Generating explanations for biomedical queries

Erdem, Esra and Öztok, Umut (2015) Generating explanations for biomedical queries. Theory and Practice of Logic Programming, 15 (Part: 1). pp. 35-78. ISSN 1471-0684 (Print) 1475-3081 (Online)

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Official URL: http://dx.doi.org/10.1017/S1471068413000598


We introduce novel mathematical models and algorithms to generate (shortest or k different) explanations for biomedical queries, using answer set programming. We implement these algorithms and integrate them in BioQuery-ASP. We illustrate the usefulness of these methods with some complex biomedical queries related to drug discovery, over the biomedical knowledge resources PharmGKB, DrugBank, BioGRID, CTD, SIDER, Disease Ontology, and Orphadata.

Item Type:Article
Uncontrolled Keywords:answer set programming; explanation generation; query answering; biomedical queries
ID Code:23349
Deposited By:Esra Erdem
Deposited On:17 Jan 2014 11:01
Last Modified:01 Aug 2019 15:35

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