachim and Manzaneda, Antonio J. and Barry, Kerrie and Garvin, David F. and Budak, Hikmet and Tuna, Metin and Mitchell-Olds, Thomas and Pfender, William F. and Juenger, Thomas E. and Mockler, Todd C. and Vogel, John (2014) Genome diversity in brachypodium distachyon: deep sequencing of highly diverse inbred lines. Plant Journal, 79 (3). pp. 361-374. ISSN 0960-7412 (Print) 1365-313X (Online)

Gözüaçık, Devrim and Yağcı-Acar, Havva Funda and Akkoç, Yunus and Koşar, Ali and Doğan-Ekici, Işın and Ekici, Sinan (2014) Anticancer use of nanoparticles as nucleic acid carriers. Journal of Biomedical Nanotechnology (SI), 10 (9). pp. 1751-1783. ISSN 1550-7033 (Print) 1550-7041 (Online)

Gün, Gökhan and Yürüm, Yuda and Dinler Doğanay, Gizem (2014) Revisit to the biodesulfurization capability of hyperthermophilic archeon Sulfolobus Solfataricus P2 revealed DBT consumption by the organism in an oil/water two-phase liquid system at high temperatures. (Accepted)

Karabulut, Nermin Pinar and Akhmedov, Murodzhon and Çokol, Murat (2014) A drug similarity network for understanding drug mechanism of action. Journal of Bioinformatics and Computational Biology, 12 (2). ISSN 0219-7200 (Print) 1757-6334 (Online)

Karakaş, Hacer Ezgi and Gözüaçık, Devrim (2014) Autophagy and cancer. Turkish Journal of Biology, 38 (6). pp. 720-739. ISSN 1300-0152 (Print) 1303-6092 (Online)

Kurtoğlu, Evrim and Kaya, Alihan and Gözüaçık, Devrim and Acar, Funda Yağcı and Koşar, Ali (2014) Experimental study on convective heat transfer performance of iron oxide based ferrofluids in microtubes. Journal of Thermal Science and Engineering Applications, 6 (3). ISSN 1948-5085 (Print) 1948-5093 (Online)

Lucas, Stuart J. and Akpınar, Bala Anı and Simkova, Hana and Kubalakova, Marie and Dolezel, Jaroslav and Budak, Hikmet (2014) Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications. BMC Genomics, 15 . ISSN 1471-2164

Lucas, Stuart J. and Baştaş, Kubilay and Budak, Hikmet (2014) Exploring the interaction between small RNAs and R genes during Brachypodium response to Fusarium culmorum infection. Gene, 536 (2). pp. 254-264. ISSN 0378-1119 (Print) 1879-0038 (Online)

Marcussen, Thomas and Sandve, Simen R. and Heier, Lise and Spannagl, Manuel and Pfeifer, Matthias and Jakobsen, Kjetill S. and Wulff, Brande B. H. and Steuernagel, Burkhard and Mayer, Klaus F. X. and Olsen, Odd-Arne and Budak, Hikmet and Group Author(s), Int Wheat Genome Sequencing (2014) Ancient hybridizations among the ancestral genomes of bread wheat. Science (SI), 345 (6194). ISSN 0036-8075 (Print) 1095-9203 (Online)

Mayer, Klaus F. X. and Budak, Hikmet (2014) A chromosome-based draft sequence of the hexaploid bread wheat (triticum aestivum) genome. Science (SI), 345 (6194). ISSN 0036-8075 (Print) 1095-9203 (Online)

Öz, Tuğçe and Güvenek, Ayşegül and Yıldız, Sadık and Karaboğa, Enes and Tamer, Yusuf Talha and Mumcuyan, Nirva and Ozan, Vedat Burak and Şentürk, Gizem Hazal and Çokol, Murat and Yeh, Pamela and Toprak, Erdal (2014) Strength of selection pressure is an important parameter contributing to the complexity of antibiotic resistance evolution. Molecular Biology and Evolution, 31 (9). pp. 2387-2401. ISSN 0737-4038 (Print) 1537-1719 (Online)

Pfeifer, Matthias and Kugler, Karl G. and Sandve, Simen R. and Zhan, Bujie and Rudi, Heidi and Hvidsten, Torgeir R. and Mayer, Klaus F. X. and Olsen, Odd-Arne and Budak, Hikmet and Group Author(s), Int Wheat Genome Sequencing (2014) Genome interplay in the grain transcriptome of hexaploid bread wheat. Science (SI), 345 (6194). ISSN 0036-8075 (Print) 1095-9203 (Online)

