Items where Author is "Erman, Burak"

Article

Erkip, Albert and Erman, Burak (2024) Dynamically driven correlations in elastic net models reveal sequence of events and causality in proteins. Proteins: Structure, Function and Bioinformatics, 92 (9). pp. 1113-1126. ISSN 0887-3585 (Print) 1097-0134 (Online)

Somuncu, Berna and Ekmekcioglu, Aysegul and Antmen, Fatma Merve and Ertuzun, Tugce and Deniz, Emre and Keskin, Nazlı and Park, Joon and Yazici, Ilgu Ece and Şimşek, Büşra and Erman, Batu and Yin, Whitney and Erman, Burak and Muftuoglu, Meltem (2022) Targeting mitochondrial DNA polymerase gamma for selective inhibition of MLH1 deficient colon cancer growth. PLoS One, 17 (6). ISSN 1932-6203 (Print) 1932-6203 (Online)

Hacisuleyman, Aysima and Erkip, Albert and Erman, Batu and Erman, Burak (2021) Synchronous and asynchronous response in dynamically perturbed proteins. Journal of Physical Chemistry B, 125 (3). pp. 729-739. ISSN 1520-6106 (Print) 1520-5207 (Online)

Konyalı, Haluk and Menceloğlu, Yusuf Z. and Erman, Burak (2009) Long-time stress relaxation of filled amorphous networks under uniaxial tension: dynamic constrained junction model. Plastics, Rubber and Composites, 38 (8). pp. 327-332. ISSN 1465-8011

Konyalı, Haluk and Menceloğlu, Yusuf Z. and Erman, Burak (2008) Long time stress relaxation of amorphous networks under uniaxial tension: The Dynamic Constrained Junction Model. Polymer, 49 (4). pp. 1056-1065. ISSN 0032-3861

Demir, Mustafa Muammer and Menceloğlu, Yusuf Z. and Erman, Burak (2006) Aggregation of fillers blended into random elastomeric networks: theory and comparison with experiments. Macromolecular chemistry and physics, 207 (16). pp. 1515-1524. ISSN 1022-1352

Demir, Mustafa Muammer and Menceloğlu, Yusuf Z. and Erman, Burak (2005) Effect of filler amount on thermoelastic properties of poly (dimethylsiloxane) networks. Polymer, 46 (12). pp. 4127-4134. ISSN 0032-3861 (Print) 1873-2291 (Online)

Demir, Mustafa Muammer and Gülgün, Mehmet Ali and Menceloğlu, Yusuf Z. and Erman, Burak and Abramchuk, Sergei S. and Makhaeva, Elena E. and Khokhlov, Alexei R. and Matveeva, Valentina G. and Sulman, Mikhail G. (2004) Palladium nanoparticles by electrospinning from poly(acrylonitrile-co-acrylic acid)-PdCl2 solutions. Relations between preparation conditions, particle size, and catalytic activity. Macromolecules, 37 (5). pp. 1787-1792. ISSN 0024-9297 (Print) 1520-5835 (Online)

Erkip, Albert and Erman, Burak (2004) Dynamics of large-scale fluctuations in native proteins. Analysis based on harmonic inter-residue potentials and random external noise. Polymer, 45 (2). pp. 641-648. ISSN 0032-3861

Kırmızıaltın, Serdal and Baysal, Canan and Erman, Burak (2003) Conformational properties of the bacterial polyester poly(3-hydroxy-5,8-decadienoate). Macromolecules, 36 (4). pp. 1132-1137. ISSN 0024-9297

Demir, Mustafa Muammer and Erman, Burak (2002) Dimensions of polystyrene particles deposited on mica from dilute cyclohexane solution at different temperatures. Macromolecules, 35 (21). pp. 7986-7992. ISSN 0024-9297 (Print) 1520-5835 (Online)

Yanıkoğlu, Berrin and Erman, Burak (2002) Minimum energy configurations of the 2-dimensional HP-model of proteins by self-organizing networks. Journal of Computational Biology, 9 (4). pp. 613-620. ISSN 1066-5277

Demir, Mustafa Muammer and Yilgor, I. and Yilgor, E. and Erman, Burak (2002) Electrospinning of polyurethane fibers. Polymer, 43 (11). pp. 3303-3309. ISSN 0032-3861

Kloczkowski, A. and Erman, Burak and Mark, J. E. (2002) Effect of non-Gaussian chains on fluctuations of junctions in bimodal networks. Polymer, 43 (8). pp. 2569-2574. ISSN 0032-3861

Doruker, Pemra and Bahar, Ivet and Baysal, Canan and Erman, Burak (2002) Collective deformations in proteins determined by a mode analysis of molecular dynamics trajectories. Polymer, 43 (2). pp. 431-439. ISSN 0032-3861

Erkip, Albert and Erman, Burak and Seok, Chaok and Dil, Ken (2002) Parameter optimization for the Gaussian model of protein folding. Polymer, 43 (2). pp. 495-501. ISSN 0032-3861

Erman, Burak (2001) Analysis of multiple folding routes of proteins by a coarse-grained dynamics model. Biophysical Journal, 81 (6). pp. 3534-3544. ISSN 0006-3495 (Print) 1542-0086 (Online)

İnci, Mehmet Naci and Erman, Burak and Okay, O. and Durmaz, S. (2001) Elastic behaviour of solution cross-linked poly(isobutylene) gels under large compression. Polymer, 42 (8). pp. 3771-3777. ISSN 0032-3861

Baysal, Canan and Erman, Burak and Chu, Benjamin (2001) Conformational features of poly(1,1-dihydroperfluorooctyl acrylate) and poly(vinyl acetate) diblock oligomers in supercritical carbon dioxide. Journal of Chemical Physics, 114 (12). pp. 5444-5449. ISSN 0021-9606

Bokobza, Liliane and Erman, Burak (2000) A theoretical and experimental study of filler effect on stress-deformation-segmental orientation relations for poly(dimethylsiloxane) networks. Macromolecules, 33 (23). pp. 8858-8864. ISSN 0024-9297

Bahar, Ivet and Erman, Burak and Jernigan, Robert L. and Atılgan, Ali Rana and Covell, David G. (1999) Collective motions in HIV-1 reverse transcriptase: examination of flexibility and enzyme function. Journal of Molecular Biology, 285 (3). pp. 1023-1037. ISSN 0022-2836

Erman, Burak (1999) Application of the Gaussian theory of elastomeric networks to native proteins: analysis of fluctuations and the dynamic scattering function. Computational and Theoretical Polymer Science, 9 (3-4). pp. 295-299. ISSN 1089-3156

Demirel, Melik C. and Atılgan, Ali Rana and Jernigan, Robert L. and Erman, Burak and Bahar, Ivet (1998) Identification of kinetically hot residues in proteins. Protein Science, 7 (12). pp. 2522-2532. ISSN 0961-8368 (Print) 1469-896X (Online)

Papers in Conference Proceedings

Menceloğlu, Yusuf Z. and Bilgin, Nalan and Akbulut, Özge and Taşkent, Hümeyra and Gören, Kerem Behiç and Erman, Burak (2004) Preparation of polymeric nanocapsules with perfluoroalkyl whiskers in supercritical carbon dioxide. In: National ACS Meeting, Philadelphia, USA