Items where Subject is "QH506 Molecular biology"

Article

Abdizadeh, Haleh and Tamer, Yusuf Talha and Acar, Ömer and Toprak, Erdal and Atılgan, Ali Rana and Atılgan, Canan (2017) Increased substrate affinity in the escherichia coli L28R dihydrofolate reductase mutant causes trimethoprim resistance. Physical Chemistry Chemical Physics, 19 (18). pp. 11416-11428. ISSN 1463-9076 (Print) 1463-9084 (Online)

Akpınar, Bala Anı and Lucas, Stuart J. and Budak, Hikmet (2017) A large-scale chromosome-specific SNP discovery guideline. Functional and Integrative Genomics, 17 (1). pp. 97-105. ISSN 1438-793X (Print) 1438-7948 (Online)

Akpınar, Bala Anı and Lucas, Stuart J. and Budak, Hikmet (2013) Genomics approaches for crop improvement against abiotic stress. Scientific World Journal . ISSN 1537-744X

Akpınar, Bala Anı and Yüce, Meral and Lucas, Stuart J. and Vrana, Jan and Buresova, Veronika and Dolezel, Jaroslav and Budak, Hikmet (2015) Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides. Scientific Reports, 5 . ISSN 2045-2322

Aydınoğlu, Fatma and Lucas, Stuart J. (2019) Identification and expression profiles of putative leaf growth related microRNAs in maize (Zea mays L.) hybrid ADA313. Gene, 690 . pp. 57-67. ISSN 0378-1119 (Print) 1879-0038 (Online)

Bahar, Ivet and Erman, Burak and Jernigan, Robert L. and Atılgan, Ali Rana and Covell, David G. (1999) Collective motions in HIV-1 reverse transcriptase: examination of flexibility and enzyme function. Journal of Molecular Biology, 285 (3). pp. 1023-1037. ISSN 0022-2836

Baysal, Canan and Atılgan, Ali Rana (2001) Coordination topology and stability for the native and binding conformers of chymotrypsin inhibitor 2. Proteins: Structure, Function, and Bioinformatics, 45 (1). pp. 62-70. ISSN 0887-3585

Baysal, Canan and Atılgan, Ali Rana (2001) Elucidating the structural mechanisms for biological activity of the chemokine family. Proteins: Structure, Function, and Bioinformatics, 43 (2). pp. 150-160. ISSN 0887-3585

Choulet, Frederic and Wicker, Thomas and Rustenholz, Camille and Paux, Etienne and Salse, Jerome and Leroy, Philippe and Schlub, Stephane and Le Paslier, Marie-Christine and Magdelenat, Ghislaine and Gonthier, Catherine and Couloux, Arnaud and Budak, Hikmet and Breen, James and Pumphrey, Michael and Liu, Sixin and Kong, Xiuying and Jia, Jizeng and Gut, Marta and Brunel, Dominique and Anderson, James A. and Gill, Bikram S. and Appels, Rudi and Keller, Beat and Feuillet, Catherine (2010) Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell, 22 (6). pp. 1686-1701. ISSN 1040-4651

Dasgan, H. Yıldız and Aktaş, Hakan and Abak, Kazım and Çakmak, İsmail (2002) Determination of screening techniques to salinity tolerance in tomatoes and investigation of genotype responses. Plant Science, 163 (4). pp. 695-703. ISSN 0168-9452

Durmaz, Emel and Çoruh, Ceyda and Dinler, Gizem and Grusak, Micheal A. and Peleg, Zvika and Saranga, Yashua and Fahima, Tzion and Yazıcı, Mustafa Atilla and Öztürk, Levent and Çakmak, İsmail and Budak, Hikmet (2011) Expression and cellular localization of ZIP1 transporter under zinc deficiency in wild emmer wheat. Plant Molecular Biology Reporter, 29 (3). pp. 582-596. ISSN 0735-9640

Hussain, Babar and Lucas, Stuart J. and Budak, Hikmet (2018) CRISPR/Cas9 in plants: at play in the genome and at work for crop improvement. Briefings in Functional Genomics, 17 (5). pp. 319-328. ISSN 2041-2649 (Print) 2041-2657 (Online)

Kaçar, Y. A. and Biçen, B. and Varol, İ. and Mendi, Y. Y. and Serçe, S. and Çetiner, Selim (2010) Gelling agents and culture vessels affect in vitro multiplication of banana plantlets. Genetics and Molecular Research, 9 (1). pp. 416-424. ISSN 1676-5680

Kantar, Melda and Lucas, Stuart J. and Budak, Hikmet (2011) MiRNA expression patterns of triticum dicoccoides in response to shock drought stress. Planta, 233 (3). pp. 471-484. ISSN 0032-0935 (Print) 1432-2048 (Online)

