title   
  

Faculty/Program: Biological Sciences & Bio Eng.

Number of items at this level: 357.

2014

Mehta, Rajendra and Geçkil, Hikmet and Gözüaçık, Devrim (2014) Turkish Journal of Biology: Special Issue on cancer: normal cells' reply to a deadly fate. [Volumes Edited / Special Issues] (Accepted/In Press)

Kurtoğlu, Evrim and Kaya, Alihan and Gözüaçık, Devrim and Acar, Funda Yağcı and Koşar, Ali (2014) Experimental study on convective heat transfer performance of iron oxide based ferrofluids in microtubes. Journal of Thermal Science and Engineering Applications, 6 (3). ISSN 1948-5085 (Print) 1948-5093 (Online)

Özbey, Arzu and Karimzadehkhouei, Mehrdad and Yalçın, Sinan Eren and Gözüaçık, Devrim and Koşar, Ali (2014) Modeling of ferrofluid magnetic actuation with dynamic magnetic fields in small channels. (Accepted/In Press)

Tada, Seiichi and Durmaz Timuçin, Emel and Kitajima, Takashi and Sezerman, Uğur and Ito, Yoshihiro (2014) Direct in vitro selection of titanium-binding epidermal growth factor. Biomaterials, 35 (11). pp. 3497-3503. ISSN 0142-9612 (Print) 1878-5905 (Online)

2013

Çakmak, İsmail (2013) Magnesium in crop production, food quality and human health. [Volumes Edited / Special Issues]

Açıksöz Özden, Seher Bahar and Öztürk, Levent and Yazıcı, Mustafa Atilla and Çakmak, İsmail (2013) Inclusion of urea in the foliar 59FeEDTA-Solution stimulated leaf penetration and translocation of 59Fe within wheat plants. In: XVII. International Plant Nutrition Colloquium & Boron Satellite Meeting, Istanbul, Turkey

Akpınar, Bala Anı and Lucas, Stuart J. and Budak, Hikmet (2013) Genomics approaches for crop improvement against abiotic stress. Scientific World Journal . ISSN 1537-744X

Aslan, Onur Şevket and Kızıltaş, Güllü (2013) Computational design of tissue scaffolds for cartilage repair via the level-set method. In: 11th World Congress of the International Cartilage Repair Society (ICRS 2013), Izmir, Turkey

Aslan, Onur Şevket and Kızıltaş, Güllü (2013) Computational design of tissue scaffolds via the level-set method. In: Tissue Engineering and Regenerative Medicine International Society (TERMIS-EU 2013), Istanbul, Turkey

Atasever Arslan , Belkıs and Erdem-Kuruca , Serap and Karakaş, Zeynep and Erman, Batu and Ergen, Arzu (2013) Effects of micro environmental factors on natural killer activity (NK) of beta thalassemia major patients. Cell Immunology, 282 (2). pp. 93-99. ISSN 0008-8749 (Print) 1090-2163 (Online)

Bakır Güngör, Burcu and Egemen, Ece and Sezerman, Uğur (2013) PANOGA: a web-server for identification of SNP targeted pathways from genome-wide association study data. (Accepted/In Press)

Bakır-Güngör, Burcu and Baykan, B. and İşeri, S. Uğur and Tuncer, F. N. and Sezerman, Uğur (2013) Identifying SNP targeted pathways in partial epilepsies with genome-wide association study data. Epilepsy Research, 105 (1-2). pp. 92-102. ISSN 0920-1211 (Print) 1872-6844 (Online)

Bakır-Güngör, Burcu and Sezerman, Uğur (2013) The identification of pathway markers in intracranial aneurysm using genome-wide association data from two different populations. PLoS One, 8 (3). ISSN 1932-6203

Bakış, Yasin and Otu, Hasan H. and Taşçı, Nivart and Meydan, Cem and Bilgin, Neşe and Yüzbaşıoğlu, Sırrı and Sezerman, Uğur (2013) Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure. BMC Bioinformatics, 14 . ISSN 1471-2105

Bilsborrow, Paul and Cooper, Julia and Tetard-Jones, Catherine and Srednicka-Tober, Dominika and Baraniski, Marcin and Eyre, Mick and Schmidt, Christoph and Shotton, Peter and Volakakis, Nikolaos and Çakmak, İsmail and Öztürk, Levent and Leifert, Carlo and Wilcockson, Steve (2013) The effect of organic and conventional management on the yield and quality of wheat grown in a long-term field trial. European Journal of Agronomy, 51 . pp. 71-80. ISSN 1161-0301 (Print) 1873-7331 (Online)

Bodur, Çağrı and Kütük, Özgür and Karslı, Gizem and Isimjan, Tayirjan T. and Harrison, Paul and Başağa, Hüveyda (2013) Pramanicin analog induces apoptosis in human colon cancer cells: critical roles for Bcl-2, Bim, and p38 MAPK signaling. PLoS One, 8 (2). ISSN 1932-6203

Boonchuay, Panomwan and Çakmak, İsmail and Rerkasem, Benjavan and Prom-U-Thai, Chanakan (2013) Effect of different foliar zinc application at different growth stages on seed zinc concentration and its impact on seedling vigor in rice. Soil Science and Plant Nutrition, 59 (2). pp. 180-188. ISSN 0038-0768 (Print) 1747-0765 (Online)

Budak, Hikmet (2013) Genome diversity in brachypodium distachyon: deep sequencing of highly diverse inbred lines. (Submitted)

Budak, Hikmet (2013) Analysis and exploitation of cereal genomes with the aid of brachypodium. In: Tuberosa, Roberto, (ed.) Genomics of Plant Genetic Resources. Springer, Springer Science+Business Media Dordrecht. (Accepted/In Press)

Budak, Hikmet and Akpınar, Bala Anı and Ünver, Turgay and Türktaş, Mine (2013) Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI-MS/MS. Plant Molecular Biology, 83 (1-2). pp. 89-103. ISSN 0167-4412 (Print) 1573-5028 (Online)

Budak, Hikmet and Kantar, Melda (2013) New wheat micro RNA using whole genome sequences. (Accepted/In Press)

Budak, Hikmet and Kantar, Melda and Yucebilgili, Kuaybe (2013) Drought tolerance in modern and wild wheat. Scientific World Journal . ISSN 1537-744X

Candan, Nilgün and Çakmak, İsmail and Öztürk, Levent (2013) High seed zinc concentration assures high seedling vigor and biomass production in durum wheat under zinc deficiency and drought stress. In: XVII. International Plant Nutrition Colloquium & Boron Satellite Meeting, Istanbul, Turkey

Çıkım, Taha Abdullah and Gözüaçık, Devrim and Koşar, Ali (2013) Power reclamation efficiency of a miniature energy harvesting device using external fluid flows. (Accepted/In Press)

Daneshbakhsh, Bahareh and Khoshgoftarmanesh, Amir Hossein and Shariatmadari, Hossein and Çakmak, İsmail (2013) Effect of zinc nutrition on salinity-induced oxidative damages in wheat genotypes differing in zinc deficiency tolerance. Acta Physiologiae Plantarum, 35 (3). pp. 881-889. ISSN 0137-5881 (Print) 1861-1664 (Online)

