Items where Author is "Atılgan, Canan"

Article

Kantarcıoğlu Mazmanoğlu, Işık and Gaszek, Ilona K. and Güçlü, Tandaç Fürkan and Yildiz, M. Sadik and Atılgan, Ali Rana and Toprak, Erdal and Atılgan, Canan (2024) Structural shifts in TolC facilitate efflux-mediated β-lactam resistance. Communications Biology, 7 (1). ISSN 2399-3642

Berksöz, Melike and Atılgan, Canan (2024) Allosteric modulation of fluorescence revealed by hydrogen bond dynamics in a genetically encoded maltose biosensor. Proteins: Structure, Function and Bioinformatics, 92 (8). pp. 923-932. ISSN 0887-3585 (Print) 1097-0134 (Online)

Güçlü, Tandaç Fürkan and Atılgan, Ali Rana and Atılgan, Canan (2024) Deciphering GB1's single mutational landscape: insights from MuMi analysis. Journal of Physical Chemistry B . ISSN 1520-6106 (Print) 1520-5207 (Online) Published Online First https://dx.doi.org/10.1021/acs.jpcb.4c04916

Çetin, Ebru and Güçlü, Tandaç Fürkan and Kantarcıoğlu, Işık and Gaszek, Ilona K. and Toprak, Erdal and Atılgan, Ali Rana and Dedeoglu, Burcu and Atılgan, Canan (2023) Kinetic barrier to enzyme inhibition is manipulated by dynamical local interactions in E. coli DHFR. Journal of Chemical Information and Modeling, 63 (15). pp. 4839-4849. ISSN 1549-9596 (Print) 1549-960X (Online)

Alhamwi, Almotasem Belah and Atılgan, Canan and Sensoy, Ozge (2023) Nonlocal effects of antibiotic-resistance-causing mutations reveal an alternative region for targeting on FtsW-penicillin-binding protein 3 complex of haemophilus influenzae. Journal of Chemical Information and Modeling, 63 (10). pp. 3094-3104. ISSN 1549-9596 (Print) 1549-960X (Online)

Liu, Gökşin and Ekmen, Erhan and Jalalypour, Farzaneh and Mertens, Haydyn D. T. and Jeffries, Cy M. and Svergun, Dmitri and Atılgan, Ali Rana and Atılgan, Canan and Sayers, Zehra (2023) Conformational multiplicity of bacterial ferric binding protein revealed by small angle x-ray scattering and molecular dynamics calculations. Journal of Chemical Physics, 158 (8). ISSN 0021-9606 (Print) 1089-7690 (Online)

Çetin, Ebru and Atılgan, Ali Rana and Atılgan, Canan (2022) DHFR mutants modulate their synchronized dynamics with the substrate by shifting hydrogen bond occupancies. Journal of Chemical Information and Modeling, 62 (24). pp. 6715-6726. ISSN 1549-9596 (Print) 1549-960X (Online)

Ilter, Metehan and Kasmer, Ramazan and Jalalypour, Farzaneh and Atılgan, Canan and Topcu, Ozan and Karakas, Nihal and Sensoy, Özge (2022) Inhibition of mutant RAS-RAF interaction by mimicking structural and dynamic properties of phosphorylated RAS. eLife, 11 . ISSN 2050-084X

Fındık, Başak Koca and Çilesiz, Umut and Bali, Semiha Kevser and Atılgan, Canan and Aviyente, Viktorya and Dedeoğlu, Burcu (2022) Investigation of iron release from the N- and C-lobes of human serum transferrin by quantum chemical calculations. Organic and Biomolecular Chemistry, 20 (44). pp. 8766-8774. ISSN 1477-0520 (Print) 1477-0539 (Online)

Piepoli, Sofia and Barakat, Sarah Mohammed Mohammed and Noğay, Liyne and Şimşek, Büşra and Akköse, Ümit and Taşkıran, Hakan and Tolay, Nazife and Gezen, Melike and Yeşilada, Canberk Yarkın and Tuncay, Mustafa and Adebali, Ogün and Atılgan, Canan and Erman, Batu (2022) Sibling rivalry among the ZBTB transcription factor family: homodimers versus heterodimers. Life Science Alliance, 5 (11). ISSN 2575-1077

