Items where Division is "Biological Sciences & Bio Eng." and Year is 2012

A

Açıksöz Özden, Seher Bahar (2012) Role of nitrogen nutrition in biofortification of durum wheat with iron. [Thesis]

Adoro, Stanley and McCaughtry, Thomas and Erman, Batu and Alag, Amala and Van Laethem, François and Park, Jung-Hyun and Tai, Xuguang and Kimura, Motoko and Wang, Lie and Grinberg, Alex and Kubo, Masato and Bosselut, Remy and Love, Paul and Singer, Alfred (2012) Coreceptor gene imprinting governs thymocyte lineage fate. The EMBO Journal, 31 (2). pp. 366-377. ISSN 0261-4189 (print) ; 1460-2075 (online)

Akpınar, Bala Anı and Avşar, Bihter and Lucas, Stuart J. and Budak, Hikmet (2012) Plant abiotic stress signaling. Plant Signaling & Behavior, 7 (11). pp. 1450-1455. ISSN 1559-2316 (Print) 1559-2324 (Online)

Aktürk, Anıl (2012) Characterization of A. thaliana G-Protein gamma subunit (AGG2) and investigation of DTT effect on its oligomeric state. [Thesis]

Albayrak, Aydın and Sezerman, Uğur (2012) Discrimination of thermophilic and mesophilic proteins using reduced amino acid alphabets with n-grams. Current Bioinformatics, 7 (2). pp. 152-158. ISSN 1574-8936

Altıntaş, Zeynep (2012) Development of nanoparticle-modified sensor platform for cancer marker detection. [Thesis]

Altıntaş, Zeynep and Tothill, I. E. (2012) DNA-based biosensor platforms for the detection of TP53 mutation. Sensors and Actuators B: Chemical, 169 . pp. 188-194. ISSN 0925-4005

Anbar, Michael and Gül, Özgür and Lamed, Raphael and Sezerman, Uğur and Bayer, Edward A. (2012) Improved thermostability of clostridium thermocellum endoglucanase Cel8A by using consensus-guided mutagenesis. Applied and Environmental Microbiology, 78 (9). pp. 3458-3464. ISSN 0099-2240 (print) ; 1098-5336 (online)

Atılgan, Ali Rana and Atılgan, Canan (2012) Local motifs in proteins combine to generate global functional moves. Briefings in Functional Genomics (Sl), 11 (6). pp. 479-488. ISSN 2041-2649 (Print) 2041-2657 (Online)

B

Bakır, Burcu (2012) Bioinformatics approaches to associate single nucleotide polymorphisms with human diseases according to their pathway related context. [Thesis]

Bakır-Güngör, Burcu and Remmers, Elaine and Kastner, Daniel L. and Meguro, Akira and Mizuki, Nobuhisa and Gül, Ahmet and Sezerman, Uğur (2012) The identification of pathway markers in Behcet's disease using genomewide association data from two different populations. In: Annual Scientific Meeting of the American-College-of-Rheumatology (ACR) and Association-of-Rheumatology-Health-Professionals (ARHP), Washington, DC

Bayram Akçapınar, Günseli and Gül, Özgür and Sezerman, Uğur (2012) From in silico to in vitro: modelling and production of trichoderma reesei endoglucanase 1 and its mutant in pichia pastoris. Journal of Biotechnology, 159 (1-2). pp. 61-68. ISSN 0168-1656 (print) ; 1873-4863 (online)

Bodur, Çağrı and Başağa, Hüveyda (2012) Bcl-2 inhibitors: emerging drugs in cancer therapy. Current Medicinal Chemistry (CMC), 19 (12). pp. 1804-1820. ISSN 0929-8673

Bodur, Çağrı and Kütük, Özgür and Tezil, Tuğsan and Başağa, Hüveyda (2012) Inactivation of Bcl-2 through I kappa B kinase (IKK)-dependent phosphorylation mediates apoptosis upon exposure to 4-hydroxynonenal (HNE). Journal of Cellular Physiology, 227 (11). pp. 3556-3565. ISSN 0021-9541

Budak, Hikmet (2012) Plant abiotic stress signalling. (Accepted)

