Items where Author is "Kuru, Nurdan"

Article

Zhang, Jing and Kinch, Lisa and Katsonis, Panagiotis and Lichtarge, Olivier and Jagota, Milind and Song, Yun S. and Sun, Yuanfei and Shen, Yang and Kuru, Nurdan and Dereli, Onur and Adebali, Ogün and Alladin, Muttaqi Ahmad and Pal, Debnath and Capriotti, Emidio and Turina, Maria Paola and Savojardo, Castrense and Martelli, Pier Luigi and Babbi, Giulia and Casadio, Rita and Pucci, Fabrizio and Rooman, Marianne and Cia, Gabriel and Tsishyn, Matsvei and Strokach, Alexey and Hu, Zhiqiang and van Loggerenberg, Warren and Roth, Frederick P. and Radivojac, Predrag and Brenner, Steven E. and Cong, Qian and Grishin, Nick V. (2024) Assessing predictions on fitness effects of missense variants in HMBS in CAGI6. Human Genetics . ISSN 0340-6717 (Print) 1432-1203 (Online) Published Online First https://dx.doi.org/10.1007/s00439-024-02680-3

Dereli, Onur and Kuru, Nurdan and Akkoyun, Emrah and Bircan, Aylin and Taştan, Öznur and Adebali, Ogün (2024) PHACTboost: a phylogeny-aware pathogenicity predictor for missense mutations via boosting. Molecular Biology and Evolution, 41 (7). ISSN 0737-4038 (Print) 1537-1719 (Online)

Kuru, Nurdan and Dereli, Onur and Akkoyun, Emrah and Bircan, Aylin and Taştan, Öznur and Adebali, Ogün (2022) PHACT: phylogeny-aware computing of tolerance for missense mutations. Molecular Biology and Evolution, 39 (6). ISSN 0737-4038 (Print) 1537-1719 (Online)

Kuru, Nurdan and Birbil, Ş. İlker and Gürbüzbalaban, Mert and Yıldırım, Sinan (2022) Differentially private accelerated optimization algorithms. SIAM Journal on Optimization, 32 (2). pp. 795-821. ISSN 1052-6234 (Print) 1095-7189 (Online)

Özçelik, Elif and Kuru, Nurdan and Adebali, Ogün (2021) Phylostat: a web-based tool to analyze paralogous clade divergence in phylogenetic trees. Turkish Journal of Biology, 45 (6). pp. 667-673. ISSN 1300-0152 (Print) 1303-6092 (Online)

Kaya, Kamer and Öztoprak, Figen and Birbil, Ş. İlker and Cemgil, A. Taylan and Şimşekli, Umut and Kuru, Nurdan and Koptagel, Hazal and Öztürk, Mehmet Kaan (2019) A framework for parallel second order incremental optimization algorithms for solving partially separable problems. Computational Optimization and Applications, 72 (3). pp. 675-705. ISSN 0926-6003 (Print) 1573-2894 (Online)

Weinstein, Zohar B. and Kuru, Nurdan and Kiriakov, Szilvia and Palmer, Adam C. and Khalil, Ahmad S. and Clemons, Paul A. and Zaman, Muhammad H. and Roth, Frederick P. and Çokol, Murat (2018) Modeling the impact of drug interactions on therapeutic selectivity. Nature Communications, 9 . ISSN 2041-1723

Çokol, Murat and Kuru, Nurdan and Bıçak, Ece and Larkins-Ford, Jonah and Aldridge, Bree B. (2017) Efficient measurement and factorization of high-order drug interactions in Mycobacterium tuberculosis. Science Advances, 3 (10). ISSN 2375-2548

Mason, D. J. and Stott, I. and Ashenden, S. and Weinstein, Z. B. and Karakoç, İdil and Meral, Selin and Kuru, Nurdan and Bender, A. and Çokol, Murat (2017) Prediction of antibiotic interactions using descriptors derived from molecular structure. Journal of Medicinal Chemistry, 60 (9). pp. 3902-3912. ISSN 0022-2623 (Print) 1520-4804 (Online)

Seashore-Ludlow, Brinton and Rees, Matthew G. and Cheah, Jaime H. and Çokol, Murat and Price, Edmund V. and Coletti, Matthew E. and Jones, Victor and Bodycombe, Nicole E. and Soule, Christian K. and Gould, Joshua and Alexander, Benjamin and Li, Ava and Montgomery, Philip and Wawer, Mathias J. and Kuru, Nurdan and Kotz, Joanne D. and Hon, C. Suk-Yee and Munoz, Benito and Liefeld, Ted and Dancik, Vlado and Bittker, Joshua A. and Palmer, Michelle and Bradner, James E. and Shamji, Alykhan F. and Clemons, Paul A. and Schreiber, Stuart L. (2015) Harnessing connectivity in a large-scale small-molecule sensitivity dataset. Cancer Discovery, 5 (11). pp. 1210-1223. ISSN 2159-8274 (Print) 2159-8290 (Online)

Papers in Conference Proceedings

Weinstein, Zohar and Kuru, Nurdan and Clemons, Paul and Roth, Frederick and Çokol, Murat (2015) Synergy and selectivity of antifungal small molecule combinations. In: FASEB Microbiology Meeting,

Thesis

Kuru, Nurdan (2019) Novel gradient-based methods for data distribution and privacy in data science. [Thesis]