Atılgan, Ali Rana and Atılgan, Canan (2022) Computational strategies for protein conformational ensemble detection. Current Opinion in Structural Biology, 72 . pp. 79-87. ISSN 0959-440X (Print) 1879-033X (Online)

Burak Okan, Osman and Turgut, Deniz and Atılgan, Canan and Atılgan, Ali Rana and Ozisik, Rahmi (2022) Could network structures generated with simple rules imposed on a cubic lattice reproduce the structural descriptors of globular proteins? Journal of Complex Networks, 10 (1). ISSN 2051-1310 (Print) 2051-1329 (Online)

Manna, Madhu Sudan and Tamer, Yusuf Talha and Gaszek, Ilona and Poulides, Nicole and Ahmed, Ayesha and Wang, Xiaoyu and Toprak, Furkan C.R. and Woodard, Da Nae R. and Koh, Andrew Y. and Williams, Noelle S. and Borek, Dominika and Atılgan, Ali Rana and Hulleman, John D. and Atılgan, Canan and Tambar, Uttam and Toprak, Erdal (2021) A trimethoprim derivative impedes antibiotic resistance evolution. Nature Communications, 12 (1). ISSN 2041-1723

Güçlü, Tandaç Fürkan and Atılgan, Ali Rana and Atılgan, Canan (2021) Dynamic community composition unravels allosteric communication in pdz3. Journal of Physical Chemistry B, 125 (9). pp. 2266-2276. ISSN 1520-6106 (Print) 1520-5207 (Online)

Güçlü, Tandaç Fürkan and Kocatuğ, Nazlı and Atılgan, Ali Rana and Atılgan, Canan (2021) N-terminus of the third PDZ domain of PSD-95 orchestrates allosteric communication for selective ligand binding. Journal of Chemical Information and Modeling, 61 (1). pp. 347-357. ISSN 1549-9596 (Print) 1549-960X (Online)

Abdizadeh, Haleh and Jalalypour, Farzaneh and Atılgan, Ali Rana and Atılgan, Canan (2020) A coarse-grained methodology identifies intrinsic mechanisms that dissociate interacting protein pairs. Frontiers in Molecular Biosciences, 7 . ISSN 2296-889X

Jalalypour, Farzaneh and Sensoy, Ozge and Atılgan, Canan (2020) Perturb-scan-pull: a novel method facilitating conformational transitions in proteins. Journal of Chemical Theory and Computation, 16 (6). pp. 3825-3841. ISSN 1549-9618 (Print) 1549-9626 (Online)

Piepoli, Sofia and Alt, Aaron Oliver and Atılgan, Canan and Mancini, Erika Jazmin and Erman, Batu (2020) Structural analysis of the PATZ1 BTB domain homodimer. Acta Crystallographica Section D: Structural Biology, 76 . pp. 581-593. ISSN 2059-7983

Seviniş Özbulut, Emine Billur and Seven, Merve Senem and Bilge, Kaan and Akkaş Mohammadmoradi, Tuğçe and Taş, Cüneyt Erdinç and Yıldız, Burçin and Atılgan, Canan and Menceloğlu, Yusuf Z. and Ünal, Serkan (2020) Blends of highly branched and linear poly(arylene ether sulfone)s: multiscale effect of the degree of branching on the morphology and mechanical properties. Polymer, 188 . ISSN 0032-3861 (Print) 1873-2291 (Online)

Tamer, Yusuf Talha and Gazsek, Ilona K. and Abdizadeh, Haleh and Batur, Tuğçe and Reynolds, Kimberly and Atılgan, Ali Rana and Atılgan, Canan and Toprak, Erdal (2019) High-order epistasis in catalytic power of dihydrofolate reductase gives rise to a rugged fitness landscape in the presence of trimethoprim selection. Molecular Biology and Evolution, 36 (7). pp. 1533-1550. ISSN 0737-4038 (Print) 1537-1719 (Online)

