Keskus, Ayse Gokce and Tombaz, Melike and Arici, Burcin Irem and Dincaslan, Fatma Betul and Nabi, Afshan and Shehwana, Huma and Konu, Ozlen (2022) Functional analysis of co-expression networks of zebrafish ace2 reveals enrichment of pathways associated with development and disease. Genome, 65 (2). pp. 57-74. ISSN 0831-2796 (Print) 1480-3321 (Online)
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Official URL: https://dx.doi.org/10.1139/gen-2021-0033
Abstract
Human Angiotensin I Converting Enzyme 2 (ACE2) plays an essential role in blood pressure regulation and SARS-CoV-2 entry. ACE2 has a highly conserved, one-to-one ortholog (ace2) in zebrafish, which is an important model for human diseases. However, the zebrafish ace2 expression profile has not yet been studied during early development, between genders, across different genotypes, or in disease. Moreover, a network-based meta-analysis for the extraction of functionally enriched pathways associated with differential ace2 expression is lacking in the literature. Herein, we first identified significant development-, tissue-, genotype-, and gender-specific modulations in ace2 expression via meta-analysis of zebrafish Affymetrix transcriptomics datasets (ndatasets = 107); and the correlation analysis of ace2 meta-differential expression profile revealed distinct positively and negatively correlated local functionally enriched gene networks. Moreover, we demonstrated that ace2 expression was significantly modulated under different physiological and pathological conditions related to development, tissue, gender, diet, infection, and inflammation using additional RNA-seq datasets. Our findings implicate a novel translational role for zebrafish ace2 in organ differentiation and pathologies observed in the intestines and liver.
Item Type: | Article |
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Uncontrolled Keywords: | Ace2; Meta-analysis; Network analysis; Transcriptome; Zebrafish |
Divisions: | Faculty of Engineering and Natural Sciences |
Depositing User: | Afshan Nabi |
Date Deposited: | 25 Aug 2022 15:52 |
Last Modified: | 25 Aug 2022 15:52 |
URI: | https://research.sabanciuniv.edu/id/eprint/43992 |