Tada, Seiichi and Durmaz Timuçin, Emel and Kitajima, Takashi and Sezerman, Uğur and Ito, Yoshihiro (2014) Direct in vitro selection of titanium-binding epidermal growth factor. Biomaterials, 35 (11). pp. 3497-3503. ISSN 0142-9612 (Print) 1878-5905 (Online)

Tekdal, Dilek and Çetiner, Selim (2014) Efficient embryogenic callus from filaments with anther in thermopsis turcica. Turkish Journal of Agricultural and Natural Sciences (SI), 1 . pp. 1242-1246. ISSN 2148-3647

Tekdal, Dilek and Çetiner, Selim (2014) In vitro plant regeneration derived from leaf and stem explants of endemic Thermopsis turcica. Biologia, 69 (7). pp. 863-869. ISSN 0006-3088 (Print) 1336-9563 (Online)

Tekdal, Dilek and Çetiner, Selim (2014) In-ovule embryo culture of thermopsis turcica. Journal of Animal and Plant Sciences, 24 (6). pp. 1673-1679. ISSN 1018-7081

Tekdal, Dilek and Çetiner, Selim (2014) In-vitro koşullarda kültüre alınan Türkiye endemiği Thermopsis turcica Kit Tan, Vural & Küçüködük (Fabaceae) bitkisinin mineral element içeriğinin tespiti. Bağbahçe Bilim Dergisi, 1 (1). pp. 35-43. ISSN 2148-4015

Tekdal, Dilek and Çetiner, Selim (2014) The determination of self-compatibility status of thermopsis turcica through histological analysis. Journal of Applied Biological Sciences, 8 (1). pp. 64-67. ISSN 1307-1130 (Print) 2146 - 0108 (Online)

Tezil, Tuğsan and Başağa, Hüveyda (2014) Modulation of cell death in age related diseases. Current Pharmaceutical Design, 20 (18). pp. 3052-3067. ISSN 1381-6128 (Print) 1873-4286 (Online)

Velu, G. and Ortiz-Monasterio, I. and Çakmak, İsmail and Hao, Y. and Singh, R. P. (2014) Biofortification strategies to increase grain zinc and iron concentrations in wheat. Journal of Cereal Science, 59 (3). pp. 365-372. ISSN 0733-5210 (Print) 1095-9963 (Online)

Vestergaard, Bente and Sayers, Zehra (2014) Investigating increasingly complex macromolecular systems with small-angle X-ray scattering. International Union of Crystallography Journal (IUCrJ), 1 (6). pp. 523-529. ISSN 2052-2525

Vuruşaner, Beyza and Gamba, Paola and Testa, Gabriella and Gargiulo, Simona and Biasi, Fiorella and Zerbinati, Chiara and Iuliano, Luigi and Leonarduzzi, Gabriella and Başağa, Hüveyda and Poli, Giuseppe (2014) Survival signaling elicited by 27-hydroxycholesterol through the combined modulation of cellular redox state and ERK/Akt phosphorylation. Free Radical Biology and Medicine, 77 . pp. 376-385. ISSN 0891-5849 (Print) 1873-4596 (Online)

Yavuz, Ahmet Sinan and Sezerman, Uğur (2014) Predicting sumoylation sites using support vector machines based on various sequence features, conformational flexibility and disorder. BMC Genomics, 15 (Supple). ISSN 1471-2164 (Print) 1471-2164 (Online)

Yılancıoğlu, Kaan and Çokol, Murat and Pastırmacı, İnanç and Erman, Batu and Çetiner, Selim (2014) Oxidative stress is a mediator for increased lipid accumulation in a newly isolated Dunaliella salina strain. PLoS One, 9 (3). ISSN 1932-6203 (Print) 1932-6203 (Online)

Yılancıoğlu, Kaan and Weinstein, Zohar Bat-El and Meydan, Cem and Akhmetov, Azat and Toprak, Işıl and Durmaz, Arda and Iossifov, Ivan and Kazan, Hilal and Roth, Frederick P. and Çokol, Murat (2014) Target-independent prediction of drug synergies using only drug lipophilicity. Journal of Chemical Information and Modeling, 54 (8). pp. 2286-2293. ISSN 1549-9596 (Print) 1549-960X (Online)

Yıldız Kutman, Bahar and Kutman, Ümit Barış and Çakmak, İsmail (2014) Effects of seed nickel reserves or externally supplied nickel on the growth, nitrogen metabolites and nitrogen use efficiency of urea- or nitrate-fed soybean. Plant and Soil, 376 (1-2). pp. 261-276. ISSN 0032-079X (Print) 1573-5036 (Online)

Yucebilgili, Kuaybe and Kantar, Melda and Budak, Hikmet (2014) New wheat microRNA using whole-genome sequence. Functional and Integrative Genomics, 14 (2). pp. 363-379. ISSN 1438-793X (Print) 1438-7948 (Online)

