Time delay during intra-base proton tunneling in the guanine base of the single stranded DNA

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Özçelik, Elif and Akar, Demet Eda and Zaman, Semih and Demir, Durmuş Ali (2022) Time delay during intra-base proton tunneling in the guanine base of the single stranded DNA. Progress in Biophysics and Molecular Biology, 173 . pp. 4-10. ISSN 0079-6107 (Print) 1873-1732 (Online)

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Abstract

Spontaneous point mutations are one of the main actors in evolution, and the tautomerization of organic bases in the DNA is hypothesized to be the underlying mechanism of this crucial process. Tautomerization can be induced by proton tunneling, and if it occurs in single-stranded DNA (ssDNA) during the replication process, tautomerized bases might give rise to a mismatch, which will eventually defect the genetic code. In the present work, we report on the tautomerization time in the guanine base of the ssDNA. The model we use includes an intra-base tunneling mechanism such that time tunneling (delay time) is estimated to be around a few pico-seconds. The time delay is found to be biologically relevant which indicates that it is long enough to induce point mutations. Our results close a gap in the literature and sheds light on the importance of point mutations originating from quantum effects in the ssDNA.
Item Type: Article
Uncontrolled Keywords: Entropic tunneling time; Intra-base proton tunneling; Single stranded DNA
Divisions: Faculty of Engineering and Natural Sciences
Depositing User: Durmuş Ali Demir
Date Deposited: 21 Aug 2022 23:20
Last Modified: 21 Aug 2022 23:20
URI: https://research.sabanciuniv.edu/id/eprint/44194

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