Items where Author is "Çokol, Murat"

Article

Çokol Çakmak, Melike and Çetiner, Selim and Erdem, Nurdan and Bakan, Feray and Çokol, Murat (2020) Guided screen for synergistic three-drug combinations. PLoS One, 15 (7). ISSN 1932-6203

Sokolov, Artem and Ashenden, Stephanie and Şahin, Nil and Lewis, Richard and Erdem, Nurdan and Ozaltan, Elif and Bender, Andreas and Roth, Frederick P. and Çokol, Murat (2019) Characterizing ABC-transporter substrate-likeness using a clean-slate genetic background. Frontiers in Pharmacology, 10 . ISSN 1663-9812

Çokol, Murat and Li, Chen and Chandrasekaran, Sriram (2018) Chemogenomic model identifies synergistic drug combinations robust to the pathogen microenvironment. PLoS Computational Biology, 14 (12). ISSN 1553-734X (Print) 1553-7358 (Online)

Weinstein, Zohar B. and Kuru, Nurdan and Kiriakov, Szilvia and Palmer, Adam C. and Khalil, Ahmad S. and Clemons, Paul A. and Zaman, Muhammad H. and Roth, Frederick P. and Çokol, Murat (2018) Modeling the impact of drug interactions on therapeutic selectivity. Nature Communications, 9 . ISSN 2041-1723

Çokol-Çakmak, Melike and Bakan, Feray and Çetiner, Selim and Çokol, Murat (2018) Diagonal method to measure synergy among any number of drugs. Journal of Visualized Experiments (JoVE), 2018 (136). ISSN 1940-087X

Çokol, Murat and Kuru, Nurdan and Bıçak, Ece and Larkins-Ford, Jonah and Aldridge, Bree B. (2017) Efficient measurement and factorization of high-order drug interactions in Mycobacterium tuberculosis. Science Advances, 3 (10). ISSN 2375-2548

Bakan, Feray and Kara, Göknur and Çokol Çakmak, Melike and Çokol, Murat and Denkbaş, Emir Baki (2017) Synthesis and characterization of amino acid-functionalized calcium phosphate nanoparticles for siRNA delivery. Colloids and Surfaces B: Biointerfaces, 158 . pp. 175-181. ISSN 0927-7765 (Print) 1873-4367 (Online) Published Online First http://dx.doi.org/10.1016/j.colsurfb.2017.06.028

Mason, D. J. and Stott, I. and Ashenden, S. and Weinstein, Z. B. and Karakoç, İdil and Meral, Selin and Kuru, Nurdan and Bender, A. and Çokol, Murat (2017) Prediction of antibiotic interactions using descriptors derived from molecular structure. Journal of Medicinal Chemistry, 60 (9). pp. 3902-3912. ISSN 0022-2623 (Print) 1520-4804 (Online)

Richardson, Kirill and Bennion, Owen T. and Tan, Shumin and Hoang, Anh N. and Çokol, Murat and Aldridge, Bree B. (2016) Temporal and intrinsic factors of rifampicin tolerance in mycobacteria. Proceedings of the National Academy of Sciences of the United States of America, 113 (29). pp. 8302-8307. ISSN 0027-8424

Chandrasekaran, Sriram and Çokol Çakmak, Melike and Şahin, Nil and Yılancıoğlu, Kaan and Kazan, Hilal and Collins, James J. and Çokol, Murat (2016) Chemogenomics and orthology-based design of antibiotic combination therapies. Molecular Systems Biology, 12 (5). ISSN 1744-4292

Seashore-Ludlow, Brinton and Rees, Matthew G. and Cheah, Jaime H. and Çokol, Murat and Price, Edmund V. and Coletti, Matthew E. and Jones, Victor and Bodycombe, Nicole E. and Soule, Christian K. and Gould, Joshua and Alexander, Benjamin and Li, Ava and Montgomery, Philip and Wawer, Mathias J. and Kuru, Nurdan and Kotz, Joanne D. and Hon, C. Suk-Yee and Munoz, Benito and Liefeld, Ted and Dancik, Vlado and Bittker, Joshua A. and Palmer, Michelle and Bradner, James E. and Shamji, Alykhan F. and Clemons, Paul A. and Schreiber, Stuart L. (2015) Harnessing connectivity in a large-scale small-molecule sensitivity dataset. Cancer Discovery, 5 (11). pp. 1210-1223. ISSN 2159-8274 (Print) 2159-8290 (Online)

