Items where Author is "Abdizadeh, Haleh"

Article

Abdizadeh, Haleh and Jalalypour, Farzaneh and Atılgan, Ali Rana and Atılgan, Canan (2020) A coarse-grained methodology identifies intrinsic mechanisms that dissociate interacting protein pairs. Frontiers in Molecular Biosciences, 7 . ISSN 2296-889X

Tamer, Yusuf Talha and Gazsek, Ilona K. and Abdizadeh, Haleh and Batur, Tuğçe and Reynolds, Kimberly and Atılgan, Ali Rana and Atılgan, Canan and Toprak, Erdal (2019) High-order epistasis in catalytic power of dihydrofolate reductase gives rise to a rugged fitness landscape in the presence of trimethoprim selection. Molecular Biology and Evolution, 36 (7). pp. 1533-1550. ISSN 0737-4038 (Print) 1537-1719 (Online)

Abdizadeh, Haleh and Atılgan, Ali Rana and Atılgan, Canan and Dedeoğlu, Burcu (2017) Computational approaches for deciphering the equilibrium and kinetic properties of iron transport proteins. Metallomics, 9 (11). pp. 1513-1533. ISSN 1756-5901 (Print) 1756-591X (Online)

Abdizadeh, Haleh and Tamer, Yusuf Talha and Acar, Ömer and Toprak, Erdal and Atılgan, Ali Rana and Atılgan, Canan (2017) Increased substrate affinity in the escherichia coli L28R dihydrofolate reductase mutant causes trimethoprim resistance. Physical Chemistry Chemical Physics, 19 (18). pp. 11416-11428. ISSN 1463-9076 (Print) 1463-9084 (Online)

Abdizadeh, Haleh and Atılgan, Ali Rana and Atılgan, Canan (2017) Mechanisms by which salt concentration moderates the dynamics of human serum transferrin. Journal of Physical Chemistry B, 121 (18). pp. 4778-4789. ISSN 1520-6106 (Print) 1520-5207 (Online)

Abdizadeh, Haleh and Atılgan, Canan (2016) Predicting long term cooperativity and specific modulators of receptor interactions in human transferrin from dynamics within a single microstate. Physical Chemistry Chemical Physics, 18 (11). pp. 7916-7926. ISSN 1463-9076 (Print) 1463-9084 (Online)

Abdizadeh, Haleh and Güven, Gökçe and Atılgan, Ali Rana and Atılgan, Canan (2015) Perturbation response scanning specifies key regions in subtilisin serine protease for both function and stability. Journal of Enzyme Inhibition and Medicinal Chemistry, 30 (6). pp. 867-873. ISSN 1475-6366 (Print) 1475-6374 (Online)

Abdizadeh, Haleh and Atılgan, Ali Rana and Atılgan, Canan (2015) Detailed molecular dynamics simulations of human transferrin provide insights into iron release dynamics at serum and endosomal pH. Journal of Biological Inorganic Chemistry, 20 (4). pp. 705-718. ISSN 0949-8257 (Print) 1432-1327 (Online)

Papers in Conference Proceedings

Abdizadeh, Haleh and Atılgan, Ali Rana and Atılgan, Canan (2016) Computational modeling of iron binding and release in human serum transferrin. In: 41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Turkey

Abdizadeh, Haleh and Acar, Ömer and Güçlü, Tandaç Fürkan and Tamer, Yusuf Talha and Altınuşak, Tuğçe and Toprak, Erdal and Atılgan, Ali Rana and Atılgan, Canan (2016) Computational assessment of trimethoprim resistance in dihydrofolate reductase. In: 60th Annual Meeting of the Biophysical Society, Los Angeles, CA

Abdizadeh, Haleh and Atılgan, Canan (2015) Mechanically hot spots correlate with cooperativity and function in human transferrin. In: 10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress, Dresden, Germany

Thesis

Abdizadeh, Haleh (2017) Modeling and simulation of processes regulating protein binding in various environments. [Thesis]