Daneshbakhsh, Bahareh and Khoshgoftarmanesh, Amir Hossein and Shariatmadari, Hossein and Çakmak, İsmail (2013) Phytosiderophore release by wheat genotypes differing in zinc deficiency tolerance grown with Zn-free nutrient solution as affected by salinity. Journal of Plant Physiology, 170 (1). pp. 41-46. ISSN 0176-1617 (Print) 1618-1328 (Online)

Durmaz Timuçin, Emel and Kuyucak, Serdar and Sezerman, Uğur (2013) Modifying the catalytic preference of tributyrin in Bacillus thermocatenulatus lipase through in-silico modeling of enzyme-substrate complex. Protein Engineering, Design and Selection, 26 (5). pp. 325-333. ISSN 1741-0126 (Print) 1741-0134 (Online)

Durmaz Timuçin, Emel and Sezerman, Uğur (2013) The conserved lid tryptophan, W211, potentiates thermostability and thermoactivity in bacterial thermoalkalophilic lipases. PLoS One, 8 (12). ISSN 1932-6203

Eberhart, Karin and Oral, Özlem and Gözüaçık, Devrim (2013) Induction of autophagic cell death by anticancer agents. In: Hayat, M. A., (ed.) Autophagy: Cancer, Other Pathologies, Inflammation, Immunity, and Infection, and Aging. Elsevier, The Netherlands, pp. 179-202. ISBN 9780124055308 (Print) 9780124055353 (Online)

Erzurumlu, Yalçın and Aydın, Köse Fadime and Gözen, Oğuz and Gözüaçık, Devrim and Toth, Eric A. and Ballar, Petek (2013) A unique ibmpfd-related P97/VCP mutation with differential binding pattern and subcellular localization. International Journal of Biochemistry and Cell Biology . ISSN 1357-2725 (Print) 1878-5875 (Online)

Gözüaçık, Devrim and Koşar, Ali and Yağcı-Acar, Havva Funda and İnci, İlyas (2013) Anticancer use of nanoparticles as nucleic acid carriers. (Accepted/In Press)

Gün, Gökhan and Dinler Doğanay, Gizem and Yürüm, Yuda (2013) Biodesulfurization of DBT by a hyperthermophilic archaeon sulfolobus solfataricus P2. Current Opinion in Biotechnology, 24 (Supplement: 1). S34-S35. ISSN 0958-1669

Hirsh, Stacey L. and McKenzie, David R. and Nosworthy, Neil J. and Denman, John A. and Sezerman, Uğur and Bilek, Marcela M. M. (2013) The Vroman effect: competitive protein exchange with dynamic multilayer protein aggregates. Colloids and Surfaces B: Biointerfaces, 103 . pp. 395-404. ISSN 0927-7765 (Print) 1873-4367 (Online)

İtah, Zeynep and Oral, Özlem and Perk, Osman Yavuz and Şeşen, Muhsincan and Demir, Ebru and Erbil, Seçil and Doğan-Ekici, A. Işın and Ekici, Sinan and Koşar, Ali and Gözüaçık, Devrim (2013) Hydrodynamic cavitation kills prostate cells and ablates benign prostatic hyperplasia tissue. Experimental Biology and Medicine, 238 (11). pp. 1-9. ISSN 1535-3702 (Print) 1535-3699 (Online)

Korkmaz, Gözde and Tekirdağ, Kumsal Ayşe and Özturk, Deniz Gülfem and Koşar, Ali and Sezerman, Uğur and Gözüaçık, Devrim (2013) MIR376A is a regulator of starvation-induced autophagy. PLoS One, 8 (12). ISSN 1932-6203

Kurtoğlu, Evrim and Kaya, Alihan and Gözüaçık, Devrim and Acar, Funda Yağcı and Koşar, Ali (2013) Heat transfer enhancement with iron oxide nanoparticle based ferrofluids. In: 11th International Conference on Nanochannels, Microchannels, and Minichannels (ICNMM2013), Sapporo, Japan

Küçükgül, Can and Özler, Saime Burçe and Karakaş, Hacer Ezgi and Gözüaçık, Devrim and Koç, Bahattin (2013) 3D hybrid bioprinting of macrovascular structures. In: 3rd ECCOMAS Thematic Conference on Tissue Engineering (ICTE 2013), Leiria, Portugal

Lucas, Stuart J. and Akpınar, Bala Anı and Kantar, Melda and Weinstein, Zohar Bat-El and Aydınoğlu, Fatma and Safar, Jan and Simkova, Hana and Frenkel, Zeev and Korol, Abraham and Magni, Federica and Cattonaro, Federica and Vautrin, Sonia and Bellec, Arnaud and Berges, Helene and Dolezel, Jaroslav and Budak, Hikmet (2013) Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A. PLoS One, 8 (4). ISSN 1932-6203

Lucas, Stuart J. and Baştaş, Kubilay and Budak, Hikmet (2013) Exploring the interaction between small RNAs and R genes during Brachypodium response to Fusarium culmorum infection. (Submitted)

Mengütay, Melis and Ceylan, Yasemin and Kutman, Ümit Barış and Çakmak, İsmail (2013) Adequate magnesium nutrition mitigates adverse effects of heat stress on maize and wheat. Plant and Soil, 368 (1-2). pp. 57-72. ISSN 0032-079X (Print) 1573-5036 (Online)

Meydan, Cem and Otu, Hasan H. and Sezerman, Uğur (2013) Prediction of peptides binding to MHC class I and II alleles by temporal motif mining. BMC Bioinformatics, 14 (Supplement 2). ISSN 1471-2105

Morgounov, Alexey I. and Belan, Igor and Zelenskiy, Yuriy and Roseeva, Lyudmila and Toemoeskoezi, Sandor and Bekes, Ferenc and Abugalieve, Aygul and Çakmak, İsmail and Vargas, Mateo and Crossa, Jose (2013) Historical changes in grain yield and quality of spring wheat varieties cultivated in Siberia from 1900 to 2010. Canadian Journal of Plant Science, 93 (3). pp. 425-433. ISSN 0008-4220

Özbey, Arzu and Karimzadehkhouei, Mehrdad and Kurtoğlu, Evrim and Koşar, Ali (2013) Simulation of magnetic actuation of ferrofluids in microtubes. In: 11th International Conference on Nanochannels, Microchannels, and Minichannels (ICNMM2013), Sapporo, Japan

Palmer, Mike W. and Cooper, Julia and Tetard-Jones, Catherine and Srednicka-Tober, Dominika and Baranski, Marcin and Eyre, Mick and Shotton, Peter N. and Volakakis, Nikolaos and Çakmak, İsmail and Öztürk, Levent and Leifert, Carlo and Wilcockson, Steve J. and Bilsborrow, Paul E. (2013) The influence of organic and conventional fertilisation and crop protection practices, preceding crop, harvest year and weather conditions on yield and quality of potato (Solanum tuberosum) in a long-term management trial. European Journal of Agronomy, 49 . pp. 83-92. ISSN 1161-0301 (Print) 1873-7331 (Online)

Pont, Caroline and Murat, Florent and Guizard, Sebastien and Flores, Raphael and Foucrier, Severine and Bidet, Yannick and Quraishi, Umar Masood and Alaux, Michael and Dolezel, Jaroslav and Fahima, Tzion and Budak, Hikmet and Keller, Beat and Salvi, Silvio and Maccaferri, Marco and Steinbach, Delphine and Feuillet, Catherine and Quesneville, Hadi and Salse, Jerome (2013) Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant Journal, 76 (6). pp. 1030-1044. ISSN 0960-7412 (Print) 1365-313X (Online)

Sayers, Zehra (2013) Uncharted territory, untapped potential. Science Omega Review Europe (issue 1).