Bulusu, Krishna C. and Guha, Rajarshi and Mason, Daniel J. and Lewis, Richard P. I. and Muratov, Eugene and Motamedi, Yasaman Kalantar and Çokol, Murat and Bender, Andreas (2015) Modelling of compound combination effects and applications to efficacy and toxicity: state-of-the-art, challenges and perspectives. Drug Discovery Today . ISSN 1359-6446 (Print) 1878-5832 (Online) Published Online First http://dx.doi.org/10.1016/j.drudis.2015.09.003

Öz, Tuğçe and Güvenek, Ayşegül and Yıldız, Sadık and Karaboğa, Enes and Tamer, Yusuf Talha and Mumcuyan, Nirva and Ozan, Vedat Burak and Şentürk, Gizem Hazal and Çokol, Murat and Yeh, Pamela and Toprak, Erdal (2014) Strength of selection pressure is an important parameter contributing to the complexity of antibiotic resistance evolution. Molecular Biology and Evolution, 31 (9). pp. 2387-2401. ISSN 0737-4038 (Print) 1537-1719 (Online)

Yılancıoğlu, Kaan and Weinstein, Zohar Bat-El and Meydan, Cem and Akhmetov, Azat and Toprak, Işıl and Durmaz, Arda and Iossifov, Ivan and Kazan, Hilal and Roth, Frederick P. and Çokol, Murat (2014) Target-independent prediction of drug synergies using only drug lipophilicity. Journal of Chemical Information and Modeling, 54 (8). pp. 2286-2293. ISSN 1549-9596 (Print) 1549-960X (Online)

Çokol, Murat and Weinstein, Zohar Bat-El and Yılancıoğlu, Kaan and Tasan, Murat and Doak, Allison and Cansever, Dilay and Mutlu, Beste and Li, Siyang and Rodriguez-Esteban, Raul and Akhmedov, Murodzhon and Güvenek, Ayşegül and Çokol Çakmak, Melike and Çetiner, Selim and Giaever, Guri and Iossifov, Ivan and Nislow, Corey and Shoichet, Brian and Roth, Frederick P. (2014) Large-scale identification and analysis of suppressive drug interactions. Chemistry and Biology, 21 (4). pp. 541-551. ISSN 1074-5521 (Print) 1879-1301 (Online)

Karabulut, Nermin Pinar and Akhmedov, Murodzhon and Çokol, Murat (2014) A drug similarity network for understanding drug mechanism of action. Journal of Bioinformatics and Computational Biology, 12 (2). ISSN 0219-7200 (Print) 1757-6334 (Online)

Yılancıoğlu, Kaan and Çokol, Murat and Pastırmacı, İnanç and Erman, Batu and Çetiner, Selim (2014) Oxidative stress is a mediator for increased lipid accumulation in a newly isolated Dunaliella salina strain. PLoS One, 9 (3). ISSN 1932-6203 (Print) 1932-6203 (Online)

Ceyhan, Ceran and Çokol, Murat and Cingöz, Sultan and Taşan, İpek and Öztürk, Mehmet and Yağcı, Tamer (2012) Novel anti-HER2 monoclonal antibodies: synergy and antagonism with tumor necrosis factor alpha. BMC Cancer, 12 . ISSN 1471-2407 (Print) 1471-2407 (Online)

Çokol, Murat and Chua, Hon Nian and Taşan, Murat and Mutlu, Beste and Weinstein, Zohar Bat-El and Suzuki, Yo and Nergiz, Mehmet E. and Costanzo, Michael and Baryshnikova, Anastasia and Giaever, Guri and Nislow, Corey and Myers, Chad L. and Andrews, Brenda J. and Boone, Charles and Roth, Frederick P. (2011) Systematic exploration of synergistic drug pairs. Molecular Systems Biology, 7 . ISSN 1744-4292

Papers in Conference Proceedings

Weinstein, Zohar and Kuru, Nurdan and Clemons, Paul and Roth, Frederick and Çokol, Murat (2015) Synergy and selectivity of antifungal small molecule combinations. In: FASEB Microbiology Meeting,