Seven, Merve Senem and Oğuz, Oğuzhan and Menceloğlu, Yusuf Z. and Atılgan, Canan (2019) Tuning interaction parameters of thermoplastic polyurethanes in a binary solvent to achieve precise control over microphase separation. Journal of Chemical Information and Modeling (SI), 59 (5). pp. 1946-1956. ISSN 1549-9596 (Print) 1549-960X (Online)

Bülbül, Gonca and Liu, Gökşin and Vithalapur, Namrata Rao and Atılgan, Canan and Sayers, Zehra and Pourmand, Nader (2019) Employment of iron-binding protein from Haemophilus influenzae in functional nanopipettes for iron monitoring. ACS Chemical Neuroscience (SI), 10 (4). pp. 1970-1977. ISSN 1948-7193 (Print) 1948-7193 (Online)

Ross, Caroline and Nizami, Bilal and Glenister, Michael and Amamuddy, Olivier Sheik and Atılgan, Ali Rana and Atılgan, Canan and Bishop, Özlem Tastan (2018) MODE-TASK: large-scale protein motion tools. Bioinformatics, 34 (21). pp. 3759-3763. ISSN 1367-4803 (Print) 1460-2059 (Online)

Ross, Caroline Jane and Atılgan, Ali Rana and Taştan Bishop, Özlem and Atılgan, Canan (2018) Unraveling the motions behind Enterovirus 71 uncoating. Biophysical Journal, 114 (4). pp. 822-838. ISSN 0006-3495 (Print) 1542-0086 (Online)

Penkler, David L. and Atılgan, Canan and Taştan Bishop, Özlem (2018) Allosteric modulation of human Hsp90α conformational dynamics. Journal of Chemical Information and Modeling, 58 (2). pp. 383-404. ISSN 1549-9596 (Print) 1549-960X (Online)

Abdizadeh, Haleh and Atılgan, Ali Rana and Atılgan, Canan and Dedeoğlu, Burcu (2017) Computational approaches for deciphering the equilibrium and kinetic properties of iron transport proteins. Metallomics, 9 (11). pp. 1513-1533. ISSN 1756-5901 (Print) 1756-591X (Online)

Avaz, Merve Senem and Oğuz, Oğuzhan and Kurt, Hasan and Menceloğlu, Yusuf Z. and Atılgan, Canan (2017) Soft segment length controls morphology of poly(ethylene oxide) based segmented poly(urethane-urea) copolymers in a binary solvent. Computational Materials Science, 138 . pp. 58-69. ISSN 0927-0256 (Print) 1879-0801 (Online)

Brown, David K. and Penkler, David L. and Amamuddy, Olivier Sheik and Ross, Caroline and Atılgan, Ali Rana and Atılgan, Canan and Bishop, Özlem Taştan (2017) MD-TASK: a software suite for analyzing molecular dynamics trajectories. Bioinformatics, 33 (17). pp. 2768-2771. ISSN 1367-4803 (Print) 1460-2059 (Online)

Penkler, David and Şensoy, Özge and Atılgan, Canan and Tastan Bishop, Özlem (2017) Perturbation-response scanning reveals key residues for allosteric control in Hsp70. Journal of Chemical Information and Modeling, 57 (6). pp. 1359-1374. ISSN 1549-9596 (Print) 1549-960X (Online)

Abdizadeh, Haleh and Tamer, Yusuf Talha and Acar, Ömer and Toprak, Erdal and Atılgan, Ali Rana and Atılgan, Canan (2017) Increased substrate affinity in the escherichia coli L28R dihydrofolate reductase mutant causes trimethoprim resistance. Physical Chemistry Chemical Physics, 19 (18). pp. 11416-11428. ISSN 1463-9076 (Print) 1463-9084 (Online)