Sayers, Zehra and Aydın, Mert and Bal, Erhan and Yeşilırmak, Filiz and Konarev, Petr V. and Petoukhov, Maxim V. and Roessle, Manfred and Kikhney, Alexey G. and Shang, Weifeng and Svergun, Dmitri I. (2013) Comparative characterization of apo-, reconstituted- and in vivo-folded forms of a durum wheat metallothionein. In: 57th Annual Meeting of the Biophysical-Society, Philadelphia, PA

Sayers, Zehra and Özcan, Zuhal (2013) Attitudes towards teaching evolution in Turkey. APS News, 22 (6).

Srednicka-Tober, Dominika and Baranski, Marcin and Gromadzka-Ostrowska, Joanna and Skwarlo-Sonta, Krystyna and Rembialkowska, Ewa and Hajslova, Jana and Schulzova, Vera and Çakmak, İsmail and Öztürk, Levent and Krolikowski, Tomasz and Wisniewska, Katarzyna and Hallmann, Ewelina and Baca, Elzbieta and Eyre, Mick and Steinshamn, Havard and Jordon, Teresa and Leifert, Carlo (2013) Effect of crop protection and fertilization regimes used in organic and conventional production systems on feed composition and physiological parameters in rats. Journal of Agricultural and Food Chemistry, 61 (5). pp. 1017-1029. ISSN 0021-8561 (Print) 1520-5118 (Online)

Tai, Xuguang and Erman, Batu and Alag, Amala and Mu, Jie and Kimura, Motoko and Katz, Gil and Guinter, Terry and McCaughtry, Tom and Etzensperger, Ruth and Feigenbaum, Lionel and Singer, Dinah S. and Singer, Alfred (2013) Foxp3 transcription factor is proapoptotic and lethal to developing regulatory T cells unless counterbalanced by cytokine survival signals. Immunity, 38 (6). pp. 1116-1128. ISSN 1074-7613 (Print) 1097-4180 (Online)

Tekdal, Dilek and Çetiner, Selim (2013) The effects of different combinations and varying concentrations of growth regulators on the regeneration of selected Turkish cultivars of melon. In: Silva-Opps, Marina, (ed.) Current Progress in Biological Research. Agricultural and Biological Sciences. InTech, Acadia, Canada, pp. 257-275. ISBN 978-953-51-1097-2

Tekiner, Tugce Ayca and Başağa, Hüveyda (2013) Role of microRNA deregulation in breast cancer cell chemoresistance and stemness. Current Medicinal Chemistry, 20 (27). pp. 3358-3369. ISSN 0929-8673 (Print) 1875-533X (Online)

Tekirdağ, Kumsal Ayşe and Korkmaz, Gözde and Özturk, Deniz Gülfem and Agami, Reuven and Gözüaçık, Devrim (2013) MIR181A regulates starvation- and rapamycin-induced autophagy through targeting of ATG5. Autophagy, 9 (3). pp. 1-12. ISSN 1554-8627 (Print) 1554-8635 (Online)

Tekirdağ, Kumsal Ayşe and Özturk, Deniz Gülfem and Gözüaçık, Devrim (2013) Alteration in autophagic-lysosomal potential during aging and neurological diseases: the microRNA perspective. Current Pathobiology Reports, 1 (4). pp. 1-36. ISSN 2167-485X

Tekirdağ, Kumsal Ayşe and Öztürk, Deniz Gülfem and Gözüaçık, Devrim (2013) Regulation of autophagy by miRNAs. In: Hayat, M. A., (ed.) Autophagy: Cancer, Other Pathologies, Inflammation, Immunity, and Infection, and Aging. Elsevier, The Netherlands, pp. 1-35. ISBN 9780124055308 (Print) 9780124055353 (Online) (Accepted/In Press)

Tezil, Tuğsan and Başağa, Hüveyda (2013) Modulation of cell death in age-related diseases. (Accepted/In Press)

Tiziana, Centofanti and Sayers, Zehra and Cabello-Conejo, Maria Isabel and Kidd, Petra and Nishizawa, Naoko K. and Kakei, Yusuke and Davis, Allen P. and Sicher, Richard C. and Chaney, Rufus L. (2013) Xylem exudate composition and root-to-shoot nickel translocation in Alyssum species. Plant and Soil, 373 (1-2). pp. 59-75. ISSN 0032-079X (Print) 1573-5036 (Online)

Unver, Turgay and Türktaş, Mine and Budak, Hikmet (2013) In planta evidence for the involvement of a ubiquitin conjugating enzyme (UBC E2 clade) in negative regulation of disease resistance. Plant Molecular Biology Reporter, 31 (2). pp. 323-334. ISSN 0735-9640 (Print) 1572-9818 (Online)

Yılancıoğlu, Kaan and Çetiner, Selim (2013) Rediscovery of historical vitis vinifera varieties from the South Anatolia region by using amplified fragment length polymorphism and simple sequence repeat DNA fingerprinting methods. Genome, 56 (5). pp. 295-302. ISSN 0831-2796 (Print) 1480-3321 (Online)

Yıldız Kutman, Bahar and Kutman, Ümit Barış and Çakmak, İsmail (2013) Foliar nickel application alleviates detrimental effects of glyphosate drift on yield and seed quality of wheat. Journal of Agricultural and Food Chemistry, 61 (35). pp. 8364-8372. ISSN 0021-8561 (Print) 1520-5118 (Online)

Yıldız Kutman, Bahar and Kutman, Ümit Barış and Çakmak, İsmail (2013) Nickel-enriched seed and externally supplied nickel improve growth and alleviate foliar urea damage in soybean. Plant and Soil, 363 (1-2). pp. 61-75. ISSN 0032-079X (Print) 1573-5036 (Online)

Yılmaz, Özlem and Altıntaş, Gamze and Çakmak, İsmail and Öztürk, Levent (2013) Zinc uptake and transport in wild emmer and cultivated durum wheat differing in seed zinc concentrations. In: XVII. International Plant Nutrition Colloquium & Boron Satellite Meeting, Istanbul, Turkey

Yucebilgili, Kuaybe and Kantar, Melda and Lucas, Stuart J. and Budak, Hikmet (2013) Unique and conserved MicroRNAs in wheat chromosome 5D revealed by next-generation sequencing. PLoS One, 8 (7). ISSN 1932-6203

Zhang, Yue-Qiang and Yazıcı, Mustafa Atilla and Gökmen, Özay Özgür and Çakmak, İsmail and Zhang, Fu-Suo and Zou, Chun-Qin (2013) Comparison of winter wheat genotypes differing in zinc efficiency and origin: the zinc uptake and enzyme activity. Communications in Soil Science and Plant Analysis, 44 (19). pp. 2875-2883. ISSN 0010-3624 (Print) 1532-2416 (Online)

2012

Bruulsema, Tom W. and Heffer, Patrick and Welch, Ross M. and Çakmak, İsmail and Moran, Kevin, eds. (2012) Fertilizing crops to improve human health: a scientific review volume 1: food and nutrition security. IPNI/IFA, Paris, France.

