Items where Division is "Biological Sciences & Bio Eng." and Year is 2011

Article

Açıksöz, Seher Bahar and Öztürk, Levent and Gökmen, Özay Özgür and Roemheld, Volker and Çakmak, İsmail (2011) Effect of nitrogen on root release of phytosiderophores and root uptake of Fe(III)-phytosiderophore in Fe-deficient wheat plants. Physiologia Plantarum, 142 (3). pp. 287-296. ISSN 0031-9317

Açıksöz, Seher Bahar and Yazıcı, Mustafa Atilla and Öztürk, Levent and Çakmak, İsmail (2011) Biofortification of wheat with iron through soil and foliar application of nitrogen and iron fertilizers. Plant and Soil (SI), 349 (1-2). pp. 215-225. ISSN 0032-079X (print) ; 1573-5036 (online)

Apaydın, Serkan Mehmet and Çatay, Bülent and Patrick, Nicholas and Donald, Bruce R. (2011) NVR-BIP: nuclear vector replacement using binary integer programming for NMR structure-based assignments. The Computer Journal, 54 (5). pp. 708-716. ISSN 0010-4620

Aydın, Zafer and Altunbaşak, Yücel and Erdoğan, Hakan (2011) Bayesian models and algorithms for protein beta-sheet prediction. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8 (2). pp. 395-409. ISSN 1545-5963

Bakır-Güngör, Burcu and Sezerman, Uğur (2011) A new methodology to associate SNPs with human diseases according to their pathway related context. PLoS One, 6 (10). ISSN 1932-6203

Bayram Akçapınar, Günseli and Gül, Özgür and Sezerman, Uğur (2011) Effect of codon optimization on the expression of trichoderma reesei endoglucanase 1 in pichia pastoris. Biotechnology Progress, 27 (5). pp. 1257-1263. ISSN 8756-7938

Brkljacic, Jelena and Grotewold, Erich and Scholl, Randy and Mockler, Todd and Garvin, David F. and Vain, Philippe and Brutnell, Thomas and Sibout, Richard and Bevan, Michael and Budak, Hikmet and Caicedo, Ana L. and Gao, Caixia and Gu, Yong and Hazen, Samuel P. and Holt, Ben F. and Hong, Shin-Young and Jordan, Mark and Manzaneda, Antonio J. and Mitchell-Olds, Thomas and Mochida, Keiichi and Mur, Luis A. J. and Park, Chung-Mo and Sedbrook, John and Watt, Michelle and Zheng, Shao Jian and Vogel, John P. (2011) Brachypodium as a model for the grasses: today and the future. Plant Physiology, 157 (1). pp. 3-13. ISSN 0032-0889

Budak, Hikmet and Akpınar, Bala Anı (2011) Dehydration stress-responsive miRNA in brachypodium distachyon: evident by genome-wide screening of microRNAs expression. OMICS: A Journal of Integrative Biology, 15 (11). pp. 791-799. ISSN 1536-2310

Cooper, Julia and Sanderson, Roy and Çakmak, İsmail and Öztürk, Levent and Shotton, Peter and Carmichael, Andrew and Haghighi, Reza Sadrabadi and Tetard-Jones, Catherine and Volakakis, Nikos and Eyre, Mick and Leifert, Carlo (2011) Effect of organic and conventional crop rotation, fertilization, and crop protection practices on metal contents in wheat (triticum aestivum). Journal of Agricultural and Food Chemistry, 59 (9). pp. 4715-4724. ISSN 0021-8561

Çetiner, Selim (2011) Biyogüvenlik nedir? ne değildir? Tarla Sera Dergisi . pp. 88-91. ISSN 1309-9116

Çetiner, Selim (2011) Bizde ziraat eğitimi. Tarla Sera Dergisi . pp. 52-54. ISSN 1309-9116

Çetiner, Selim (2011) Fruktoz nedir? ne değildir? Tarla Sera Dergisi . pp. 14-17. ISSN 1309-9116

Çetiner, Selim (2011) Hocaların kafası neden karışık? Tarla Sera Dergisi . pp. 14-16. ISSN 1309-9116

Çetiner, Selim (2011) Organiği kimler yiyor? Tarla Sera Dergisi . pp. 14-17. ISSN 1309-9116

Çetiner, Selim (2011) Organik nedir? ne değildir? Tarla Sera Dergisi . pp. 14-16. ISSN 1309-9116