Yüce, Meral and Budak, Hikmet (2014) Dispersion quality of amine functionalized multiwall carbon nanotubes plays critical roles in polymerase chain reaction enhancement. Journal of Nanoparticle Research, 16 (12). ISSN 1388-0764 (Print) 1572-896X (Online)

Yüce, Meral and Kurt, Hasan and Budak, Hikmet (2014) Characterization of a dual biotin tag for improved single stranded dna production. Analytical Methods, 6 (2). pp. 548-557. ISSN 1759-9660 (Print) 1759-9679 (Online)

Yüce, Meral and Kurt, Hasan and Mokkapati, Raghu Sarma and Budak, Hikmet (2014) Employment of nanomaterials in polymerase chain reaction: insight into the impacts and putative operating mechanisms of nano-additives in PCR. RSC Advances, 4 (69). pp. 36800-36814. ISSN 2046-2069 (Print) 2046-2069 (Online)

Papers in Conference Proceedings

Çıkım, Taha Abdullah and Oral, Özlem and Acar, Havva Funda Yagci and Gözüaçık, Devrim and Koşar, Ali (2014) Effect of varying magnetic fields on targeted gene delivery of nucleic acid-based molecules. In: 4th Micro and Nano Flows Conference (MNF2014), London, UK

Durmaz Timuçin, Emel and Sezerman, Uğur (2014) Zinc induces self-assembly of bacterial thermoalkalophilic lipases: a strategy for thermostability. In: 28th Annual Symposium of the Protein-Society, San Diego, CA, USA

Ertek, Gürdal and Tokdil, Bengi and Günaydın, İbrahim (2014) Risk factors and identifiers for Alzheimer's disease: a data mining analysis. In: 14th Industrial Conference on Data Mining (ICDM 2014), St. Petersburg, Russia

Gordon, Sean and Priest, Henry D. and Des Marais, David L. and Schackwitz, Wendy and Figueroa, Melania and Martin, Joel and Bragg, Jennifer and Tyler, Ludmila and Lee, Cheng-Ruei and Bryant, Doug and Wang, Wenqin and Messing, Joachim and Manzaneda, Antonio and Barry, Kerrie W. and Garvin, David F. and Budak, Hikmet and Tuna, Metin and Mitchell-Olds, Thomas and Pfender, William F. and Jeunger, Thomas and Mockler, Todd C. and Vogel, John (2014) Genome diversity in brachypodium distachyon: deep sequencing of highly diverse inbred lines. In: XXII. Plant and Animal Genome Meeting, San Diego, CA

Kantar, Melda and Avşar, Bihter and Budak, Hikmet (2014) Introgression of drought related QTLs into elite cultivars. In: XXII. Plant and Animal Genome Meeting, San Diego, CA

Khalid, Zoya and Sezerman, Uğur (2014) Interpreting the prevalence of regulatory SNPs in cancers and protein-coding SNPs among non-cancer diseases using GWAS association studies. In: International Conference on Applied Informatics for Health and Life Sciences (AIHLS 2014), Kuşadası, Turkey

Oral, Özlem and Sarafi, Parisa and Yüce, Aysel and Dökmeci, Serap and Gözüaçık, Devrim (2014) Autophagy abnormalities in mutant cells isolated from Gaucher's lysosomal storage disease. In: FEBS Advanced Lecture Course 360° Lysosome: from Structure to Genomics, from Function to Disease, Kuşadası, Turkey

Öztürk, Levent and Kahraman, Kadriye and Yılmaz, Özlem (2014) Effects of varied magnesium supply on wheat grown under ambient and elevated carbon dioxide conditions. In: 2nd International Symposium on Magnesium, (Accepted)

Quarantini, Sandra and Köse, Hazal Büşra and Kaplan Türköz, Burcu and Aktürk, Anıl and Sayers, Zehra (2014) Structure-function studies of A. thaliana heterotrimeric G-protein subunits. In: 23rd Congress and General Assembly of the International Union of Crystallography, Montreal, Quebec, Canada

Quarantini, Sandra and Köse, Hazal Büşra and Sayers, Zehra (2014) Structural characterization of A. thaliana heterotrimeric g-proteins. In: 58th Annual Meeting of the Biophysical-Society, San Francisco, CA

Sayers, Zehra and Quarantini, Sandra and Köse, Hazal Büşra and Gür, Burak (2014) Structural features of the gamma subunit (AGG2) and specificity of A. thaliana heterotrimeric G-protein interactions. In: Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, Istanbul, Turkey