C

Carlson, Dorthe and Norgaard, Jan Vaerum and Torun, Bülent and Çakmak, İsmail and Poulsen, Hanne Damgaard (2012) Bioavailability of trace elements in beans and zinc-biofortified wheat in pigs. Biological Trace Element Research, 150 (1-3). pp. 147-153. ISSN 0163-4984 (Print) 1559-0720 (Online)

Ceyhan, Ceran and Çokol, Murat and Cingöz, Sultan and Taşan, İpek and Öztürk, Mehmet and Yağcı, Tamer (2012) Novel anti-HER2 monoclonal antibodies: synergy and antagonism with tumor necrosis factor alpha. BMC Cancer, 12 . ISSN 1471-2407 (Print) 1471-2407 (Online)

D

Durmaz, Emel (2012) Protein engineering studies on bacillus thermocatenulatus lipase. [Thesis]

G

Ghandilyan, Artak and Kutman, Ümit Barış and Yıldız Kutman, Bahar and Çakmak, İsmail and Aarts, Mark G. M. (2012) Genetic analysis of the effect of zinc deficiency on Arabidopsis growth and mineral concentrations. Plant and Soil, 361 (1-2). pp. 227-239. ISSN 0032-079X (Print) 1573-5036 (Online)

Gözüaçık, Devrim (2012) Otofaji analiz yöntemleri ve uygulama aşamaları. In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) II. Hücre Ölümü Araştırma Teknikleri Teorik Kursu. Eskisehir Osmangazi Üniversitesi Yayınları; 212. Eskisehir Osmangazi Üniversitesi, Eskisehir, pp. 133-146. ISBN 978-975-7936-95-4

Gözüaçık, Devrim (2012) Otofaji ve sinyal yolakları. In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) II. Hücre Ölümü Araştırma Teknikleri Teorik Kursu. Eskisehir Osmangazi Üniversitesi Yayınları; 212. Eskisehir Osmangazi Üniversitesi, Eskisehir, pp. 49-60. ISBN 978-975-7936-95-4

K

Kantar, Melda and Akpınar, Bala Anı and Valarik, Miroslav and Lucas, Stuart J. and Dolezel, Jaroslav and Hernandez, Pilar and Budak, Hikmet (2012) Subgenomic analysis of microRNAs in polyploid wheat. Functional and Integrative Genomics, 12 (3). pp. 465-479. ISSN 1438-793X (Print) 1438-7948 (Online)

Kaplan Türköz, Burcu and Zakharyuta, Anastasia and Şeşen, Muhsincan and Taralp, Alpay and Koşar, Ali (2012) Reversibility of functional and structural changes of lysozyme subjected to hydrodynamic flow. Journal of Nanotechnology in Engineering and Medicine, 3 (1). 011006-011012. ISSN 1949-2944 (print) ; 1949-2952 (online)

Klionsky, Dan J. and Autophagy, Consortium and Gözüaçık, Devrim (2012) Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy, 8 (4). pp. 445-544. ISSN 1554-8627

Korkmaz, Gözde and Le Sage, Carlos and Tekirdağ, Kumsal Ayşe and Agami, Reuven and Gözüaçık, Devrim (2012) miR-376b controls starvation and mTOR inhibition-related autophagy by targeting ATG4C and BECN1. Autophagy, 8 (2). pp. 165-176. ISSN 1554-8627

Kutman, Ümit Barış and Yıldız Kutman, Bahar and Ceylan, Yasemin and Ova, Emir Ali and Çakmak, İsmail (2012) Contributions of root uptake and remobilization to grain zinc accumulation in wheat depending on post-anthesis zinc availability and nitrogen nutrition. Plant and Soil, 361 (1-2). pp. 177-187. ISSN 0032-079X (Print) 1573-5036 (Online)

Kuzuoğlu, Duygu and Cebeci Yalçınkaya, Özge and Akpınar, Bala Anı and Mitou, Geraldine and Korkmaz, Gözde and Gözüaçık, Devrim and Budak, Hikmet (2012) Autophagy-related gene, TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response. Planta, 236 (4). pp. 1081-1092. ISSN 0032-0935 (Print) 1432-2048 (Online)