Çetiner, Selim (2011) Organik tarım dünyayı besleyebilir mi? Tarla Sera Dergisi . pp. 64-67. ISSN 1309-9116

Çetiner, Selim (2011) Organik tarım nedir? ne değildir? Yemek ve Kültür, 25 . pp. 110-115. ISSN 1305-2780

Çetiner, Selim (2011) Organik ürünler daha güvenli, daha sağlıklı mı? Tarla Sera Dergisi . pp. 66-69. ISSN 1309-9116

Çetiner, Selim (2011) Organik ürünler daha lezzetli, daha besleyici mi? Tarla Sera Dergisi . pp. 18-21. ISSN 1309-9116

Çetiner, Selim (2011) Organik ürünler doğal mı? değil mi? Tarla Sera Dergisi . pp. 100-102. ISSN 1309-9116

Çetiner, Selim (2011) Yeşil ekonomi, sürdürülebilir Kalkınma vs... Tarla Sera Dergisi . pp. 80-82. ISSN 1309-9116

Çobanoğlu, Murat Can and Saygın, Yücel and Sezerman, Uğur (2011) Classification of GPCRs using family specific motifs. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8 (6). pp. 1495-1508. ISSN 1545-5963

Çokol, Murat and Chua, Hon Nian and Taşan, Murat and Mutlu, Beste and Weinstein, Zohar Bat-El and Suzuki, Yo and Nergiz, Mehmet E. and Costanzo, Michael and Baryshnikova, Anastasia and Giaever, Guri and Nislow, Corey and Myers, Chad L. and Andrews, Brenda J. and Boone, Charles and Roth, Frederick P. (2011) Systematic exploration of synergistic drug pairs. Molecular Systems Biology, 7 . ISSN 1744-4292

Durmaz, Emel and Çoruh, Ceyda and Dinler, Gizem and Grusak, Micheal A. and Peleg, Zvika and Saranga, Yashua and Fahima, Tzion and Yazıcı, Mustafa Atilla and Öztürk, Levent and Çakmak, İsmail and Budak, Hikmet (2011) Expression and cellular localization of ZIP1 transporter under zinc deficiency in wild emmer wheat. Plant Molecular Biology Reporter, 29 (3). pp. 582-596. ISSN 0735-9640

Erenoğlu, Emin Bülent and Kutman, Barış Ümit and Ceylan, Yasemin and Yıldız, Bahar and Çakmak, İsmail (2011) Improved nitrogen nutrition enhances root uptake, root-to-shoot translocation and remobilization of zinc (65Zn) in wheat. New Phytologist, 189 (2). pp. 438-448. ISSN 0028-646X

Kabaha, Khaled and Taralp, Alpay and Çakmak, İsmail and Öztürk, Levent (2011) Accelerated hydrolysis method to estimate the amino acid content of wheat (Triticum durum Desf.) flour using microwave irradiation. Journal of Agricultural and Food Chemistry (Sp. Iss. SI), 59 (7). pp. 2958-2965. ISSN 0021-8561

Kantar, Melda and Lucas, Stuart J. and Budak, Hikmet (2011) Drought stress: molecular genetics and genomics approaches. Advances in Botanical Research, 57 . pp. 445-493. ISSN 0065-2296

Kantar, Melda and Lucas, Stuart J. and Budak, Hikmet (2011) MiRNA expression patterns of triticum dicoccoides in response to shock drought stress. Planta, 233 (3). pp. 471-484. ISSN 0032-0935 (Print) 1432-2048 (Online)

Koşar, Ali and Şeşen, Muhsincan and Oral, Özlem and İtah, Zeynep and Gözüaçık, Devrim (2011) Bubbly cavitating flow generation and investigation of its erosional nature for biomedical applications. IEEE Transactions on Biomedical Engineering, 58 (5). pp. 1337-1346. ISSN 0018-9294

Kutman, Barış Ümit and Yıldız, Bahar and Çakmak, İsmail (2011) Effect of nitrogen on uptake, remobilization and partitioning of zinc and iron throughout the development of durum wheat. Plant and Soil, 342 (1-2). pp. 149-164. ISSN 0032-079X (Print) 1573-5036 (Online)