Uysal, Emre and Karagüzel, Umut and Budak, Erhan and Bakkal, Mustafa (2014) Investigating eccentricity effects in turn-milling operations. In: 6th CIRP International Conference on High Performance Cutting (HPC2014), Berkeley

Üzüşen, Doğan and Oral, Özlem and Ekici, Sinan and Ünel, Mustafa and Gözüaçık, Devrim and Koşar, Ali (2014) Assessment of probe-to-specimen distance effect in kidney stone treatment with hydrodynamic cavitation. In: 4th European Conference on Microfluidics (Microfluidics 2014), Limerick, Ireland

Yavuz, Ahmet Sinan and Sözer, Namık Berk and Sezerman, Uğur (2014) Amino acid preferences at neddylation sites. In: International Conference on Applied Informatics for Health and Life Sciences (AIHLS 2014), Kuşadası, Turkey

Yılmaz, Özlem and Kahraman, Kadriye and Öztürk, Levent (2014) Effects of magnesium supply on wheat (T. durum) grown under ambient and elevated carbon dioxide conditions. In: Mineral Improved Crop Production for Healthy Food and Feed, (Accepted)

Yücebilgili Kurtoğlu, Kuaybe and Kantar, Melda and Lucas, Stuart J. and Budak, Hikmet (2014) Dissecting microRNAs in wheat chromosome 5D using next generation sequencing data. In: XXII. Plant and Animal Genome Meeting, San Diego, CA

Book Section / Chapter

Sezer, Deniz and Roux, Benoit (2014) Markov state and diffusive stochastic models in electron spin resonance. In: Bowman, Gregory R. and Pande, Vijay S. and Noe, Frank, (eds.) An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation. Advances in Experimental Medicine and Biology (797). Springer Science+Business Media, Dordrecht, pp. 115-138. ISBN 978-94-007-7605-0 (Print) 978-94-007-7606-7 (Online)

Shamloo, Bahar and Erman, Batu (2014) Immune receptors and signal transduction: T and B cell receptors (Immun reseptorler ve sinyal iletimi: T ve B hucre reseptorleri). In: Abacıoğlu, Hakan and Öngen, Betigül and Badur, Selim, (eds.) Infection Pathogenesis and Immunity (Enfeksiyon Patogenezi ve Bağışıklık). Istanbul, Istanbul. (Accepted)

Volumes Edited / Special Issues

Mehta, Rajendra and Geçkil, Hikmet and Gözüaçık, Devrim (2014) Cancer: normal cells' reply to a deadly fate (Turkish Journal of Biology: Special Issue). [Volumes Edited / Special Issues]

Schjorring, Jan K. and Çakmak, İsmail (2014) Plant mineral nutrition for nutrient and food security. [Volumes Edited / Special Issues]

Thesis

Altınuşak, Tuğçe (2014) Catastrophic evolution of trimethoprim resistance. [Thesis]

Deniz, Emre (2014) The role of PATZ1 transcription factor in the DNA damage response. [Thesis]

Güvenek, Ayşegül (2014) A systematic study for evolution of bacterial drug resistance: phenotype to genotype. [Thesis]

Kahraman, Kadriye (2014) Effects of varied magnesium and potassium nutrition on wheat grown under ambient and elevated atmospheric carbon dioxide conditions. [Thesis]

Karaboğa, Enes (2014) S-Pyocins as potential antimicrobial agents for eradicating pseudomonas aeruginosa biofilms. [Thesis]

Keskin, Nazlı (2014) Identification of PATZ1 transcription factor as a novel interacting partner and regulator of the p53 tumor suppressor protein. [Thesis]

Köse, Hazal Büşra (2014) Expression and purification of arabidopsis thaliana heterotrimeric G protein alpha subunit (GPA1) using bacteria and yeast systems. [Thesis]

Mengütay, Melis (2014) Adequate magnesium nutrition mitigates adverse effects of heat and high light stress on maize and wheat. [Thesis]

Sırlı, Serkan (2014) Investigations on the n-linked glycosylation of the aspergillus niger lipase in pichia pastoris. [Thesis]

Soysal, Duygu (2014) The role of SIRT1 on the crosstalk of p65 and NFATS in U937 monocytes under hyperosmotic stress. [Thesis]

Tamer, Yusuf Talha (2014) Studying genetic and enzymatic constraints driving evolution of antibiotic resistance. [Thesis]

Yalçın, Gülperi (2014) Genome editing of the IL-7 receptor gene locus using talens. [Thesis]

Yılancıoğlu, Kaan (2014) Genetic, physiological and biotechnological assessment of microorganisms for renewable and sustainable energy resource production. [Thesis]

Yılmaz, Hazal (2014) Modifications on protein termini of bacillus thermocatenulatus lipase and their impacts on activity and stability. [Thesis]