L

Lucas, Stuart J. and Budak, Hikmet (2012) Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of triticum aestivum chromosome 1AL. PLoS One, 7 (7). ISSN 1932-6203

Lucas, Stuart J. and Simkova, Hana and Safar, Jan and Jurman, Irena and Cattonaro, Federica and Vautrin, Sonia and Bellec, Arnaud and Berges, Helene and Dolezel, Jaroslav and Budak, Hikmet (2012) Functional features of a single chromosome arm in wheat (1AL) determined from its structure. Functional and Integrative Genomics, 12 (1). pp. 173-182. ISSN 1438-793X (Print) 1438-7948 (Online)

Lyons, Graham and Çakmak, İsmail (2012) Agronomic biofortification of food crops with micronutrients. In: Bruulsema, Tom W. and Heffer, Patrick and Welch, Ross M. and Çakmak, İsmail and Moran, Kevin, (eds.) Fertilizing Crops to Improve Human Health: a Scientific Review Volume 1: Food and Nutrition Security. IPNI/IFA, Paris, France, pp. 97-122.

M

Manzeke, Grace M. and Mapfumo, Paul and Mtambanengwe, Florence and Chikowo, Regis and Tendayi, Takesure and Çakmak, İsmail (2012) Soil fertility management effects on maize productivity and grain zinc content in smallholder farming systems of Zimbabwe. Plant and Soil, 361 (1-2). pp. 57-69. ISSN 0032-079X (Print) 1573-5036 (Online)

Meydan, Cem and Sezerman, Uğur (2012) Representation of protein secondary structure using bond-orientational order parameters. In: 7th IAPR International Conference (PRIB 2012), Tokyo, Japan

N

Negi, Sunita and Atılgan, Ali Rana and Atılgan, Canan (2012) Driving calmodulin protein towards conformational shift by changing ionization states of select residues. In: 23rd IUPAP C20 Conference on Computational Physics (CCP 2011), Gatlinburg, Tennessee

O

Oral, Özlem and Irmak, Ster and Ekici, Sinan and Gözüaçık, Devrim (2012) Autophagy in urology (Ürolojide otofaji). In: Türkeri, Levent and Özer, Ayşe and Narter, Fehmi, (eds.) Moleküler Üroloji. Moleküler Üroloji: Ürolojik Hastalıkların Moleküler Temeli. Üroonkoloji Derneği Yayınları, İstanbul, pp. 271-283. ISBN 978-975-01697-2-4

Oral, Özlem and Öz-Arslan, Devrim and İtah, Zeynep and Naghavi, Atabak and Deveci, Remziye and Karaçalı, Sabire and Gözüaçık, Devrim (2012) Cleavage of Atg3 protein by caspase-8 regulates autophagy during receptor-activated cell death. Apoptosis, 17 (8). pp. 810-820. ISSN 1360-8185 (Print) 1573-675X (Online)

P

Perk, Osman Yavuz and Şeşen, Muhsincan and Gözüaçık, Devrim and Koşar, Ali (2012) Kidney stone erosion by micro scale hydrodynamic cavitation and consequent kidney stone treatment. Annals of Biomedical Engineering, 40 (9). pp. 1895-1902. ISSN 0090-6964 (Print) 1573-9686 (Online)

Phattarakul, N. and Rerkasem, B. and Li, L. J. and Wu, L. H. and Zou, C. Q. and Ram, H. and Sohu, V. S. and Kang, B. S. and Surek, H. and Kalaycı, M. and Yazıcı, Mustafa Atilla and Zhang, F. S. and Çakmak, İsmail (2012) Biofortification of rice grain with zinc through zinc fertilization in different countries. Plant and Soil, 361 (1-2). pp. 131-141. ISSN 0032-079X (Print) 1573-5036 (Online)

Prom-u-thai, Chanakan and Rerkasem, Benjavan and Yazıcı, Mustafa Atilla and Çakmak, İsmail (2012) Zinc priming promotes seed germination and seedling vigor of rice. Journal of Plant Nutrition and Soil Science, 175 (3). pp. 482-488. ISSN 1436-8730

