Items where Author is "Erman, Batu"

Article

Piepoli, Sofia and Barakat, Sarah Mohammed Mohammed and Noğay, Liyne and Şimşek, Büşra and Akköse, Ümit and Taşkıran, Hakan and Tolay, Nazife and Gezen, Melike and Yeşilada, Canberk Yarkın and Tuncay, Mustafa and Adebali, Ogün and Atılgan, Canan and Erman, Batu (2022) Sibling rivalry among the ZBTB transcription factor family: homodimers versus heterodimers. Life Science Alliance, 5 (11). ISSN 2575-1077

Somuncu, Berna and Ekmekcioglu, Aysegul and Antmen, Fatma Merve and Ertuzun, Tugce and Deniz, Emre and Keskin, Nazlı and Park, Joon and Yazici, Ilgu Ece and Şimşek, Büşra and Erman, Batu and Yin, Whitney and Erman, Burak and Muftuoglu, Meltem (2022) Targeting mitochondrial DNA polymerase gamma for selective inhibition of MLH1 deficient colon cancer growth. PLoS One, 17 (6). ISSN 1932-6203 (Print) 1932-6203 (Online)

Barakat, Sarah Mohammed Mohammed and Berksöz, Melike and Zahedimaram, Pegah and Piepoli, Sofia and Erman, Batu (2022) Nanobodies as molecular imaging probes. Free Radical Biology and Medicine, 182 . pp. 260-275. ISSN 0891-5849 (Print) 1873-4596 (Online)

Hacisuleyman, Aysima and Erkip, Albert and Erman, Batu and Erman, Burak (2021) Synchronous and asynchronous response in dynamically perturbed proteins. Journal of Physical Chemistry B, 125 (3). pp. 729-739. ISSN 1520-6106 (Print) 1520-5207 (Online)

Piepoli, Sofia and Shamloo, Bahar and Bircan, Aylin and Adebali, Ogün and Erman, Batu (2020) Molecular biology of sars-cov-2 [Sars-cov-2'nin moleküler biyolojisi]. Turkish Journal of Immunology, 8 (2). pp. 73-88. ISSN 1301-109X

Piepoli, Sofia and Alt, Aaron Oliver and Atılgan, Canan and Mancini, Erika Jazmin and Erman, Batu (2020) Structural analysis of the PATZ1 BTB domain homodimer. Acta Crystallographica Section D: Structural Biology, 76 . pp. 581-593. ISSN 2059-7983

Kırımtay, Koray and Selçuk, Ece and Kelle, Dolunay and Erman, Batu and Karabay, Arzu (2020) p53 regulates katanin-p60 promoter in HCT 116 cells. Gene, 727 . ISSN 0378-1119 (Print) 1879-0038 (Online)

Naba, Noel Mopouguini and Tolay, Nazife and Erman, Batu and Sayi Yazgan, Ayca (2020) Doxorubicin inhibits miR-140 expression and upregulates PD-L1 expression in HCT116 cells, opposite to its effects on MDA-MB-231 cells. Turkish Journal of Biology, 44 (1). pp. 15-23. ISSN 1300-0152 (Print) 1303-6092 (Online)

Ozyerli-Goknar, Ezgi and Sur-Erdem, Ilknur and Seker, Fidan and Cingöz, Ahmet and Kayabolen, Alisan and Kahya-Yesil, Zeynep and Uyulur, Fırat and Gezen, Melike and Tolay, Nazife and Erman, Batu and Gönen, Mehmet and Dunford, James and Oppermann, Udo and Bagci-Onder, Tugba (2019) The fungal metabolite chaetocin is a sensitizer for pro-apoptotic therapies in glioblastoma. Cell Death and Disease, 10 . ISSN 2041-4889

Bonjoch, Laia and Mur, Pilar and Arnau-Collell, Coral and Vargas-Parra, Gardenia and Shamloo, Bahar and Franch-Expósito, Sebastià and Pineda, Marta and Capellà, Gabriel and Erman, Batu and Castellví-Bel, Sergi (2019) Approaches to functionally validate candidate genetic variants involved in colorectal cancer predisposition. Molecular Aspects of Medicine, 69 . pp. 27-40. ISSN 0098-2997 (Print) 1872-9452 (Online)

Parlar, Ayhan and Sayitoğlu, Ece Canan and Özkazanç Ünsal, Didem and Georgoudaki, Anna-Maria and Pamukcu, Cevriye and Aras, Mertkaya and Josey, Benjamin J. and Chrobok, Michael and Branecki, Suzanne and Zahedimaram, Pegah and Ikromzoda, Lolai and Alıcı, Evren and Erman, Batu and Duru, Adil D. and Sütlü, Tolga (2019) Engineering antigen‐specific NK cell lines against the melanoma‐associated antigen tyrosinase via TCR gene transfer. European Journal of Immunology, 49 (8). pp. 1278-1290. ISSN 0014-2980 (Print) 1521-4141 (Online)