Kolkar Mohammed, Javed Hussain Niazi and Sang, Byoung-In and Kim, Yeon Seok and Gu, Man Bock (2011) Global gene response in saccharomyces cerevisiae exposed to silver nanoparticles. Applied Biochemistry and Biotechnology, 164 (8). pp. 1278-1291. ISSN 0273-2289 (Print) 1559-0291 (Online)

Kütük, Özgür and Başağa, Hüveyda (2003) Aspirin prevents apoptosis and NF-kappa B activation induced by H2O2 in HeLa cells. Free Radical Research, 37 (12). pp. 1267-1276. ISSN 1071-5762

Lucas, Stuart J. and Akpınar, Bala Anı and Kantar, Melda and Weinstein, Zohar Bat-El and Aydınoğlu, Fatma and Safar, Jan and Simkova, Hana and Frenkel, Zeev and Korol, Abraham and Magni, Federica and Cattonaro, Federica and Vautrin, Sonia and Bellec, Arnaud and Berges, Helene and Dolezel, Jaroslav and Budak, Hikmet (2013) Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A. PLoS One, 8 (4). ISSN 1932-6203

Lucas, Stuart J. and Durmaz, Emel and Akpınar, Bala Anı and Budak, Hikmet (2011) The drought response displayed by a DRE-binding protein from Triticum dicoccoides. Plant Physiology and Biochemistry, 49 (3). pp. 346-351. ISSN 0981-9428

Lucas, Stuart J. and Salantur, Ayten and Yazar, Selami and Budak, Hikmet (2017) High-throughput SNP genotyping of modern and wild emmer wheat for yield and root morphology using a combined association and linkage analysis. Functional and Integrative Genomics . ISSN 1438-793X (Print) 1438-7948 (Online) Published Online First http://dx.doi.org/10.1007/s10142-017-0563-y

Lucas, Stuart J. and Simkova, Hana and Safar, Jan and Jurman, Irena and Cattonaro, Federica and Vautrin, Sonia and Bellec, Arnaud and Berges, Helene and Dolezel, Jaroslav and Budak, Hikmet (2012) Functional features of a single chromosome arm in wheat (1AL) determined from its structure. Functional and Integrative Genomics, 12 (1). pp. 173-182. ISSN 1438-793X (Print) 1438-7948 (Online)

Negre-Salvayre, Anne and Auge, Nathalie and Ayala, Victoria and Başağa, Hüveyda and Boada, Jordi and Brenke, Rainer and Chapple, Sarah and Cohen, Guy and Feher, Janos and Grune, Tilman and Lengyel, Gabriella and Mann, Giovanni E. and Pamplona, Reinald and Poli, Giuseppe and Portero-Otin, Manuel and Riahi, Yael and Salvayre, Robert and Sasson, Shlomo and Serrano, Jose and Shamni, Ofer and Siems, Werner and Siow, Richard C. M. and Wiswedel, Ingrid and Zarkovic, Kamelija and Zarkovic, Neven (2010) Pathological aspects of lipid peroxidation. Free Radical Research (Sp. Iss. SI), 44 (10). pp. 1125-1171. ISSN 1071-5762

Onat, D. and Boscoboinik, D. and Azzi, A. and Başağa, Hüveyda (1999) Effect of alpha-tocopherol and silibin dihemisuccinate on the proliferation of human skin fibroblasts. Biotechnology and Applied Biochemistry, 29 (part 3). pp. 213-215. ISSN 0885-4513 (Print) 1470-8744 (Electronic)

Sayers, Zehra and Brouillon, Patricia and Svergun, Dimitri I. and Zielenkiewicz, Piotr and Koch, Michel H. J. (1999) Biochemical and structural characterization of recombinant copper-metallothionein from Saccharomyces cerevisiae. European Journal of Biochemistry, 262 (3). pp. 858-865. ISSN 0014-2956

Seidl-Seiboth, Verena and Gruber, Sabine and Sezerman, Uğur and Schwecke, Torsten and Albayrak, Aydın and Neuhof, Torsten and von Doehren, Hans and Baker, Scott E. and Kubicek, Christian P. (2011) Novel hydrophobins from trichoderma define a new hydrophobin subclass: protein properties, evolution, regulation and processing. Journal of Molecular Evolution, 72 (4). pp. 339-351. ISSN 0022-2844

Sezer, Arzu and Dolar, F. Sara and Lucas, Stuart J. and Köse, Çiğdem and Gümüş, Ebru (2017) First report of the recently introduced, destructive powdery mildew Erysiphe corylacearum on hazelnut in Turkey. Phytoparasitica, 45 (4). pp. 577-581. ISSN 0334-2123 (Print) 1876-7184 (Online)

