Items where Division is "Biological Sciences & Bio Eng." and Year is 2009

Article

Cebeci Yalçınkaya, Özge and Budak, Hikmet (2009) Global expression patterns of three festuca species exposed to different doses of glyphosate using the affymetrix geneChip wheat genome array. Comparative and Functional Genomics, 2009 . ISSN 1531-6912

Çakıcı, Serdar and Sümengen, Selçuk and Sezerman, Uğur and Balcısoy, Selim (2009) DockPro: a vr-based tool for protein-protein docking problem. International Journal of Virtual Reality, 8 (2). pp. 19-23.

Çakmak, İsmail (2009) Enrichment of fertilizers with zinc: an excellent investment for humanity and crop production in India. Journal of Trace Elements in Medicine and Biology, 23 (4). pp. 281-289. ISSN 0946-672X

Çakmak, İsmail and Pfeiffer, Wolfgang H. and McClafferty, Bonnie (2009) Biofortification of durum wheat with zinc and iron. (Accepted)

Çakmak, İsmail and Yazıcı, M. Atilla and Tutuş, Yusuf and Öztürk, Levent (2009) Glyphosate reduced seed and leaf concentrations of calcium, manganese, magnesium, and iron in non-glyphosate resistant soybean. European Journal of Agronomy, 31 (3 Sp. ). pp. 114-119. ISSN 1161-0301

Ergen, Zahide Neslihan and Budak, Hikmet (2009) Sequencing over 13 000 expressed sequence tags from six subtractive cDNA libraries of wild and modern wheats following slow drought stress. Plant Cell and Environment, 32 (3). pp. 220-236. ISSN 0140-7791

Erman, Batu (2009) Signaling by intrathymic cytokines, not T cell receptors, specifies CD8- lineage choice and promotes differentiation of cytotoxic-lineage T cells. (Accepted)

Filiz, E. and Özdemir, B. S. and Budak, F. and Vogel, J. P. and Tuna, M. and Budak, Hikmet (2009) Molecular, morphological, and cytological analysis of diverse Brachypodium distachyon inbred lines. Genome, 52 (10). pp. 876-890. ISSN 0831-2796

Hernlund, Emma and Kütük, Özgür and Başağa, Hüveyda and Linder, Stig and Panaretakis, Theocharis and Shoshan, Maria (2009) Cisplatin-induced nitrosylation of p53 prevents its mitochondrial translocation. Free Radical Biology and Medicine, 46 (12). pp. 1607-1613. ISSN 0891-5849

Kütük, Özgür and Arısan, Elif Damla and Tezil, Tuğsan and Shoshan, Maria C. and Başağa, Hüveyda (2009) Cisplatin overcomes Bcl-2-mediated resistance to apoptosis via preferential engagement of Bak: critical role of Noxa-mediated lipid peroxidation. Carcinogenesis, 30 (9). pp. 1517-1527. ISSN 0143-3334

Mendi, Yalçın Y. and Curuk, P. and Kocaman, E. and Unek, C. and Eldoğan, S. and Gencel, G. and Çetiner, Selim (2009) Regeneration of begonia plantlets by direct organogenesis. African Journal Of Biotechnology, 8 (9). pp. 1860-1863. ISSN 1684-5315

Mitou, Geraldine and Budak, Hikmet and Gözüaçık, Devrim (2009) Techniques to study autophagy in plants. International Journal of Plant Genomics, 2009 . pp. 1-14. ISSN 1687-5370

Peleg, Zvi and Çakmak, İsmail and Öztürk, Levent and Yazıcı, M. Atilla and Jun, Yan and Budak, Hikmet and Korol, Abraham B. and Fahima, Tzion and Saranga, Yehoshua (2009) Quantitative trait loci conferring grain mineral nutrient concentrations in durum wheat 3 wild emmer wheat RIL population. Theoretical and Applied Genetics, 119 (2). pp. 353-369. ISSN 0040-5752

Solda, Giulia and Makunin, Igor V. and Sezerman, Uğur and Corradin, Alberto and Corti, Giorgio and Guffanti, Alessandro (2009) An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes. Briefings in Bioinformatics, 10 (5). pp. 475-489. ISSN 1467-5463

Su, Y. Senem and Öztürk, Levent and Çakmak, İsmail and Budak, Hikmet (2009) Turfgrass species response exposed to increasing rates of glyphosate application. European Journal of Agronomy, 31 (3 Sp. ). pp. 120-125. ISSN 1161-0301