Abdizadeh, Haleh and Atılgan, Ali Rana and Atılgan, Canan (2017) Mechanisms by which salt concentration moderates the dynamics of human serum transferrin. Journal of Physical Chemistry B, 121 (18). pp. 4778-4789. ISSN 1520-6106 (Print) 1520-5207 (Online)

Özden-Yenigün, Elif and Atılgan, Canan and Elliott, James A. (2017) Multi-scale modelling of carbon nanotube reinforced crosslinked interfaces. Computational Materials Science, 129 . pp. 279-289. ISSN 0927-0256 (Print) 1879-0801 (Online)

Furuncuoğlu Özaltın, Tuğba and Aviyente, Viktorya and Atılgan, Canan and Demirel, Levent (2017) Multiscale modeling of poly(2-isopropyl-2-oxazoline) chains in aqueous solution. European Polymer Journal, 88 . pp. 594-604. ISSN 0014-3057 (Print) 1873-1945 (Online)

Şensoy, Özge and Atılgan, Ali Rana and Atılgan, Canan (2017) FbpA iron storage and release are governed by periplasmic microenvironments. Physical Chemistry Chemical Physics, 19 (8). pp. 6064-6075. ISSN 1463-9076 (Print) 1463-9084 (Online)

Abdizadeh, Haleh and Atılgan, Canan (2016) Predicting long term cooperativity and specific modulators of receptor interactions in human transferrin from dynamics within a single microstate. Physical Chemistry Chemical Physics, 18 (11). pp. 7916-7926. ISSN 1463-9076 (Print) 1463-9084 (Online)

Abdizadeh, Haleh and Güven, Gökçe and Atılgan, Ali Rana and Atılgan, Canan (2015) Perturbation response scanning specifies key regions in subtilisin serine protease for both function and stability. Journal of Enzyme Inhibition and Medicinal Chemistry, 30 (6). pp. 867-873. ISSN 1475-6366 (Print) 1475-6374 (Online)

Özbaykal, Gizem and Atılgan, Ali Rana and Atılgan, Canan (2015) In silico mutational studies of Hsp70 disclose sites with distinct functional attributes. Proteins: Structure, Function and Bioinformatics, 83 (11). pp. 2077-2090. ISSN 0887-3585 (Print) 1097-0134 (Online)

Abdizadeh, Haleh and Atılgan, Ali Rana and Atılgan, Canan (2015) Detailed molecular dynamics simulations of human transferrin provide insights into iron release dynamics at serum and endosomal pH. Journal of Biological Inorganic Chemistry, 20 (4). pp. 705-718. ISSN 0949-8257 (Print) 1432-1327 (Online)

Güven, Gökçe and Atılgan, Ali Rana and Atılgan, Canan (2014) Protonation states of remote residues affect binding-release dynamics of the ligand but not the conformation of apo ferric binding protein. Journal of Physical Chemistry B, 118 (40). pp. 11677-11687. ISSN 1520-6106 (Print) 1520-5207 (Online)

Aykut, Ayşe Özlem and Atılgan, Ali Rana and Atılgan, Canan (2013) Designing molecular dynamics simulations to shift populations of the conformational states of calmodulin. PLoS Computational Biology, 9 (12). ISSN 1553-734X

Özden-Yenigün, Elif and Şimşek, Eren and Menceloğlu, Yusuf Z. and Atılgan, Canan (2013) Molecular basis for solvent dependent morphologies observed on electrosprayed surfaces. Physical Chemistry Chemical Physics, 15 (41). pp. 17862-17872. ISSN 1463-9076 (Print) 1463-9084 (Online)

Atılgan, Canan and İnanç, İbrahim and Atılgan, Ali Rana (2012) On modifying properties of polymeric melts by nanoscopic particles. Journal of Polymer Science Part B: Polymer Physics, 50 (23). pp. 1653-1662. ISSN 0887-6266 (Print) 1099-0488 (Online)

Atılgan, Ali Rana and Atılgan, Canan (2012) Local motifs in proteins combine to generate global functional moves. Briefings in Functional Genomics (Sl), 11 (6). pp. 479-488. ISSN 2041-2649 (Print) 2041-2657 (Online)

