Ross, Caroline and Nizami, Bilal and Glenister, Michael and Amamuddy, Olivier Sheik and Atılgan, Ali Rana and Atılgan, Canan and Bishop, Özlem Tastan (2018) MODE-TASK: large-scale protein motion tools. Bioinformatics, 34 (21). pp. 3759-3763. ISSN 1367-4803 (Print) 1460-2059 (Online)
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Official URL: https://dx.doi.org/10.1093/bioinformatics/bty427
Abstract
MODE-TASK, a novel and versatile software suite, comprises Principal Component Analysis, Multidimensional Scaling, and t-Distributed Stochastic Neighbor Embedding techniques using Molecular Dynamics trajectories. MODE-TASK also includes a Normal Mode Analysis tool based on Anisotropic Network Model so as to provide a variety of ways to analyse and compare large-scale motions of protein complexes for which long MD simulations are prohibitive. Beside the command line function, a GUI has been developed as a PyMOL plugin.
| Item Type: | Article |
|---|---|
| Divisions: | Faculty of Engineering and Natural Sciences |
| Depositing User: | Ali Rana Atılgan |
| Date Deposited: | 31 Jul 2023 11:16 |
| Last Modified: | 31 Jul 2023 11:16 |
| URI: | https://research.sabanciuniv.edu/id/eprint/46603 |
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MODE-TASK: large-scale protein motion tools. (deposited 15 Aug 2018 16:03)
- MODE-TASK: large-scale protein motion tools. (deposited 31 Jul 2023 11:16) [Currently Displayed]
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