Telci, Dilek and Collighan, Russell John and Başağa, Hüveyda and Griffin, Martin (2009) Increased TG2 expression can result in induction of transforming growth factor beta 1, causing increased synthesis and deposition of matrix proteins, which can be regulated by nitric oxide. Journal of Biological Chemistry, 284 (43). pp. 29547-29558. ISSN 0021-9258

Tesfamariam, Tsehaye and Bott, S. and Çakmak, İsmail and Roemheld, V. and Neumann, G. (2009) Glyphosate in the rhizosphere-role of waiting times and different glyphosate binding forms in soils for phytotoxicity to non-target plants. European Journal of Agronomy, 31 (3). pp. 126-132. ISSN 1161-0301

Unver, Turgay and Namuth-Covert, Deena M. and Budak, Hikmet (2009) Review of current methodological approaches for characterizing microRNAs in plants. International Journal of Plant Genomics, 2009 . ISSN 1687-5370

Ünver, Turgay and Budak, Hikmet (2009) Conserved microRNAs and their targets in model grass species Brachypodium distachyon. Planta, 230 (4). pp. 659-669. ISSN 0032-0935 (Print) 1432-2048 (Online)

Vogel, John P. and Tuna, Metin and Budak, Hikmet and Huo, Naxin and Gu, Yong Q. and Steinwand, Michael A. (2009) Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon. BMC Plant Biology, 9 . ISSN 1471-2229

Yeniterzi, Süveyda and Sezerman, Uğur (2009) Enzyminer: automatic identification of protein level mutations and their impact on target enzymes from PubMed abstracts. BMC Bioinformatics, 10 (Supple). ISSN 1471-2105

Papers in Conference Proceedings

Ahn, Joo-Myung and Hwang, Ee Taek and Kim, Byoung Chan and Kolkar Mohammed, Javed Hussain Niazi and Gu, Man Bock (2009) Prediction and classification of the modes of genotoxic actions using bacterial biosensors and cell array chip. In: Asia Pacific Biochemical Engineering Conference (APBioChEC'09), Kobe, Japan

Aksoy, S. and Hekimbaşı, T. and Eyidoğan, F. and Öktem, H. and Budak, Hikmet (2009) Application of fiber-fish methods for transgene analysis in transgenic plants. In: 7th European Cytogenetics Conference, Stockholm, Sweden

Aktürk, Anıl and Yeşilırmak, Filiz and Sayers, Zehra (2009) Investigation of structural features of mutant Metallothioneins I: Hingeless T. durum metallothionein (Mutant metallotionin proteininin yapısal özellikleri: köprüsüz T. durum metallotionini). In: 14th Biomedical Engineering Conference (BIYOMUT 2009), Izmir, Turkey

Apaydın, Serkan Mehmet and Çatay, Bülent and Patrick, Nicholas and Donald, Bruce R. (2009) NVR-BIP: nuclear vector replacement using binary integer programming for NMR structure-based assignments. In: 24th International Symposium on Computer and Information Sciences (ISCIS09), North Cyprus

Atasever, Belkıs and Kuruca, S. Erdem and Karakas, Z. and Erman, Batu and Ergen, A. and Isbir, T. and Günal, G. (2009) Phenotypic and functional studies of natural killer (NK) cell subsets in beta-thalassemia major patients. In: 14th Annual Meeting of the European-Hematology-Association, Berlin, Germany

Bakış, Yasin and Sezerman, Uğur and Babaç, M. Tekin and Meydan, Cem (2009) Optimization of morphological data in numerical taxonomy analysis using genetic algorithms feature selection method. In: 11th Genetic and Evolutionary Computation Conference, GECCO 2009, Montreal, Québec, Canada

Bodur, Çağrı and Kütük, O. and Poli, G. and Başağa, Hüveyda (2009) Role of Bcl-2 family members in 4-hydroxynonenal (HNE) mediated apoptosis. In: Annual Meeting of the Society-for-Free-Radicals-Research-Europe, Rome, Italy

Bodur, Çağrı and Kütük, Özgür and Poli, G. and Başağa, Hüveyda (2009) Role of Bcl-2 protein family members in 4-hydroxynonenal mediated apoptosis. In: Europe Meeting 2009 of the Society-for-Free-Radicals-Research, Rome, Italy