Çakmak, İsmail and Hoffland, Ellis (2012) Zinc for the improvement of crop production and human health. [Volumes Edited / Special Issues]

Özpolat, Bülent and Gözüaçık, Devrim (2012) Journal of Oncology: Role of autophagy in cancer development and therapy. [Volumes Edited / Special Issues] (Accepted/In Press)

Adoro, Stanley and McCaughtry, Thomas and Erman, Batu and Alag, Amala and Van Laethem, François and Park, Jung-Hyun and Tai, Xuguang and Kimura, Motoko and Wang, Lie and Grinberg, Alex and Kubo, Masato and Bosselut, Remy and Love, Paul and Singer, Alfred (2012) Coreceptor gene imprinting governs thymocyte lineage fate. The EMBO Journal, 31 (2). pp. 366-377. ISSN 0261-4189 (print) ; 1460-2075 (online)

Albayrak, Aydın and Sezerman, Uğur (2012) Discrimination of thermophilic and mesophilic proteins using reduced amino acid alphabets with n-grams. Current Bioinformatics, 7 (2). pp. 152-158. ISSN 1574-8936

Altıntaş, Zeynep and Tothill, I. E. (2012) DNA-based biosensor platforms for the detection of TP53 mutation. Sensors and Actuators B: Chemical, 169 . pp. 188-194. ISSN 0925-4005

Anbar, Michael and Gül, Özgür and Lamed, Raphael and Sezerman, Uğur and Bayer, Edward A. (2012) Improved thermostability of clostridium thermocellum endoglucanase Cel8A by using consensus-guided mutagenesis. Applied and Environmental Microbiology, 78 (9). pp. 3458-3464. ISSN 0099-2240 (print) ; 1098-5336 (online)

Atılgan, Ali Rana and Atılgan, Canan (2012) Local motifs in proteins combine to generate global functional moves. Briefings in Functional Genomics (Sl), 11 (6). pp. 479-488. ISSN 2041-2649 (Print) 2041-2657 (Online)

Aydın, Mert and Bal, Erhan and Yeşilırmak, Filiz and Dinler, Gizem and Yar, Sümeyye and Konarev, Petr V. and Petoukhov, Maxim V. and Roessle, Manfred and Kikhney, Alexey G. and Shang, Weifeng and Svergun, Dmitri I. and Sayers, Zehra (2012) Comparative characterization of apo-, reconstituted- and in vivo-folded forms of a durum wheat metallothionein. (Submitted)

Bakır-Güngör, Burcu and Remmers, Elaine and Kastner, Daniel L. and Meguro, Akira and Mizuki, Nobuhisa and Gül, Ahmet and Sezerman, Uğur (2012) The identification of pathway markers in Behcet's disease using genomewide association data from two different populations. In: Annual Scientific Meeting of the American-College-of-Rheumatology (ACR) and Association-of-Rheumatology-Health-Professionals (ARHP), Washington, DC

Bayram Akçapınar, Günseli and Gül, Özgür and Sezerman, Uğur (2012) From in silico to in vitro: modelling and production of trichoderma reesei endoglucanase 1 and its mutant in pichia pastoris. Journal of Biotechnology, 159 (1-2). pp. 61-68. ISSN 0168-1656 (print) ; 1873-4863 (online)

Bodur, Çağrı and Başağa, Hüveyda (2012) Bcl-2 inhibitors: emerging drugs in cancer therapy. Current Medicinal Chemistry (CMC), 19 (12). pp. 1804-1820. ISSN 0929-8673

Bodur, Çağrı and Kütük, Özgür and Tezil, Tuğsan and Başağa, Hüveyda (2012) Inactivation of Bcl-2 through I kappa B kinase (IKK)-dependent phosphorylation mediates apoptosis upon exposure to 4-hydroxynonenal (HNE). Journal of Cellular Physiology, 227 (11). pp. 3556-3565. ISSN 0021-9541

Budak, Hikmet (2012) Plant abiotic stress signalling. (Accepted/In Press)

Carlson, Dorthe and Norgaard, Jan Vaerum and Torun, Bülent and Çakmak, İsmail and Poulsen, Hanne Damgaard (2012) Bioavailability of trace elements in beans and zinc-biofortified wheat in pigs. Biological Trace Element Research, 150 (1-3). pp. 147-153. ISSN 0163-4984 (Print) 1559-0720 (Online)

Ceyhan, Ceran and Çokol, Murat and Cingöz, Sultan and Taşan, İpek and Öztürk, Mehmet and Yağcı, Tamer (2012) Novel anti-HER2 monoclonal antibodies: synergy and antagonism with tumor necrosis factor alpha. BMC Cancer, 12 . ISSN 1471-2407 (Print) 1471-2407 (Online)

Çetiner, Selim (2012) Bt pamuk intihar mı ettiriyor? Tarla Sera Dergisi . pp. 18-22. ISSN 1309-9116

Çetiner, Selim (2012) GDO yasağı ne getiriyor? ne götürüyor? 1. Tarla Sera Dergisi . pp. 94-96. ISSN 1309-9116

Çetiner, Selim (2012) GDO yasağı ne getiriyor? ne götürüyor? 2. Tarla Sera Dergisi . pp. 110-113. ISSN 1309-9116

Çetiner, Selim (2012) GDO-Kanser ilişkisi kanıtlandı mı? Tarla Sera Dergisi (26). pp. 16-18. ISSN 1309-9116

Çetiner, Selim (2012) GDO: çağdaş cehalet. Tarla Sera Dergisi (25). pp. 16-18. ISSN 1309-9116

Çetiner, Selim (2012) Gıda egemenliği mi dediniz? Tarla Sera Dergisi . pp. 14-17. ISSN 1309-9116

Çetiner, Selim (2012) Kabak tadı. Tarla Sera Dergisi . pp. 14-17. ISSN 1309-9116

Çetiner, Selim (2012) Sessiz bahar ne diyor(du)? Tarla Sera Dergisi (23). pp. 18-21. ISSN 1309-9116

Çetiner, Selim (2012) STK'lar tarımsal biyoteknolojiye nasıl bakıyor? Tarla Sera Dergisi . pp. 16-20. ISSN 1309-9116

Çetiner, Selim (2012) Yerseniz... Tarla Sera Dergisi (24). pp. 16-19. ISSN 1309-9116

Çevik, Şafak Işıl and Keskin, Nazlı and Belkaya, Serkan and Özlü, Meral İlçim and Deniz, Emre and Tazebay, Uygar Halis and Erman, Batu (2012) CD81 interacts with the T cell receptor to suppress signaling. PLoS One, 7 (11). ISSN 1932-6203

Çıkım, Taha Abdullah and Kaya, Alihan and Gözüaçık, Devrim and Koşar, Ali (2012) Power reclamation efficiency of a miniature energy harvesting device using internal fluid flows. In: Global Conference on Global Warming 2012, Istanbul, Turkey

Çıkım, Taha Abdullah and Koşar, Ali and Gözüaçık, Devrim and Tatar, Oğuz (2012) Power reclamation efficiency of a miniature energy harvesting device using internal fluid flows. In: ASME International Mechanical Engineering Congress and Exposition, Houston, Texas