R

Roçi, Irena (2012) Toward anti-cancer drugs: selection of anti-VEGF and anti-HER2 aptamer to inhibit cancer biomarkers. [Thesis]

T

Tekdal, Dilek and Çetiner, Selim (2012) Isolation and characterization of agrobacterium tumefaciens strains from the artificial lake water. In: 15th European Congress on Biotechnology, Istanbul,Turkey

Tezil, Tuğsan (2012) Probing the effect of IKK on FOXO3: a regulatory mechanism of apoptosis and autophagy in chemoresistance. [Thesis]

Tezil, Tuğsan and Bodur, Çağrı and Kütük, Özgür and Başağa, Hüveyda (2012) IKK-beta mediates chemoresistance by sequestering FOXO3; a critical factor for cell survival and death. Cellular Signalling, 24 (6). pp. 1361-1368. ISSN 0898-6568

Timuçin, Can and Gül, Özgür and Kütük, Özgür and Başağa, Hüveyda (2012) Antibody array-based immunosensor for detecting cardiovascular disease risk markers. Journal of Immunoassay and Immunochemistry, 33 (3). pp. 275-290. ISSN 1532-1819

Tukel, Raşit and Atasever Arslan, Belkıs and Ertekin, Banu Aslantaş and Ertekin, Erhan and Oflaz, Serap and Ergen, Arzu and Kuruca, Serap Erdem and İşbir, Turgay (2012) Decreased IFN-gamma and IL-12 levels in panic disorder. Journal of Psychosomatic Research, 73 (1). pp. 63-67. ISSN 0022-3999

U

Uzbaş, Fatma and Sezerman, Uğur and Hartl, Lukas and Kubicek, Christian P. and Seiboth, Bernhard (2012) A homologous production system for Trichoderma reesei secreted proteins in a cellulase-free background. Applied Microbiology and Biotechnology, 93 (4). pp. 1601-1608. ISSN 0175-7598 (print) ; 1432-0614 (online)

V

Vuruşaner, Beyza and Poli, Giuseppe and Başağa, Hüveyda (2012) Tumor suppressor genes and ROS: complex networks of interactions. Free Radical Biology and Medicine, 52 (1). pp. 7-18. ISSN 0891-5849 (print) ; 1873-4596 (online)

Vuruşaner Aktaş, Beyza and Poli, Giuseppe and Başağa, Hüveyda (2012) Survival signals induced by low concentrations of 27-hydroxycholesterol in human monocytic cells via ERK activation. In: Society for Free Radical Research International 16th Biennial Meeting, Imperial College London, UK

X

Xue, Yan-Fang and Yue, Shan-Chao and Zhang, Yue-Qiang and Cui, Zhen-Ling and Chen, Xin-Ping and Yang, Fu-Chun and Çakmak, İsmail and McGrath, Steve P. and Zhang, Fu-Suo and Zou, Chun-Qin (2012) Grain and shoot zinc accumulation in winter wheat affected by nitrogen management. Plant and Soil, 361 (1-2). pp. 153-163. ISSN 0032-079X (Print) 1573-5036 (Online)

Y

Yavuz, Ahmet Sinan and Özer, Buğra and Sezerman, Uğur (2012) Pattern recognition for subfamily level classification of GPCRs using motif distillation and distinguishing power evaluation. In: 7th IAPR International Conference (PRIB 2012), Tokyo, Japan

Yılmaz, Özlem and Öztürk, Levent and Altıntaş, Gamze and Türkan, İsmail and Çakmak, İsmail (2012) Kükürt beslenmesinin, buğdayda (Triticum turgidum, Poaceae) vejetatif dönemde çinko absorpsiyonu ve taşınmasına etkilerinin araştırılması. In: 21. Ulusal Biyoloji Kongresi, Ege Üniversitesi, İzmir

Yükselen, Onur (2012) Combining in silico docking and molecular dynamics simulations to predict the impact of mutations on the substrate specificity of BTL2 lipase. [Thesis]