Çakmak, İsmail (2009) Biofortification of cereal grains with zinc through fertilizer strategy. In: 19th International Congress of Nutrition, Bangkok, Thailand

Filiz, Ertuğrul and Özdemir, Bahar Soğutmaz and Tuna, Metin and Budak, Hikmet (2009) Diploid brachypodium distachyon of Turkey: molecular and morphological analysis. In: 5th International Molecular Breeding of Forage and Turf, Sapporo, Japan

Karakas, Z. and Atasever, Belkıs and Kuruca, S. Erdem and Erman, Batu and Ergen, A. and Isbir, T. and Ağaoğlu, L. (2009) Natural killer activity and effect of IL-2 in patients with beta-thalassemia major. In: 14th Annual Meeting of the European-Hematology-Association, Berlin, Germany

Meydan, Cem and Otu, Hasan and Sezerman, Uğur (2009) Prediction of peptides binding to MHC class I alleles by partial periodic pattern mining. In: 4th International Symposium on Health Informatics and Bioinformatics (HIBIT 09), Ankara, Türkiye

Meydan, Cem and Sezerman, Uğur and Otu, Hasan (2009) Prediction of peptides binding to MHC class I alleles by partial periodic pattern mining. In: International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, 2009 (IJCBS '09), Shangai, China

Saygı, Ceren and Aydın, Mert and Yeşilırmak, Filiz and Sayers, Zehra (2009) Investigation of structural features of mutant metallothioneins: modifications in cysteine motifs of T. durum metallothionein (Mutant metallotionin’lerin yapısal özelliklerinin incelenmesi: T. durum metallotionin’in sistin motiflerinin modifikasyonu). In: 14th Biomedical Engineering Conference (BIYOMUT 2009), Izmir, Turkey

Yeşilırmak, Filiz and Sayers, Zehra (2009) Biophysical characterization of a recombinant metallothionein and its possible use as a biosensor (Rekombinant metallotioninler’in biyofiziksel karakterizasyonu ve biyosensor olarak kullanılabilirliği). In: 14th Biomedical Engineering Conference (BIYOMUT 2009), Izmir, Turkey

Yörükoğlu, Deniz and Bakış, Yasin and Sezerman, Uğur (2009) An entropy based heuristic model for predicting functional sub-type divisions of protein families. In: 11th Genetic and Evolutionary Computation Conference, GECCO 2009, Montreal, Québec, Canada

Book Section / Chapter

Kütük, Özgür and Başağa, Hüveyda (2009) Apoptotic pathways in mitochondria. In: Preedy, Victor R., (ed.) Modern Insights Into Disease From Molecules to Man. UNSPECIFIED, USA. (Accepted)

Volumes Edited / Special Issues

Budak, Hikmet (2009) Wet lab tools widely used in plant genomics. [Volumes Edited / Special Issues]

Thesis

Arısan, Elif Damla (2009) Molecular mechanism of drug induced apoptosis and chemoresistance in estrogen receptor alpha +/- breast cancer cell lines: mcf-7 and mda-mb-231. [Thesis]

Ateş, Yıldız Özlem (2009) Effect of reactive oxygen species in cisplatin-induced apoptotic response of hct 116 colon carcinoma cells. [Thesis]

Belkaya, Serkan (2009) Identification of the interacting protein partners of the ThPOK transcription factor. [Thesis]

Günal, Gamze (2009) Molecular biological investigation of interleukin-7 receptor gene expression in t lymphocytes. [Thesis]

Kaplan Türköz, Burcu (2009) Structural investigation of g-protein signaling in plants. [Thesis]

Kısaayak Çollak, Filiz (2009) Cloning expression and purification of durum wheat metallothionein domains and structural modelling. [Thesis]

Kmail, Abdalsalam Omer Mohammed (2009) Nuclear translocation of nfat family proteins in human reporter cell lines. [Thesis]

Liv, Nalan (2009) An implementation of functionalized carbon nanotubes on optical biosensors. [Thesis]

Özlü, Meral İlçim (2009) Identification of the interacting partners of CD3 delta. [Thesis]

Öztolan, Nihal (2009) Determination of antioxidant capacity of selenium-enriched wheat seeds. [Thesis]

Soğutmaz Özdemir, Bahar (2009) Application of biotechnological tools to model plant: brachypodium distachyon. [Thesis]