Nadernezhad, Ali and Çalışkan, Özüm Şehnaz and Topuz, Fuat and Afghah, Seyedeh Ferdows and Erman, Batu and Koç, Bahattin (2019) Nanocomposite bioinks based on agarose and 2D nanosilicates with tunable flow properties and bioactivity for 3D bioprinting. ACS Applied Bio Materials, 2 (2). pp. 796-806. ISSN 2576-6422

Deniz, Emre and Erman, Batu (2017) Long noncoding RNA (lincRNA), a new paradigm in gene expression control. Functional & Integrative Genomics, 17 (2-3). pp. 135-143. ISSN 1438-793X (Print) 1438-7948 (Online)

Atasever-Arslan, Belkıs and Yılancıoğlu, Kaan and Kalkan, Zeynep and Timuçin, Ahmet Can and Gür, Hazal and Işık, Fatma Büşra and Deniz, Emre and Erman, Batu and Çetiner, Selim (2016) Screening of new antileukemic agents from essential oils of algae extracts and computational modeling of their interactions with intracellular signaling nodes. European Journal of Pharmaceutical Sciences, 83 . pp. 120-131. ISSN 0928-0987 (Print) 1879-0720 (Online)

Keskin, Nazlı and Deniz, Emre and Eryılmaz, Jitka and Ün, Manolya and Altınuşak, Tuğçe and Erşahin, Tülin and Atalay, Rengül Çetin and Sakaguchi, Shinya and Ellmeier, Wilfried and Erman, Batu (2015) PATZ1 is a DNA damage-responsive transcription factor that inhibits p53 function. Molecular and Cellular Biology, 35 (10). pp. 1741-1753. ISSN 0270-7306 (Print) 1098-5549 (Online)

Yılancıoğlu, Kaan and Çokol, Murat and Pastırmacı, İnanç and Erman, Batu and Çetiner, Selim (2014) Oxidative stress is a mediator for increased lipid accumulation in a newly isolated Dunaliella salina strain. PLoS One, 9 (3). ISSN 1932-6203 (Print) 1932-6203 (Online)

Tai, Xuguang and Erman, Batu and Alag, Amala and Mu, Jie and Kimura, Motoko and Katz, Gil and Guinter, Terry and McCaughtry, Tom and Etzensperger, Ruth and Feigenbaum, Lionel and Singer, Dinah S. and Singer, Alfred (2013) Foxp3 transcription factor is proapoptotic and lethal to developing regulatory T cells unless counterbalanced by cytokine survival signals. Immunity, 38 (6). pp. 1116-1128. ISSN 1074-7613 (Print) 1097-4180 (Online)

Atasever Arslan, Belkıs and Erdem-Kuruca, Serap and Karakaş, Zeynep and Erman, Batu and Ergen, Arzu (2013) Effects of micro environmental factors on natural killer activity (NK) of beta thalassemia major patients. Cell Immunology, 282 (2). pp. 93-99. ISSN 0008-8749 (Print) 1090-2163 (Online)

Çevik, Şafak Işıl and Keskin, Nazlı and Belkaya, Serkan and Özlü, Meral İlçim and Deniz, Emre and Tazebay, Uygar Halis and Erman, Batu (2012) CD81 interacts with the T cell receptor to suppress signaling. PLoS One, 7 (11). ISSN 1932-6203

Adoro, Stanley and McCaughtry, Thomas and Erman, Batu and Alag, Amala and Van Laethem, François and Park, Jung-Hyun and Tai, Xuguang and Kimura, Motoko and Wang, Lie and Grinberg, Alex and Kubo, Masato and Bosselut, Remy and Love, Paul and Singer, Alfred (2012) Coreceptor gene imprinting governs thymocyte lineage fate. The EMBO Journal, 31 (2). pp. 366-377. ISSN 0261-4189 (print) ; 1460-2075 (online)

Erman, Batu (2009) Signaling by intrathymic cytokines, not T cell receptors, specifies CD8- lineage choice and promotes differentiation of cytotoxic-lineage T cells. (Accepted)

Guimond, Martin and Veenstra, Rachelle G. and Grindler, David J. and Zhang, Hua and Cui, Yongzhi and Murphy, Ryan D. and Kim, Su Young and Na, Risu and Hennighausen, Lothar and Kurtuluş, Sema and Erman, Batu and Matzinger, Polly and Merchant, Melinda S. and Mackall, Crystal L. (2009) Interleukin 7 signaling in dendritic cells regulates the homeostatic roliferation and niche size of CD4(+) T cells. Nature Immunology, 10 (2). pp. 149-157. ISSN 1529-2908