Çürük, Sebahattin and Çetiner, Selim and Yalçın-Mendi, Yeşim and Carmeli-Weissberg, Mira and Graber, Ellen and Gaba, Victor (2012) Food-grade sugar can promote differentiation in melon (Cucumis melo L.) tissue culture. In Vitro Cellular & Developmental Biology - Plant , 48 (6). pp. 600-608. ISSN 1054-5476 (Print) 1475-2689 (Online)

Ghandilyan, Artak and Kutman, Ümit Barış and Yıldız Kutman, Bahar and Çakmak, İsmail and Aarts, Mark G. M. (2012) Genetic analysis of the effect of zinc deficiency on Arabidopsis growth and mineral concentrations. Plant and Soil, 361 (1-2). pp. 227-239. ISSN 0032-079X (Print) 1573-5036 (Online)

Gözüaçık, Devrim (2012) Otofaji analiz yöntemleri ve uygulama aşamaları. In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) II. Hücre Ölümü Araştırma Teknikleri Teorik Kursu. Eskisehir Osmangazi Üniversitesi Yayınları; 212. Eskisehir Osmangazi Üniversitesi, Eskisehir, pp. 133-146. ISBN 978-975-7936-95-4

Gözüaçık, Devrim (2012) Otofaji ve sinyal yolakları. In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) II. Hücre Ölümü Araştırma Teknikleri Teorik Kursu. Eskisehir Osmangazi Üniversitesi Yayınları; 212. Eskisehir Osmangazi Üniversitesi, Eskisehir, pp. 49-60. ISBN 978-975-7936-95-4

Kantar, Melda and Akpınar, Bala Anı and Valarik, Miroslav and Lucas, Stuart J. and Dolezel, Jaroslav and Hernandez, Pilar and Budak, Hikmet (2012) Subgenomic analysis of microRNAs in polyploid wheat. Functional and Integrative Genomics, 12 (3). pp. 465-479. ISSN 1438-793X (Print) 1438-7948 (Online)

Kaplan Türköz, Burcu and Zakharyuta, Anastasia and Şeşen, Muhsincan and Taralp, Alpay and Koşar, Ali (2012) Reversibility of functional and structural changes of lysozyme subjected to hydrodynamic flow. Journal of Nanotechnology in Engineering and Medicine, 3 (1). pp. 011006-011012. ISSN 1949-2944 (print) ; 1949-2952 (online)

Kautto, Liisa and Grinyer, Jasmine and Paulsen, Ian and Tetu, Sasha and Pillai, Aneesh and Pardiwalla, Swapneel and Sezerman, Uğur and Bayram Akçapınar, Günseli and Bergquist, Peter and Te'o, Junior and Nevalainen, Helena (2012) Stress effects caused by the expression of a mutant cellobiohydrolase I and proteasome inhibition in trichoderma reesei rut-C30. New Biotechnology . ISSN 1871-6784 (Print) 1876-4347 (Online)

Klionsky, Dan J. and Autophagy, Consortium and Gözüaçık, Devrim (2012) Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy, 8 (4). pp. 445-544. ISSN 1554-8627

Korkmaz, Gözde and Le Sage, Carlos and Tekirdağ, Kumsal Ayşe and Agami, Reuven and Gözüaçık, Devrim (2012) miR-376b controls starvation and mTOR inhibition-related autophagy by targeting ATG4C and BECN1. Autophagy, 8 (2). pp. 165-176. ISSN 1554-8627

Kutman, Ümit Barış and Yıldız Kutman, Bahar and Ceylan, Yasemin and Ova, Emir Ali and Çakmak, İsmail (2012) Contributions of root uptake and remobilization to grain zinc accumulation in wheat depending on post-anthesis zinc availability and nitrogen nutrition. Plant and Soil, 361 (1-2). pp. 177-187. ISSN 0032-079X (Print) 1573-5036 (Online)

Kuzuoğlu, Duygu and Cebeci Yalçınkaya, Özge and Akpınar, Bala Anı and Mitou, Geraldine and Korkmaz, Gözde and Gözüaçık, Devrim and Budak, Hikmet (2012) Autophagy-related gene, TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response. Planta, 236 (4). pp. 1081-1092. ISSN 0032-0935 (Print) 1432-2048 (Online)

Lucas, Stuart J. and Budak, Hikmet (2012) Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of triticum aestivum chromosome 1AL. PLoS One, 7 (7). ISSN 1932-6203

Lucas, Stuart J. and Simkova, Hana and Safar, Jan and Jurman, Irena and Cattonaro, Federica and Vautrin, Sonia and Bellec, Arnaud and Berges, Helene and Dolezel, Jaroslav and Budak, Hikmet (2012) Functional features of a single chromosome arm in wheat (1AL) determined from its structure. Functional and Integrative Genomics, 12 (1). pp. 173-182. ISSN 1438-793X (Print) 1438-7948 (Online)

Lyons, Graham and Çakmak, İsmail (2012) Agronomic biofortification of food crops with micronutrients. In: Bruulsema, Tom W. and Heffer, Patrick and Welch, Ross M. and Çakmak, İsmail and Moran, Kevin, (eds.) Fertilizing Crops to Improve Human Health: a Scientific Review Volume 1: Food and Nutrition Security. IPNI/IFA, Paris, France, pp. 97-122.

Manzeke, Grace M. and Mapfumo, Paul and Mtambanengwe, Florence and Chikowo, Regis and Tendayi, Takesure and Çakmak, İsmail (2012) Soil fertility management effects on maize productivity and grain zinc content in smallholder farming systems of Zimbabwe. Plant and Soil, 361 (1-2). pp. 57-69. ISSN 0032-079X (Print) 1573-5036 (Online)

Meydan, Cem and Sezerman, Uğur (2012) Representation of protein secondary structure using bond-orientational order parameters. In: 7th IAPR International Conference (PRIB 2012), Tokyo, Japan

Negi, Sunita and Atılgan, Ali Rana and Atılgan, Canan (2012) Driving calmodulin protein towards conformational shift by changing ionization states of selected residues. In: IUPAP Conference on Computational Physics (CCP 2011), Gatlinburg, Tennessee

Oral, Özlem and Irmak, Ster and Ekici, Sinan and Gözüaçık, Devrim (2012) Autophagy in urology (Ürolojide otofaji). In: Türkeri, Levent and Özer, Ayşe and Narter, Fehmi, (eds.) Moleküler Üroloji. Moleküler Üroloji: Ürolojik Hastalıkların Moleküler Temeli. Üroonkoloji Derneği Yayınları, İstanbul, pp. 271-283. ISBN 978-975-01697-2-4

Oral, Özlem and Öz-Arslan, Devrim and İtah, Zeynep and Naghavi, Atabak and Deveci, Remziye and Karaçalı, Sabire and Gözüaçık, Devrim (2012) Cleavage of Atg3 protein by caspase-8 regulates autophagy during receptor-activated cell death. Apoptosis, 17 (8). pp. 810-820. ISSN 1360-8185 (Print) 1573-675X (Online)

Perk, Osman Yavuz and Şeşen, Muhsincan and Gözüaçık, Devrim and Koşar, Ali (2012) Kidney stone erosion by micro scale hydrodynamic cavitation and consequent kidney stone treatment. Annals of Biomedical Engineering, 40 (9). pp. 1895-1902. ISSN 0090-6964 (Print) 1573-9686 (Online)