Negi, Sunita and Aykut, Ayşe Özlem and Atılgan, Ali Rana and Atılgan, Canan (2012) Calmodulin readily switches conformation upon protonating high pK(a) acidic residues. Journal of Physical Chemistry B, 116 (24). pp. 7145-7153. ISSN 1520-6106

Atılgan, Canan and Okan, Osman Burak and Atılgan, Ali Rana (2012) Network-based models as tools hinting at nonevident protein functionality. Annual Review of Biophysics, 41 . pp. 205-225. ISSN 1936-122X (Print) 1936-1238 (Online)

Özaltın, Furuncuoğlu T. and Değirmenci, İsa and Aviyente, Viktorya and Atılgan, Canan and De Sterck, B. and Van Speybroeck, V. and Waroquier, M. (2011) Controlling the tacticity in the polymerization of n-isopropylacrylamide: a computational study. Polymer, 52 (24). pp. 5503-5512. ISSN 0032-3861

Atılgan, Ali Rana and Aykut, Ayşe Özlem and Atılgan, Canan (2011) Subtle pH differences trigger single residue motions for moderating conformations of calmodulin. Journal of Chemical Physics, 135 (15). ISSN 0021-9606

Turgut, Deniz and Atılgan, Ali Rana and Atılgan, Canan (2010) Assortative mixing in close-packed spatial networks. PLoS One, 5 (12). ISSN 1932-6203

Atılgan, Canan and Okan, Osman Burak and Atılgan, Ali Rana (2010) How orientational order governs collectivity of folded proteins. Proteins: Structure, Function, Bioinformatics, 78 (16). pp. 3363-3375. ISSN 1097-0134

Meersman, Filip and Atılgan, Canan and Miles, Andrew J. and Bader, Reto and Shang, Weifeng and Matagne, Andre and Wallace, B. A. and Koch, Michel H. J. (2010) Consistent picture of the reversible thermal unfolding of hen egg-white lysozyme from experiment and molecular dynamics. Biophysical Journal, 99 (7). pp. 2255-2263. ISSN 0006-3495

Servantie, James and Atılgan, Canan and Atılgan, Ali Rana (2010) Depth dependent dynamics in the hydration shell of a protein. Journal of Chemical Physics, 133 (8). ISSN 0021-9606

Atılgan, Canan and Gerek, Z. N. and Özkan, S. B. and Atılgan, Ali Rana (2010) Manipulation of conformational change in proteins by single-residue perturbations. Biophysical Journal, 99 (3). pp. 933-943. ISSN 0006-3495

Kaçar, Gökhan and Atılgan, Canan and Özen, Alimet Sema (2010) Mapping and reverse-mapping of the morphologies for a molecular understanding of the self-assembly of fluorinated block copolymers. Journal of Physical Chemistry C, 114 (1). pp. 370-382. ISSN 1932-7447

Topal, Kevser Göçmen and Atılgan, Canan and Demir, Ayhan S. and Aviyente, Viktorya (2010) Understanding the mode of action of ThDP in benzoylformate decarboxylase. Biopolymers, 93 (1). pp. 32-46. ISSN 0006-3525

Atılgan, Canan and Atılgan, Ali Rana (2009) Perturbation-response scanning reveals ligand entry-exit mechanisms of ferric binding protein. PLoS Computational Biology, 5 (10). pp. 1-14. ISSN 1553-734X

Okan, Osman Burak and Atılgan, Ali Rana and Atılgan, Canan (2009) Nanosecond motions in proteins impose bounds on the timescale distributions of local dynamics. Biophysical Journal, 97 (7). pp. 2080-2088. ISSN 0006-3495

Can, Hatice and Kaçar, Gökhan and Atılgan, Canan (2009) Surfactant formation efficiency of fluorocarbon-hydrocarbon oligomers in supercritical CO2. Journal of Chemical Physics, 131 (12). ISSN 0021-9606

