Erdem, Esra and Öztok, Umut (2015) Generating explanations for biomedical queries. Theory and Practice of Logic Programming, 15 (Part: ). pp. 35-78. ISSN 1471-0684 (Print) 1475-3081 (Online)
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Official URL: http://dx.doi.org/10.1017/S1471068413000598
Abstract
We introduce novel mathematical models and algorithms to generate (shortest or k different) explanations for biomedical queries, using answer set programming. We implement these algorithms and integrate them in BioQuery-ASP. We illustrate the usefulness of these methods with some complex biomedical queries related to drug discovery, over the biomedical knowledge resources PharmGKB, DrugBank, BioGRID, CTD, SIDER, Disease Ontology, and Orphadata.
| Item Type: | Article |
|---|---|
| Uncontrolled Keywords: | answer set programming; explanation generation; query answering; biomedical queries |
| Divisions: | Faculty of Engineering and Natural Sciences > Academic programs > Computer Science & Eng. Faculty of Engineering and Natural Sciences |
| Depositing User: | Esra Erdem |
| Date Deposited: | 17 Jan 2014 11:01 |
| Last Modified: | 26 Apr 2022 09:10 |
| URI: | https://research.sabanciuniv.edu/id/eprint/23349 |
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Generating explanations for biomedical queries. (deposited 28 Nov 2012 22:06)
- Generating explanations for biomedical queries. (deposited 17 Jan 2014 11:01) [Currently Displayed]
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