Z

Zhang, Yue-Qiang and Sun, Yi-Xiang and Ye, You-Liang and Karim, Md. Rezaul and Xue, Yan-Fang and Yan, Peng and Meng, Qing-Feng and Cui, Zhen-Ling and Çakmak, İsmail and Zhang, Fu-Suo and Zou, Chun-Qin (2012) Zinc biofortification of wheat through fertilizer applications in different locations of China. Field Crops Research, 125 . pp. 1-7. ISSN 0378-4290

Zou, C. Q. and Zhang, Y. Q. and Rashid, A. and Ram, H. and Savasli, E. and Arısoy, R. Z. and Ortiz-Monasterio, I. and Simunji, S. and Wang, Z. H. and Sohu, V. and Hassan, M. and Kaya, Y. and Önder, O. and Lungu, O. and Yaqub Mujahid, M. and Joshi, A. K. and Zelenskiy, Y. and Zhang, F. S. and Çakmak, İsmail (2012) Biofortification of wheat with zinc through zinc fertilization in seven countries. Plant and Soil, 361 (1-2). pp. 119-130. ISSN 0032-079X (Print) 1573-5036 (Online)

Ç

Çetiner, Selim (2012) Bt pamuk intihar mı ettiriyor? Tarla Sera Dergisi . pp. 18-22. ISSN 1309-9116

Çetiner, Selim (2012) GDO yasağı ne getiriyor? ne götürüyor? 1. Tarla Sera Dergisi . pp. 94-96. ISSN 1309-9116

Çetiner, Selim (2012) GDO yasağı ne getiriyor? ne götürüyor? 2. Tarla Sera Dergisi . pp. 110-113. ISSN 1309-9116

Çetiner, Selim (2012) GDO-Kanser ilişkisi kanıtlandı mı? Tarla Sera Dergisi (26). pp. 16-18. ISSN 1309-9116

Çetiner, Selim (2012) GDO: çağdaş cehalet. Tarla Sera Dergisi (25). pp. 16-18. ISSN 1309-9116

Çetiner, Selim (2012) Gıda egemenliği mi dediniz? Tarla Sera Dergisi . pp. 14-17. ISSN 1309-9116

Çetiner, Selim (2012) Kabak tadı. Tarla Sera Dergisi . pp. 14-17. ISSN 1309-9116

Çetiner, Selim (2012) Sessiz bahar ne diyor(du)? Tarla Sera Dergisi (23). pp. 18-21. ISSN 1309-9116

Çetiner, Selim (2012) STK'lar tarımsal biyoteknolojiye nasıl bakıyor? Tarla Sera Dergisi . pp. 16-20. ISSN 1309-9116

Çetiner, Selim (2012) Yerseniz... Tarla Sera Dergisi (24). pp. 16-19. ISSN 1309-9116

Çevik, Şafak Işıl and Keskin, Nazlı and Belkaya, Serkan and Özlü, Meral İlçim and Deniz, Emre and Tazebay, Uygar Halis and Erman, Batu (2012) CD81 interacts with the T cell receptor to suppress signaling. PLoS One, 7 (11). ISSN 1932-6203

Çıkım, Taha Abdullah and Kaya, Alihan and Gözüaçık, Devrim and Koşar, Ali (2012) Power reclamation efficiency of a miniature energy harvesting device using internal fluid flows. In: Global Conference on Global Warming 2012, Istanbul, Turkey

Çıkım, Taha Abdullah and Koşar, Ali and Gözüaçık, Devrim and Tatar, Oğuz (2012) Power reclamation efficiency of a miniature energy harvesting device using internal fluid flows. In: ASME International Mechanical Engineering Congress and Exposition, Houston, Texas

Çürük, Sebahattin and Çetiner, Selim and Yalçın-Mendi, Yeşim and Carmeli-Weissberg, Mira and Graber, Ellen and Gaba, Victor (2012) Food-grade sugar can promote differentiation in melon (Cucumis melo L.) tissue culture. In Vitro Cellular & Developmental Biology - Plant, 48 (6). pp. 600-608. ISSN 1054-5476 (Print) 1475-2689 (Online)