Atılgan, Canan and Demirel, Güven and Atılgan, Ali Rana (2008) Collective behavior of El Farol attendees. Advances in Complex Systems, 11 (4). pp. 629-639. ISSN 0219-5259

Atılgan, Canan and Aykut, Ayşe Özlem and Atılgan, Ali Rana (2008) How a vicinal layer of solvent modulates the dynamics of proteins. Biophysical Journal, 94 . pp. 79-89. ISSN 0006-3495

Özen, Alimet Sema and Atılgan, Canan and Sönmez, Gürsel (2007) Noncovalent intramolecular interactions in the monomers and oligomers of the acceptor and donor type of low band gap conducting polymers. Journal of Physical Chemistry C, 111 (44). pp. 16362-16371. ISSN 1932-7447

Atılgan, Canan and Aviyente, Viktorya (2007) Hybrid usage of computational tools in drug synthesis. Current Computer - Aided Drug Design, 3 (2). pp. 149-159. ISSN 1573-4099

Atılgan, Ali Rana and Turgut, Deniz and Atılgan, Canan (2007) Screened nonbonded interactions in native proteins manipulate optimal paths for robust residue communication. Biophysical Journal, 92 (9). pp. 3052-3062. ISSN 0006-3495

Atılgan, Ali Rana and Turgut, Deniz and Atılgan, Canan (2007) A Few designed-in interactions imposed on chain connectivity are sufficient for robust residue communications. Biophysical Journal, Suppl (Abstra). 217A-218A. ISSN 0006-3495

Atılgan, Canan and Sezerman, Ayşe Özlem and Baloğlu, Çetin and Sirer, Irmak and Okan, Osman Burak and Atılgan, Ali Rana (2007) Solvent mobility and surface group flexibility at the dynamical transition. Biophysical Journal, Suppl (Abstra). 405A-406A. ISSN 0006-3495

Özen, Alimet Sema and Şen, Ünal and Atılgan, Canan (2006) Complete mapping of the morphologies of some linear and graft fluorinated co-oligomers in an aprotic solvent by dissipative particle dynamics. The Journal of chemical physics, 124 (6). ISSN 0021-9606

Bilgin, Nalan and Atılgan, Canan and Menceloğlu, Yusuf Z. (2005) Synthesis of Fluorinated Segment Containing Oligomers for Supercritical CO2 Applications. Polymer, 43 (21). pp. 5312-5322. ISSN 0032-3861

Atılgan, Ali Rana and Atılgan, Canan (2004) Thermodynamics of residue networks in folded proteins. WSEAS Transactions in Biology and Biomedicine, 1 (2). pp. 205-209. ISSN 1109-9518

Papers in Conference Proceedings

Atılgan, Canan and Liu, Gökşin and Jalalpour, Farzaneh and Ekmen, Erhan and Berksöz, Melike and Atılgan, Ali Rana and Sayers, Zehra (2023) Increased ionic strength triggers multiple conformations in both apo and holo forms of bacterial ferric binding protein. In: Biophysical Society Annual Meeting, San Diego, CA, USA

Liu, Gökşin and Atılgan, Canan and Sayers, Zehra (2020) Structure-function investigation of haemophilus influenzae ferric binding protein under changing environmental conditions. In: 64th Annual Meeting of the Biophysical-Society, San Diego, CA

Liu, Gökşin and Altun, Ezgi and Ünal, Süleyman Mert and Atılgan, Canan and Sayers, Zehra (2019) Characterization and iron binding dynamics of haemophilus influenzae ferric binding protein. In: 63rd Annual Meeting of the Biophysical-Society, Baltimore, MD

Liu, Gökşin and Atılgan, Canan and Sayers, Zehra (2018) Structural characterization of haemophilus influenzae ferric bindind protein in different environmental conditions. In: XVII International Small Angle Scattering Conference - SAS2018, Traverse City, Michigan

Abdizadeh, Haleh and Atılgan, Ali Rana and Atılgan, Canan (2016) Computational modeling of iron binding and release in human serum transferrin. In: 41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Turkey