Tekdal, Dilek and Lucas, Stuart J. and Çetiner, Selim (2017) First report about the identification and preliminary analysis of a partial sequence of dihydropyrimidine dehydrogenase (NADP plus) in Thermopsis turcica during floral development using degenerate primers. Acta Physiologiae Plantarum, 39 (8). ISSN 0137-5881 (Print) 1861-1664 (Online)

Türkeç, Aydın and Lucas, Stuart J. and Karacanlı, Burçin and Baykut, Aykut and Yüksel, Hakkı (2016) Assessment of a direct hybridization microarray strategy for comprehensive monitoring of genetically modified organisms (GMOs). Food Chemistry, 194 . pp. 399-409. ISSN 0308-8146

Türkeç, Aydın and Lucas, Stuart J. and Karlık, Elif (2016) Monitoring the prevalence of genetically modified (GM) soybean in Turkish food and feed products. Food Control, 59 . pp. 766-772. ISSN 0956-7135

Türkeç, Aydın and Lucas, Stuart J. and Karlık, Elif (2016) Monitoring the prevalence of genetically modified maize in commercial animal feeds and food products in Turkey. Journal of the Science of Food and Agriculture, 96 (9). pp. 3173-3179. ISSN 0022-5142 (Print) 1097-0010 (Online)

Wicker, Thomas and Mayer, Klaus F. X. and Gundlach, Heidrun and Martis, Mihaela and Steuernagel, Burkhard and Scholz, Uwe and Simkova, Hana and Kubalakova, Marie and Choulet, Frederic and Taudien, Stefan and Platzer, Matthias and Feuillet, Catherine and Fahima, Tzion and Budak, Hikmet and Dolezel, Jaroslav and Keller, Beat and Stein, Nils (2011) Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell, 23 (5). pp. 1706-1718. ISSN 1040-4651

Yucebilgili, Kuaybe and Kantar, Melda and Lucas, Stuart J. and Budak, Hikmet (2013) Unique and conserved MicroRNAs in wheat chromosome 5D revealed by next-generation sequencing. PLoS One, 8 (7). ISSN 1932-6203

Papers in Conference Proceedings

Abdizadeh, Haleh and Atılgan, Ali Rana and Atılgan, Canan (2016) Computational modeling of iron binding and release in human serum transferrin. In: 41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Turkey

Abdizadeh, Haleh and Atılgan, Canan (2015) Mechanically hot spots correlate with cooperativity and function in human transferrin. In: 10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress, Dresden, Germany

Aksoy, S. and Hekimbaşı, T. and Eyidoğan, F. and Öktem, H. and Budak, Hikmet (2009) Application of fiber-fish methods for transgene analysis in transgenic plants. In: 7th European Cytogenetics Conference, Stockholm, Sweden

Kim, Junyoung and Karakaş Schüller, Hacer Ezgi and Choi, Yong-Jun and Gözüaçık, Devrim and Cho, Yoon-Kyoung (2015) Kinetic study of autophagy activation in fibroblasts interacted with single tumor cell in microfluidic platform. In: Annual Autumn Meeting of The Korean BioChip Society, Gangwon, S. Korea

Kim, Junyoung and Karakaş Schüller, Hacer Ezgi and Choi, Yongjun and Gözüaçık, Devrim and Cho, Yoon-Kyoung (2016) Monitoring single tumor interactions with fibroblasts in autophagy activation. In: 8th International Conference on Microtechnologies in Medicine and Biology (MMB), Seoul, S. Korea

Kim, Junyoung and Karakaş Schüller, Hacer Ezgi and Gözüaçık, Devrim and Cho, Yoon-Kyoung (2015) Single cell analysis on the role of TGF-β1 in autophagy of tumor cell-interacted stroma fibroblasts. In: 19th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2015), Gyeongju, South Korea

Korkut, Senay Vural and Altınışık, Başak Çelik and Sezerman, Uğur and Meydan, Cem (2011) Cloning of hordeum spontenaum genes which are expressed upon zinc deficiency using suppressed sub-stractive hybridization method. In: European Biotechnology Congress, Istanbul, Turkey

Book Section / Chapter

Lucas, Stuart J. (2018) The application of nucleic acid microarrays for the detection of genetically modified organisms. In: Mahgoub, Salah E. O. and Nollet, Leo M. L., (eds.) Testing and Analysis of GMO-Containing Foods and Feed. Food Analysis & Properties Series. CRC Press, Boca Raton, FL, USA, pp. 205-222. ISBN 9781138036383

Lucas, Stuart J. and Türkeç, Aydın and Karlık, Elif (2016) The future of GM foods or GM foods of the future: where is the biotech revolution heading? In: Bagchi, Debasis and Swaroop, Anand, (eds.) Food Toxicology. CRC Press, Boca Raton, FA, USA, pp. 519-537. ISBN 9781498708746