Items where Author is "Taştan, Öznur"

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Number of items: 19.

Article

Kuru, Halil İbrahim and Tepeli, Yasin İlkağan and Taştan, Öznur (2022) GEGE: predicting gene essentiality with graph embeddings. Duzce University Journal of Science and Technology, 10 (3). pp. 1567-1577. ISSN 2148-2446

Kuru, Halil Ibrahim and Taştan, Öznur and Cicek, Ercument (2022) MatchMaker: a deep learning framework for drug synergy prediction. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19 (4). pp. 2334-2344. ISSN 1545-5963 (Print) 1557-9964 (Online)

Kuru, Nurdan and Dereli, Onur and Akkoyun, Emrah and Bircan, Aylin and Taştan, Öznur and Adebali, Ogün (2022) PHACT: phylogeny-aware computing of tolerance for missense mutations. Molecular Biology and Evolution, 39 (6). ISSN 0737-4038 (Print) 1537-1719 (Online)

Olgun, Gulden and Taştan, Öznur (2022) miRCoop: identifying cooperating miRNAs via Kernel based interaction tests. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19 (3). pp. 1760-1771. ISSN 1545-5963 (Print) 1557-9964 (Online)

Özçelik, Duygu and Taştan, Öznur (2022) A weakly supervised clustering method for cancer subgroup identification. Balkan Journal of Electrical and Computer Engineering, 10 (2). pp. 178-186. ISSN 2147-284X

Yilmaz, Serhan and Fakhouri, Mohamad and Koyuturk, Mehmet and Ercument Cicek, A. and Taştan, Öznur (2022) Uncovering complementary sets of variants for predicting quantitative phenotypes. Bioinformatics, 38 (4). pp. 908-917. ISSN 1367-4803 (Print) 1460-2059 (Online)

Uner, Onur Can and Kuru, Halil Ibrahim and Cinbis, Ramazan Gokberk and Taştan, Öznur and Cicek, Ercument (2022) DeepSide: a deep learning approach for drug side effect prediction. IEEE/ACM Transactions on Computational Biology and Bioinformatics . ISSN 1545-5963 (Print) 1557-9964 (Online) Published Online First https://dx.doi.org/10.1109/TCBB.2022.3141103

Olgun, Gulden and Nabi, Afshan and Taştan, Öznur (2021) Correction to: NoRCE: non‑coding RNA sets cis enrichment tool (BMC Bioinformatics, (2021), 22, 1, (294), 10.1186/s12859-021-04112-9). BMC Bioinformatics, 22 (1). ISSN 1471-2105

Olgun, Gulden and Nabi, Afshan and Taştan, Öznur (2021) NoRCE: non-coding RNA sets cis enrichment tool. BMC Bioinformatics, 22 (1). ISSN 1471-2105

Kuru, Halil Ibrahim and Buyukozkan, Mustafa and Taştan, Öznur (2021) PRER: a patient representation with pairwise relative expression of proteins on biological networks. PLoS Computational Biology, 17 (5). ISSN 1553-734X (Print) 1553-7358 (Online)

Yilmaz, Serhan and Taştan, Öznur and Cicek, A. Ercument (2021) SPADIS: an algorithm for selecting predictive and diverse SNPs in GWAS. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 18 (3). pp. 1208-1216. ISSN 1545-5963 (Print) 1557-9964 (Online)

Caylak, Gizem and Taştan, Öznur and Cicek, A. Ercument (2021) A tool for detecting complementary single nucleotide polymorphism pairs in genome-wide association studies for epistasis testing. Journal of Computational Biology, 28 (4). pp. 378-380. ISSN 1066-5277 (Print) 1557-8666 (Online)

Caylak, Gizem and Taştan, Öznur and Cicek, A. Ercument (2021) Potpourri: an epistasis test prioritization algorithm via diverse SNP selection. Journal of Computational Biology, 28 (4). pp. 365-377. ISSN 1066-5277 (Print) 1557-8666 (Online)

Tepeli, Yasin İlkağan and Ünal, Ali Burak and Furkan, Mustafa Akdemir and Taştan, Öznur (2020) PAMOGK: A pathway graph kernel-based multiomics approach for patient clustering. Bioinformatics . ISSN 1367-4803 (Print) 1460-2059 (Online) Published Online First http://dx.doi.org/10.1093/bioinformatics/btaa655

Olgun, Gülden and Şahin, Özgür and Taştan, Öznur (2018) Discovering lncRNA mediated sponge interactions in breast cancer molecular subtypes. BMC Genomics, 19 . ISSN 1471-2164 (Print) 1471-2164 (Online)

Olgun, Gülden and Şahin, Özgür and Taştan, Öznur (2018) Discovering lncRNA mediated sponge interactions in breast cancer. (Accepted)

Papers in Conference Proceedings

Olgun, Gülden and Taştan, Öznur (2020) Functional enrichment analysis of deregulated long non-coding RNAs in cancer based on their genomic neighbors. In: 11th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB), Virtual (Accepted)

Tepeli, Yasin İlkağan and Ünal, Ali Burak and Akdemir, Mustafa Furkan and Taştan, Öznur (2020) PAMOGK: A pathway graph kernel based multi-omics clustering approach for discovering cancer patient subgroups. In: Satellite Workshop on Computational Cancer Biology (RECOMB-CCB) - Jointly with RECOMB 2020, Virtual

Kuru, Halil İbrahim and Büyüközkan, Mustafa and Taştan, Öznur (2020) PRER: A patient representation with pairwise relative expression of proteins on biological networks. In: Satellite Workshop on Computational Cancer Biology (RECOMB-CCB) - Jointly with RECOMB 2020, Virtual

This list was generated on Fri Dec 9 02:17:22 2022 +03.