Abdizadeh, Haleh and Acar, Ömer and Güçlü, Tandaç Fürkan and Tamer, Yusuf Talha and Altınuşak, Tuğçe and Toprak, Erdal and Atılgan, Ali Rana and Atılgan, Canan (2016) Computational assessment of trimethoprim resistance in dihydrofolate reductase. In: 60th Annual Meeting of the Biophysical Society, Los Angeles, CA

Özden Yenigün, Elif and Atılgan, Canan and Elliott, James (2015) Tuning interface via multi-scale modeling for superior carbon nanotube-polymer nanocomposites/ Yarns. In: 20th International Conference on Composite Materials (ICCM20), Copenhagen, Denmark

Abdizadeh, Haleh and Atılgan, Canan (2015) Mechanically hot spots correlate with cooperativity and function in human transferrin. In: 10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress, Dresden, Germany

Özden Yenigün, Elif and Şimşek, Eren and Menceloğlu, Yusuf Z. and Atılgan, Canan (2013) Theoretical and experimental investigation of dual-scale roughness via electro-spraying. In: 246th National Meeting of the American-Chemical-Society (ACS), Indianapolis, IN

Atılgan, Ali Rana and Aykut, Ayşe Özlem and Atılgan, Canan (2013) Non-equilibrium fluctuation theorems, redundant paths in proteins, and elucidating conformational changes by single-residue perturbations. In: 57th Annual Meeting of the Biophysical-Society, Philadelphia, PA

Atılgan, Canan and Güven, Gökçe and Atılgan, Ali Rana (2013) Structural basis of how ferric binding proteins utilize pH differences for controlled release of iron. In: 57th Annual Meeting of the Biophysical-Society, Philadelphia, PA

Negi, Sunita and Atılgan, Ali Rana and Atılgan, Canan (2012) Driving calmodulin protein towards conformational shift by changing ionization states of select residues. In: 23rd IUPAP C20 Conference on Computational Physics (CCP 2011), Gatlinburg, Tennessee

Atılgan, Canan and İnanç, İbrahim and Atılgan, Ali Rana (2012) Effect of van der Waals interaction strength and nanocluster size on the dynamical and mechanical properties of 1,4-cis-polybutadiene melts. In: Materials Research Society Fall Meeting 2011, Boston

Özden Yenigün, Elif and Atılgan, Canan and Menceloğlu, Yusuf Z. and Papila, Melih (2012) Tracing the superior thermo-mechanical properties in nanocomposites of crosslinked fillers at the interface: molecular point of view. In: 15th European Conference on Composite Materials (ECCM15), Venice, Italy

Özden Yenigün, Elif and Atılgan, Ali Rana and Bilge, Kaan and Menceloğlu, Yusuf Z. and Atılgan, Canan and Papila, Melih (2011) Designed-in molecular interactions lead to superior thermo-mechanical properties in nanocomposites. In: 2010 MRS Fall Meeting, Boston, Massachusetts

Aykut, Ayşe Özlem and Atılgan, Ali Rana and Atılgan, Canan (2011) Molecular recognition mechanisms of calmodulin examined by perturbation-response scanning. In: 2010 MRS Fall Meeting, Boston, Massachusetts

Atılgan, Canan and İnanç, İbrahim and Atılgan, Ali Rana (2010) Long-range structural regularities and collectivity of folded proteins. In: 2009 MRS Fall Meeting, Boston, MA

Atılgan, Canan and Demirel, Güven and Atılgan, Ali Rana (2007) Landscape Dynamics of El Farol Attendees. In: The 2007 International Conference of the System Dynamics Society, Boston

Book Section / Chapter

Atılgan, Canan (2018) Computational methods for efficient sampling of protein landscapes and disclosing allosteric regions. In: Karabencheva-Christova, T. G. and Christov, C. Z., (eds.) Advances in Protein Chemistry and Structural Biology. Academic Press, pp. 33-63. ISBN 9780128139165