Kutman, Barış Ümit and Yıldız, Bahar and Çakmak, İsmail (2011) Improved nitrogen status enhances zinc and iron concentrations both in the whole grain and the endosperm fraction of wheat. Journal of Cereal Science, 53 (1). pp. 118-125. ISSN 0733-5210

Levi, Avishag and Paterson, Andrew H. and Çakmak, İsmail and Saranga, Yehoshua (2011) Metabolite and mineral analyses of cotton near-isogenic lines introgressed with QTLs for productivity and drought-related traits. Physiologia Plantarum, 141 (3). pp. 265-275. ISSN 0031-9317

Lucas, Stuart J. and Doğan, Esen and Budak, Hikmet (2011) TMPIT1 from wild emmer wheat: first characterisation of a stress-inducible integral membrane protein. Gene, 483 (1-2). pp. 22-28. ISSN 0378-1119

Lucas, Stuart J. and Durmaz, Emel and Akpınar, Bala Anı and Budak, Hikmet (2011) The drought response displayed by a DRE-binding protein from Triticum dicoccoides. Plant Physiology and Biochemistry, 49 (3). pp. 346-351. ISSN 0981-9428

Mahmoud, Amer Faiz Ahmed and Budak, Hikmet (2011) First report of charcoal rot caused by macrophomina phaseolina in sunflower in Turkey. Plant Disease, 95 (2). p. 223. ISSN 0191-2917

Öz Arslan, Devrim and Korkmaz, Gözde and Gözüaçık, Devrim (2011) Autophagy: a cellular stres and a cell death mechanism (Otofaji: bir hücresel stres yanıtı ve ölüm mekanizması). Acıbadem Üniversitesi Sağlık Bilimleri Dergisi, 2 (4). pp. 184-194. ISSN 1309-470X

Prom-u-thai, C. and Huang, L. and Çakmak, İsmail and Rerkasem, B. (2011) Simultaneous fortification of iron and zinc in parboiled rice kernel. ScienceAsia, 37 (4). pp. 296-302. ISSN 1513-1874

Seidl-Seiboth, Verena and Gruber, Sabine and Sezerman, Uğur and Schwecke, Torsten and Albayrak, Aydın and Neuhof, Torsten and von Doehren, Hans and Baker, Scott E. and Kubicek, Christian P. (2011) Novel hydrophobins from trichoderma define a new hydrophobin subclass: protein properties, evolution, regulation and processing. Journal of Molecular Evolution, 72 (4). pp. 339-351. ISSN 0022-2844

Sezer, Deniz and Sigurdsson, Snorri Th. (2011) Simulating electron spin resonance spectra of macromolecules labeled with two dipolar-coupled nitroxide spin labels from trajectories. Physical Chemistry Chemical Physics, 13 (28). pp. 12785-12797. ISSN 1463-9076

Sogut, İbrahim and Hatipoğlu, İbrahim and Serhatlı, Müge and Çevik, Şafak Işıl and Durali, Deniz and Başalp, Aynur (2011) Cryopreservation of spleen and lymph nodes as a source of mononuclear cells to be used for the development of monoclonal antibody producing hybridoma cells. Cryoletters, 32 (3). pp. 266-274. ISSN 0143-2044

Tiber, Pınar and Orun, Oya and Nacar, Cevdet and Sezerman, Uğur and Severcan, Feride and Severcan, Mete and Matagne, André and Kan, Beki (2011) Structural characterization of recombinant bovine Go alpha by spectroscopy and homology modeling. Spectroscopy, 26 (4-5). pp. 213-229. ISSN 0712-4813

Toprak, Erdal (2011) Evolutionary paths to strong antibiotic resistance under dynamically sustained drug stress. (Accepted)

Wicker, Thomas and Mayer, Klaus F. X. and Gundlach, Heidrun and Martis, Mihaela and Steuernagel, Burkhard and Scholz, Uwe and Simkova, Hana and Kubalakova, Marie and Choulet, Frederic and Taudien, Stefan and Platzer, Matthias and Feuillet, Catherine and Fahima, Tzion and Budak, Hikmet and Dolezel, Jaroslav and Keller, Beat and Stein, Nils (2011) Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell, 23 (5). pp. 1706-1718. ISSN 1040-4651

Papers in Conference Proceedings

Durası, İlknur Melis and Dağ, Uğur and Güngör, Burcu Bakır and Erdoğan, Burcu and Kurnaz, Işıl Aksan and Sezerman, Uğur (2011) Identification of transcription factor binding sites in promoter databases. In: 6th International Symposium on Health Informatics and Bioinformatics, (HIBIT 2011), Izmir, Turkey