Phattarakul, N. and Rerkasem, B. and Li, L. J. and Wu, L. H. and Zou, C. Q. and Ram, H. and Sohu, V. S. and Kang, B. S. and Surek, H. and Kalaycı, M. and Yazıcı, Mustafa Atilla and Zhang, F. S. and Çakmak, İsmail (2012) Biofortification of rice grain with zinc through zinc fertilization in different countries. Plant and Soil, 361 (1-2). pp. 131-141. ISSN 0032-079X (Print) 1573-5036 (Online)

Prom-u-thai, Chanakan and Rerkasem, Benjavan and Yazıcı, Mustafa Atilla and Çakmak, İsmail (2012) Zinc priming promotes seed germination and seedling vigor of rice. Journal of Plant Nutrition and Soil Science, 175 (3). pp. 482-488. ISSN 1436-8730

Roçi, Irena (2012) Toward anti-cancer drugs: selection of anti-VEGF and anti-HER2 aptamer to inhibit cancer biomarkers. [Thesis]

Tekiner, Tugce Ayca and Başağa, Hüveyda (2012) Role of microRNA deregulation and cancer stem cells in drug resistant breast tumors. (Submitted)

Tezil, Tuğsan and Bodur, Çağrı and Kütük, Özgür and Başağa, Hüveyda (2012) IKK-beta mediates chemoresistance by sequestering FOXO3; a critical factor for cell survival and death. Cellular Signalling, 24 (6). pp. 1361-1368. ISSN 0898-6568

Timuçin, Can and Gül, Özgür and Kütük, Özgür and Başağa, Hüveyda (2012) Antibody array-based immunosensor for detecting cardiovascular disease risk markers. Journal of Immunoassay and Immunochemistry, 33 (3). pp. 275-290. ISSN 1532-1819

Tukel, Raşit and Atasever Arslan, Belkıs and Ertekin, Banu Aslantaş and Ertekin, Erhan and Oflaz, Serap and Ergen, Arzu and Kuruca, Serap Erdem and İşbir, Turgay (2012) Decreased IFN-gamma and IL-12 levels in panic disorder. Journal of Psychosomatic Research, 73 (1). pp. 63-67. ISSN 0022-3999

Uzbaş, Fatma and Sezerman, Uğur and Hartl, Lukas and Kubicek, Christian P. and Seiboth, Bernhard (2012) A homologous production system for Trichoderma reesei secreted proteins in a cellulase-free background. Applied Microbiology and Biotechnology, 93 (4). pp. 1601-1608. ISSN 0175-7598 (print) ; 1432-0614 (online)

Vuruşaner, Beyza and Poli, Giuseppe and Başağa, Hüveyda (2012) Tumor suppressor genes and ROS: complex networks of interactions. Free Radical Biology and Medicine, 52 (1). pp. 7-18. ISSN 0891-5849 (print) ; 1873-4596 (online)

Xue, Yan-Fang and Yue, Shan-Chao and Zhang, Yue-Qiang and Cui, Zhen-Ling and Chen, Xin-Ping and Yang, Fu-Chun and Çakmak, İsmail and McGrath, Steve P. and Zhang, Fu-Suo and Zou, Chun-Qin (2012) Grain and shoot zinc accumulation in winter wheat affected by nitrogen management. Plant and Soil, 361 (1-2). pp. 153-163. ISSN 0032-079X (Print) 1573-5036 (Online)

Yavuz, Ahmet Sinan and Özer, Buğra and Sezerman, Uğur (2012) Pattern recognition for subfamily level classification of GPCRs using motif distillation and distinguishing power evaluation. In: 7th IAPR International Conference (PRIB 2012), Tokyo, Japan

Yılancıoğlu, Kaan and Çetiner, Selim (2012) Rediscovery of historical vitis vinifera varieties from South Anatolia region by using amplified fragment lenght polymorphism and simple sequence repeat dna fingerprinting methods. (Submitted)

Yılmaz, Özlem and Öztürk, Levent and Altıntaş, Gamze and Türkan, İsmail and Çakmak, İsmail (2012) Kükürt beslenmesinin, buğdayda (Triticum turgidum, Poaceae) vejetatif dönemde çinko absorpsiyonu ve taşınmasına etkilerinin araştırılması. In: 21. Ulusal Biyoloji Kongresi, Ege Üniversitesi, İzmir

Zhang, Yue-Qiang and Sun, Yi-Xiang and Ye, You-Liang and Karim, Md. Rezaul and Xue, Yan-Fang and Yan, Peng and Meng, Qing-Feng and Cui, Zhen-Ling and Çakmak, İsmail and Zhang, Fu-Suo and Zou, Chun-Qin (2012) Zinc biofortification of wheat through fertilizer applications in different locations of China. Field Crops Research, 125 . pp. 1-7. ISSN 0378-4290

Zou, C. Q. and Zhang, Y. Q. and Rashid, A. and Ram, H. and Savasli, E. and Arısoy, R. Z. and Ortiz-Monasterio, I. and Simunji, S. and Wang, Z. H. and Sohu, V. and Hassan, M. and Kaya, Y. and Önder, O. and Lungu, O. and Yaqub Mujahid, M. and Joshi, A. K. and Zelenskiy, Y. and Zhang, F. S. and Çakmak, İsmail (2012) Biofortification of wheat with zinc through zinc fertilization in seven countries. Plant and Soil, 361 (1-2). pp. 119-130. ISSN 0032-079X (Print) 1573-5036 (Online)

2011

Açıksöz, Seher Bahar and Öztürk, Levent and Gökmen, Özay Özgür and Roemheld, Volker and Çakmak, İsmail (2011) Effect of nitrogen on root release of phytosiderophores and root uptake of Fe(III)-phytosiderophore in Fe-deficient wheat plants. Physiologia Plantarum, 142 (3). pp. 287-296. ISSN 0031-9317

Açıksöz, Seher Bahar and Yazıcı, Mustafa Atilla and Öztürk, Levent and Çakmak, İsmail (2011) Biofortification of wheat with iron through soil and foliar application of nitrogen and iron fertilizers. Plant and Soil (SI), 349 (1-2). pp. 215-225. ISSN 0032-079X (print) ; 1573-5036 (online)

Apaydın, Serkan Mehmet and Çatay, Bülent and Patrick, Nicholas and Donald, Bruce R. (2011) NVR-BIP: nuclear vector replacement using binary integer programming for NMR structure-based assignments. The Computer Journal, 54 (5). pp. 708-716. ISSN 0010-4620

Aydın, Mert (2011) Biochemical and biophysical characterization of mutant T. durum metallothionein. [Thesis]

Aydın, Zafer and Altunbaşak, Yücel and Erdoğan, Hakan (2011) Bayesian models and algorithms for protein beta-sheet prediction. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8 (2). pp. 395-409. ISSN 1545-5963

Bakır-Güngör, Burcu and Sezerman, Uğur (2011) A new methodology to associate SNPs with human diseases according to their pathway related context. PLoS One, 6 (10). ISSN 1932-6203

Bayram Akçapınar, Günseli and Gül, Özgür and Sezerman, Uğur (2011) Effect of codon optimization on the expression of trichoderma reesei endoglucanase 1 in pichia pastoris. Biotechnology Progress, 27 (5). pp. 1257-1263. ISSN 8756-7938

