Items where Author is "Berksöz, Melike"

Berksöz, Melike and Atılgan, Ali Rana and Kocuk, Burak and Atılgan, Canan (2025) Multiply perturbed response to disclose allosteric control of conformational change: application to fluorescent biosensor design. Journal of Molecular Biology . ISSN 0022-2836 (Print) 1089-8638 (Online) Published Online First https://dx.doi.org/10.1016/j.jmb.2025.169234

Berksöz, Melike and Atılgan, Canan (2025) Ranking single fluorescent protein-based calcium biosensor performance by molecular dynamics simulations. Journal of Chemical Information and Modeling, 65 (1). pp. 338-350. ISSN 1549-9596 (Print) 1549-960X (Online)

Berksöz, Melike and Atılgan, Canan (2024) Allosteric modulation of fluorescence revealed by hydrogen bond dynamics in a genetically encoded maltose biosensor. Proteins: Structure, Function and Bioinformatics, 92 (8). pp. 923-932. ISSN 0887-3585 (Print) 1097-0134 (Online)

Berksöz, Melike (2024) Investigation of conformational dynamics of single fluorescent protein-based biosensors by molecular dynamics simulations. [Thesis]

Atılgan, Canan and Liu, Gökşin and Jalalpour, Farzaneh and Ekmen, Erhan and Berksöz, Melike and Atılgan, Ali Rana and Sayers, Zehra (2023) Increased ionic strength triggers multiple conformations in both apo and holo forms of bacterial ferric binding protein. In: Biophysical Society Annual Meeting, San Diego, CA, USA

Barakat, Sarah Mohammed Mohammed and Berksöz, Melike and Zahedimaram, Pegah and Piepoli, Sofia and Erman, Batu (2022) Nanobodies as molecular imaging probes. Free Radical Biology and Medicine, 182 . pp. 260-275. ISSN 0891-5849 (Print) 1873-4596 (Online)