Items where Author is "Aykut, Ayşe Özlem"

Article

Aykut, Ayşe Özlem and Atılgan, Ali Rana and Atılgan, Canan (2013) Designing molecular dynamics simulations to shift populations of the conformational states of calmodulin. PLoS Computational Biology, 9 (12). ISSN 1553-734X

Negi, Sunita and Aykut, Ayşe Özlem and Atılgan, Ali Rana and Atılgan, Canan (2012) Calmodulin readily switches conformation upon protonating high pK(a) acidic residues. Journal of Physical Chemistry B, 116 (24). pp. 7145-7153. ISSN 1520-6106

Atılgan, Ali Rana and Aykut, Ayşe Özlem and Atılgan, Canan (2011) Subtle pH differences trigger single residue motions for moderating conformations of calmodulin. Journal of Chemical Physics, 135 (15). ISSN 0021-9606

Atılgan, Canan and Aykut, Ayşe Özlem and Atılgan, Ali Rana (2008) How a vicinal layer of solvent modulates the dynamics of proteins. Biophysical Journal, 94 . pp. 79-89. ISSN 0006-3495

Papers in Conference Proceedings

Atılgan, Ali Rana and Aykut, Ayşe Özlem and Atılgan, Canan (2013) Non-equilibrium fluctuation theorems, redundant paths in proteins, and elucidating conformational changes by single-residue perturbations. In: 57th Annual Meeting of the Biophysical-Society, Philadelphia, PA

Aykut, Ayşe Özlem and Atılgan, Ali Rana and Atılgan, Canan (2011) Molecular recognition mechanisms of calmodulin examined by perturbation-response scanning. In: 2010 MRS Fall Meeting, Boston, Massachusetts

Thesis

Aykut, Ayşe Özlem (2013) Redistribution of states and inducing new channels for conformational change: computational studies on calmodulin. [Thesis]