Adoro, Stanley and Erman, Batu and Sarafova, Sophia D. and Van Laethem, François and Park, Jung-Hyun and Feigenbaum, Lionel and Singer, Alfred (2008) Targeting CD4 coreceptor expression to postselection thymocytes reveals that CD4/CD8 lineage choice is neither error-prone nor stochastic. Journal of Immunology, 181 (10). pp. 6975-6983. ISSN 0022-1767 (Print) 1550-6606 (Online)

Park, Jung-Hyun and Adoro, Stanley and Lucas, Philip J. and Sarafova, Sophia D. and Alag, Amala S. and Doan, Loretta L. and Erman, Batu and Liu, Xiaolong and Ellmeier, Wilfried and Bosselut, Remy and Feigenbaum, Lionel and Singer, Alfred (2007) 'Coreceptor tuning': cytokine signals transcriptionally tailor CD8 coreceptor expression to the self-specificity of the TCR. Nature immunology, 8 (10). 1049 -1059. ISSN 1529-2908

Erman, Batu and Alag, Amala S. and Dahle, Oyvind and Laethem, François van and Sarafova, Sophia D. and Guinter, Terry I. and Sharrow, Susan O. and Grinberg, Alexander and Love, Paul E. and Singer, Alfred (2006) Coreceptor signal strength regulates positive selection but does not determine CD4/CD8 lineage choice in a physiologic in vivo model. Journal of Immunology, 177 (10). pp. 6613-6625. ISSN 0022-1767

Yu, Qing and Park, Jung-Hyun and Doan, Loretta L. and Erman, Batu and Feigenbaum, Lionel and Singer, Alfred (2006) Cytokine signal transduction is suppressed in preselection double-positive thymocytes and restored by positive selection. Journal of experimental medicine, 203 (1). pp. 165-175. ISSN 0022-1007

Sarafova, Sophia D. and Erman, Batu and Yu, Qing and Van Laethem, François and Guinter, Terry and Sharrow, Susan O. and Feigenbaum, Lionel and Wildt, Kathryn F. and Ellmeier, Wilfried and Singer, Alfred (2005) Modulation of coreceptor transcription during positive selection dictates lineage fate independently of TCR/coreceptor specificity. Immunity, 23 (1). pp. 75-87. ISSN 1074-7613

Papers in Conference Proceedings

Parlar, Ayhan and Pamukcu, Cevriye and Özkazanç, Didem and Aras, Mertkaya and Dahlberg, C. and Chrobok, M. and Zahedimaram, Pegah and Ikromzoda, Lolai and Sayıtoğlu, E. C. and Alıcı, E. and Erman, Batu and Duru, A. D. and Sütlü, Tolga (2017) Engineering antigen-specific NK cells via TCR gene transfer: a novel source for adoptive immunotherapy. In: European-Society-of-Gene-and-Cell-Therapy (ESCGT) Congress, Berlin, Germany

Karakas, Z. and Atasever, Belkıs and Kuruca, S. Erdem and Erman, Batu and Ergen, A. and Isbir, T. and Ağaoğlu, L. (2009) Natural killer activity and effect of IL-2 in patients with beta-thalassemia major. In: 14th Annual Meeting of the European-Hematology-Association, Berlin, Germany

Atasever, Belkıs and Kuruca, S. Erdem and Karakas, Z. and Erman, Batu and Ergen, A. and Isbir, T. and Günal, G. (2009) Phenotypic and functional studies of natural killer (NK) cell subsets in beta-thalassemia major patients. In: 14th Annual Meeting of the European-Hematology-Association, Berlin, Germany

Book Section / Chapter

Shamloo, Bahar and Erman, Batu (2014) Immune receptors and signal transduction: T and B cell receptors (Immun reseptorler ve sinyal iletimi: T ve B hucre reseptorleri). In: Abacıoğlu, Hakan and Öngen, Betigül and Badur, Selim, (eds.) Infection Pathogenesis and Immunity (Enfeksiyon Patogenezi ve Bağışıklık). Istanbul, Istanbul. (Accepted)

Dataset

Erman, Batu and Piepoli, Sofia and Mancini, Erika and Alt, Aaron (2018) (1 July 2018) BTB domain of mouse PATZ1. [Dataset]

Erman, Batu and Piepoli, Sofia and Mancini, Erika and Alt, Aaron (2018) (1 July 2018) Structure of the BTB domain of zebrafish PATZ1. [Dataset]