MODE-TASK: large-scale protein motion tools

Ross, Caroline Jane and Nizami, Bilal and Glenister, Michael and Amamuddy, Olivier Sheik and Atılgan, Ali Rana and Atılgan, Canan and Bishop, Özlem Taştan (2018) MODE-TASK: large-scale protein motion tools. Bioinformatics . ISSN 1367-4803 (Print) 1460-2059 (Online) Published Online First http://dx.doi.org/10.1093/bioinformatics/bty427

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Abstract

MODE-TASK, a novel and versatile software suite, comprises Principal Component Analysis, Multidimensional Scaling, and t-Distributed Stochastic Neighbor Embedding techniques using Molecular Dynamics trajectories. MODE-TASK also includes a Normal Mode Analysis tool based on Anisotropic Network Model so as to provide a variety of ways to analyse and compare large-scale motions of protein complexes for which long MD simulations are prohibitive. Beside the command line function, a GUI has been developed as a PyMOL plugin.
Item Type: Article
Subjects: Q Science > Q Science (General)
Divisions: Faculty of Engineering and Natural Sciences > Academic programs > Industrial Engineering
Faculty of Engineering and Natural Sciences > Academic programs > Materials Science & Eng.
Faculty of Engineering and Natural Sciences
Depositing User: Ali Rana Atılgan
Date Deposited: 15 Aug 2018 16:03
Last Modified: 26 Apr 2022 09:56
URI: https://research.sabanciuniv.edu/id/eprint/35402

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