Generating explanations for biomedical queries
Erdem, Esra and Öztok, Umut (2015) Generating explanations for biomedical queries. Theory and Practice of Logic Programming, 15 (Part: 1). pp. 35-78. ISSN 1471-0684 (Print) 1475-3081 (Online)
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Official URL: http://dx.doi.org/10.1017/S1471068413000598
We introduce novel mathematical models and algorithms to generate (shortest or k different) explanations for biomedical queries, using answer set programming. We implement these algorithms and integrate them in BioQuery-ASP. We illustrate the usefulness of these methods with some complex biomedical queries related to drug discovery, over the biomedical knowledge resources PharmGKB, DrugBank, BioGRID, CTD, SIDER, Disease Ontology, and Orphadata.
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