Erdoğan, Halit and Apaydın, Mehmet Serkan (2011) Incorporating hadamac experiment into NMR structure-based assignments. In: 6th International Symposium on Health Informatics and Bioinformatics (HIBIT), Izmir, Turkey

Gözüaçık, Devrim (2011) Autophagy, cell death and disease. In: 4th International Congress of Molecular Medicine, Istanbul, Turkey

Korkut, Senay Vural and Altınışık, Başak Çelik and Sezerman, Uğur and Meydan, Cem (2011) Cloning of hordeum spontenaum genes which are expressed upon zinc deficiency using suppressed sub-stractive hybridization method. In: European Biotechnology Congress, Istanbul, Turkey

Meydan, Cem and Sezerman, Uğur (2011) Short-term HIV therapy response prediction using sequence information. In: 6th International Symposium on Health Informatics and Bioinformatics, (HIBIT 2011), Izmir, Turkey

Book Section / Chapter

Broadley, Martin and Brown, Patrick and Çakmak, İsmail and Ma, Jian Feng and Rengel, Zed and Zhao, Fangjie (2011) Beneficial elements. In: Marschner, Petra, (ed.) Marschner's Mineral Nutrition of Higher Plants. Academic Press, pp. 249-268. ISBN 0123849055 ; 9780123849052

Broadley, Martin and Brown, Patrick and Çakmak, İsmail and Rengel, Zed and Zhao, Fangjie (2011) Function of nutrients: micronutrients. In: Marschner, Petra, (ed.) Marschner's Mineral Nutrition of Higher Plants. Academic Press, pp. 191-248. ISBN 0123849055 ; 9780123849052

Çakmak, İsmail (2011) Breeding, transformation and physiological strategies for the development ofwheat with high zinc and iron grain concentration. In: Bonjean, Alain, (ed.) The World Wheat Book. Lavoisier, France. ISBN 978-2-7430-1102-4 (Accepted)

Gözüaçık, Devrim (2011) Otofaji analiz yöntemleri ve uygulama aşamaları (Autophagy analysis techniques and applications). In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) Hücre Ölümü Araştırma Teknikleri. Dokuz Eylul University Press, Izmir, pp. 129-141. ISBN 978-975-441-349-6

Gözüaçık, Devrim (2011) Otofaji ve sinyal yolakları (Autophagy and signaling pathways). In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) Hücre Ölümü Araştırma Teknikleri. Dokuz Eylul University Press, Izmir, pp. 53-61. ISBN 978-975-441-349-6

Küçükural, Alper and Szilagyi, Andras and Sezerman, Uğur and Zhang, Yang (2011) Protein homology analysis for function prediction with parallel sub-graph isomorphism. In: Lodhi, Huma and Yamanashi, Yoshihiro, (eds.) Chemoinformatics and Advanced Machine Learning Perspectives: Complex Computational Methods and Collaborative Techniques. IGI Global, Hershey, PA, USA, pp. 129-144. ISBN 9781615209118 ; 1615209115

Thesis

Albayrak, Aydın (2011) Classification of proteins using sequential and structural features. [Thesis]

Altıntaş, Gamze (2011) Characterization of zinc uptake, translocation and remobilization in hydroponically grown triticum turgidum L. subsp. durum desf. and triticum turgidum L. subsp. dicoccoides genotypes. [Thesis]

Aydın, Mert (2011) Biochemical and biophysical characterization of mutant T. durum metallothionein. [Thesis]

Bayram Akçapınar, Günseli (2011) Protein engineering and covalent modification of trichoderma reesei cellulases in pichia pastoris for textile biofinishing. [Thesis]

Kısakürek, Ali Fuat (2011) 2-Deoxyglucose pretreatment sensitizes colon cancer cells to cisplatin and killer trail induced apoptosis by Mcl-1 downregulation. [Thesis]

Ükelgi, Nurten (2011) Isolation, identification and characterization of wine yeast species from grapes of three different vineyards in Turkey. [Thesis]

Ün, Manolya (2011) The role of BTB/zinc finger transcription factor Patz1/MAZR in the regulation of p53-mediated DNA damage response during T cell development. [Thesis]