Brkljacic, Jelena and Grotewold, Erich and Scholl, Randy and Mockler, Todd and Garvin, David F. and Vain, Philippe and Brutnell, Thomas and Sibout, Richard and Bevan, Michael and Budak, Hikmet and Caicedo, Ana L. and Gao, Caixia and Gu, Yong and Hazen, Samuel P. and Holt, Ben F. and Hong, Shin-Young and Jordan, Mark and Manzaneda, Antonio J. and Mitchell-Olds, Thomas and Mochida, Keiichi and Mur, Luis A. J. and Park, Chung-Mo and Sedbrook, John and Watt, Michelle and Zheng, Shao Jian and Vogel, John P. (2011) Brachypodium as a model for the grasses: today and the future. Plant Physiology, 157 (1). pp. 3-13. ISSN 0032-0889

Broadley, Martin and Brown, Patrick and Çakmak, İsmail and Ma, Jian Feng and Rengel, Zed and Zhao, Fangjie (2011) Beneficial elements. In: Marschner, Petra, (ed.) Marschner's Mineral Nutrition of Higher Plants. Academic Press, pp. 249-268. ISBN 0123849055 ; 9780123849052

Broadley, Martin and Brown, Patrick and Çakmak, İsmail and Rengel, Zed and Zhao, Fangjie (2011) Function of nutrients: micronutrients. In: Marschner, Petra, (ed.) Marschner's Mineral Nutrition of Higher Plants. Academic Press, pp. 191-248. ISBN 0123849055 ; 9780123849052

Budak, Hikmet and Akpınar, Anı (2011) Dehydration stress-responsive miRNA in brachypodium distachyon: evident by genome-wide screening of microRNAs expression. OMICS: A Journal of Integrative Biology, 15 (11). pp. 791-799. ISSN 1536-2310

Cooper, Julia and Sanderson, Roy and Çakmak, İsmail and Öztürk, Levent and Shotton, Peter and Carmichael, Andrew and Haghighi, Reza Sadrabadi and Tetard-Jones, Catherine and Volakakis, Nikos and Eyre, Mick and Leifert, Carlo (2011) Effect of organic and conventional crop rotation, fertilization, and crop protection practices on metal contents in wheat (triticum aestivum). Journal of Agricultural and Food Chemistry, 59 (9). pp. 4715-4724. ISSN 0021-8561

Çakmak, İsmail (2011) Breeding, transformation and physiological strategies for the development ofwheat with high zinc and iron grain concentration. In: Bonjean, Alain, (ed.) The World Wheat Book. Lavoisier, France. ISBN 978-2-7430-1102-4 (Accepted/In Press)

Çetiner, Selim (2011) Biyogüvenlik nedir? ne değildir? Tarla Sera Dergisi . pp. 88-91. ISSN 1309-9116

Çetiner, Selim (2011) Bizde ziraat eğitimi. Tarla Sera Dergisi . pp. 52-54. ISSN 1309-9116

Çetiner, Selim (2011) Fruktoz nedir? ne değildir? Tarla Sera Dergisi . pp. 14-17. ISSN 1309-9116

Çetiner, Selim (2011) Hocaların kafası neden karışık? Tarla Sera Dergisi . pp. 14-16. ISSN 1309-9116

Çetiner, Selim (2011) Organiği kimler yiyor? Tarla Sera Dergisi . pp. 14-17. ISSN 1309-9116

Çetiner, Selim (2011) Organik nedir? ne değildir? Tarla Sera Dergisi . pp. 14-16. ISSN 1309-9116

Çetiner, Selim (2011) Organik tarım dünyayı besleyebilir mi? Tarla Sera Dergisi . pp. 64-67. ISSN 1309-9116

Çetiner, Selim (2011) Organik tarım nedir? ne değildir? Yemek ve Kültür, 25 . pp. 110-115. ISSN 1305-2780

Çetiner, Selim (2011) Organik ürünler daha güvenli, daha sağlıklı mı? Tarla Sera Dergisi . pp. 66-69. ISSN 1309-9116

Çetiner, Selim (2011) Organik ürünler daha lezzetli, daha besleyici mi? Tarla Sera Dergisi . pp. 18-21. ISSN 1309-9116

Çetiner, Selim (2011) Organik ürünler doğal mı? değil mi? Tarla Sera Dergisi . pp. 100-102. ISSN 1309-9116

Çetiner, Selim (2011) Yeşil ekonomi, sürdürülebilir Kalkınma vs... Tarla Sera Dergisi . pp. 80-82. ISSN 1309-9116

Çobanoğlu, Murat Can and Saygın, Yücel and Sezerman, Uğur (2011) Classification of GPCRs using family specific motifs. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8 (6). pp. 1495-1508. ISSN 1545-5963

Çokol, Murat and Chua, Hon Nian and Taşan, Murat and Mutlu, Beste and Weinstein, Zohar Bat-El and Suzuki, Yo and Nergiz, Mehmet E. and Costanzo, Michael and Baryshnikova, Anastasia and Giaever, Guri and Nislow, Corey and Myers, Chad L. and Andrews, Brenda J. and Boone, Charles and Roth, Frederick P. (2011) Systematic exploration of synergistic drug pairs. Molecular Systems Biology, 7 . ISSN 1744-4292

Durası, İlknur Melis and Dağ, Uğur and Güngör, Burcu Bakır and Erdoğan, Burcu and Kurnaz, Işıl Aksan and Sezerman, Uğur (2011) Identification of transcription factor binding sites in promoter databases. In: 6th International Symposium on Health Informatics and Bioinformatics, (HIBIT 2011), Izmir, Turkey

Durmaz, Emel and Çoruh, Ceyda and Dinler, Gizem and Grusak, Micheal A. and Peleg, Zvika and Saranga, Yashua and Fahima, Tzion and Yazıcı, Mustafa Atilla and Öztürk, Levent and Çakmak, İsmail and Budak, Hikmet (2011) Expression and cellular localization of ZIP1 transporter under zinc deficiency in wild emmer wheat. Plant Molecular Biology Reporter, 29 (3). pp. 582-596. ISSN 0735-9640

Erdoğan, Halit and Apaydın, Mehmet Serkan (2011) Incorporating hadamac experiment into NMR structure-based assignments. In: 6th International Symposium on Health Informatics and Bioinformatics (HIBIT), Izmir, Turkey

Erenoğlu, Emin Bülent and Kutman, Barış Ümit and Ceylan, Yasemin and Yıldız, Bahar and Çakmak, İsmail (2011) Improved nitrogen nutrition enhances root uptake, root-to-shoot translocation and remobilization of zinc (65Zn) in wheat. New Phytologist, 189 (2). pp. 438-448. ISSN 0028-646X

Gözüaçık, Devrim (2011) Autophagy, cell death and disease. In: 4th International Congress of Molecular Medicine, Istanbul, Turkey

Gözüaçık, Devrim (2011) Otofaji analiz yöntemleri ve uygulama aşamaları (Autophagy analysis techniques and applications). In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) Hücre Ölümü Araştırma Teknikleri. Dokuz Eylul University Press, Izmir, pp. 129-141. ISBN 978-975-441-349-6

Gözüaçık, Devrim (2011) Otofaji ve sinyal yolakları (Autophagy and signaling pathways). In: Koçtürk, Semra and Vatansever, H. Seda, (eds.) Hücre Ölümü Araştırma Teknikleri. Dokuz Eylul University Press, Izmir, pp. 53-61. ISBN 978-975-441-349-6

Kabaha, Khaled and Taralp, Alpay and Çakmak, İsmail and Öztürk, Levent (2011) Accelerated hydrolysis method to estimate the amino acid content of wheat (Triticum durum Desf.) flour using microwave irradiation. Journal of Agricultural and Food Chemistry (Sp. Iss. SI), 59 (7). pp. 2958-2965. ISSN 0021-8561

Kantar, Melda and Lucas, Stuart J. and Budak, Hikmet (2011) Drought stress: molecular genetics and genomics approaches. Advances in Botanical Research, 57 . pp. 445-493. ISSN 0065-2296

Kantar, Melda and Lucas, Stuart J. and Budak, Hikmet (2011) MiRNA expression patterns of triticum dicoccoides in response to shock drought stress. Planta, 233 (3). pp. 471-484. ISSN 0032-0935 (Print) 1432-2048 (Online)

Korkut, Senay Vural and Altınışık, Başak Çelik and Sezerman, Uğur and Meydan, Cem (2011) Cloning of hordeum spontenaum genes which are expressed upon zinc deficiency using suppressed sub-stractive hybridization method. In: European Biotechnology Congress, Istanbul, Turkey

Koşar, Ali and Şeşen, Muhsincan and Oral, Özlem and İtah, Zeynep and Gözüaçık, Devrim (2011) Bubbly cavitating flow generation and investigation of its erosional nature for biomedical applications. IEEE Transactions on Biomedical Engineering, 58 (5). pp. 1337-1346. ISSN 0018-9294

Kutman, Barış Ümit and Yıldız, Bahar and Çakmak, İsmail (2011) Effect of nitrogen on uptake, remobilization and partitioning of zinc and iron throughout the development of durum wheat. Plant and Soil, 342 (1-2). pp. 149-164. ISSN 0032-079X (Print) 1573-5036 (Online)

Kutman, Barış Ümit and Yıldız, Bahar and Çakmak, İsmail (2011) Improved nitrogen status enhances zinc and iron concentrations both in the whole grain and the endosperm fraction of wheat. Journal of Cereal Science, 53 (1). pp. 118-125. ISSN 0733-5210

Levi, Avishag and Paterson, Andrew H. and Çakmak, İsmail and Saranga, Yehoshua (2011) Metabolite and mineral analyses of cotton near-isogenic lines introgressed with QTLs for productivity and drought-related traits. Physiologia Plantarum, 141 (3). pp. 265-275. ISSN 0031-9317

Lucas, Stuart J. and Doğan, Esen and Budak, Hikmet (2011) TMPIT1 from wild emmer wheat: first characterisation of a stress-inducible integral membrane protein. Gene, 483 (1-2). pp. 22-28. ISSN 0378-1119

Lucas, Stuart J. and Durmaz, Emel and Akpınar, Bala Anı and Budak, Hikmet (2011) The drought response displayed by a DRE-binding protein from Triticum dicoccoides. Plant Physiology and Biochemistry, 49 (3). pp. 346-351. ISSN 0981-9428

Mahmoud, Amer Faiz Ahmed and Budak, Hikmet (2011) First report of charcoal rot caused by macrophomina phaseolina in sunflower in Turkey. Plant Disease, 95 (2). pp. 223-223. ISSN 0191-2917

Meydan, Cem and Sezerman, Uğur (2011) Short-term HIV therapy response prediction using sequence information. In: 6th International Symposium on Health Informatics and Bioinformatics, (HIBIT 2011), Izmir, Turkey

Öz Arslan, Devrim and Korkmaz, Gözde and Gözüaçık, Devrim (2011) Autophagy: a cellular stres and a cell death mechanism (Otofaji: bir hücresel stres yanıtı ve ölüm mekanizması). Acıbadem Üniversitesi Sağlık Bilimleri Dergisi , 2 (4). pp. 184-194. ISSN 1309-470X

Prom-u-thai, C. and Huang, L. and Çakmak, İsmail and Rerkasem, B. (2011) Simultaneous fortification of iron and zinc in parboiled rice kernel. ScienceAsia, 37 (4). pp. 296-302. ISSN 1513-1874

Seidl-Seiboth, Verena and Gruber, Sabine and Sezerman, Uğur and Schwecke, Torsten and Albayrak, Aydın and Neuhof, Torsten and von Doehren, Hans and Baker, Scott E. and Kubicek, Christian P. (2011) Novel hydrophobins from trichoderma define a new hydrophobin subclass: protein properties, evolution, regulation and processing. Journal of Molecular Evolution, 72 (4). pp. 339-351. ISSN 0022-2844

Sezer, Deniz and Sigurdsson, Snorri Th. (2011) Simulating electron spin resonance spectra of macromolecules labeled with two dipolar-coupled nitroxide spin labels from trajectories. Physical Chemistry Chemical Physics, 13 (28). pp. 12785-12797. ISSN 1463-9076

Sogut, İbrahim and Hatipoğlu, İbrahim and Serhatlı, Müge and Çevik, Şafak Işıl and Durali, Deniz and Başalp, Aynur (2011) Cryopreservation of spleen and lymph nodes as a source of mononuclear cells to be used for the development of monoclonal antibody producing hybridoma cells. Cryoletters, 32 (3). pp. 266-274. ISSN 0143-2044

Tiber, Pınar and Orun, Oya and Nacar, Cevdet and Sezerman, Uğur and Severcan, Feride and Severcan, Mete and Matagne, André and Kan, Beki (2011) Structural characterization of recombinant bovine Go alpha by spectroscopy and homology modeling. Spectroscopy, 26 (4-5). pp. 213-229. ISSN 0712-4813

Toprak, Erdal (2011) Evolutionary paths to strong antibiotic resistance under dynamically sustained drug stress. (Accepted/In Press)

Ükelgi, Nurten (2011) Isolation, identification and characterization of wine yeast species from grapes of three different vineyards in Turkey. [Thesis]

Wicker, Thomas and Mayer, Klaus F. X. and Gundlach, Heidrun and Martis, Mihaela and Steuernagel, Burkhard and Scholz, Uwe and Simkova, Hana and Kubalakova, Marie and Choulet, Frederic and Taudien, Stefan and Platzer, Matthias and Feuillet, Catherine and Fahima, Tzion and Budak, Hikmet and Dolezel, Jaroslav and Keller, Beat and Stein, Nils (2011) Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell , 23 (5). pp. 1706-1718. ISSN 1040-4651

2010

Çakmak, İsmail (2010) Potassium for better crop production and quality. [Volumes Edited / Special Issues]

Abdelgany Hamed, Ahmed Mohamed Elghareb (2010) Molecular and morphophysiological approaches for a better understanding of drought resistance mechanisms in some wheat genotypes. [Thesis]

Akçay, İzzet Mehmet (2010) Transcriptional regulation of IL-7R alpha gene in T lymphocytes. [Thesis]

Akfırat, F. S. and Aydın, Y. and Ertuğrul, F. and Hasancebi, S. and Budak, Hikmet and Akan, K. and Mert, Z. and Bolat, N. and Uncuoğlu, A. A. (2010) A microsatellite marker for yellow rust resistance in wheat. Cereal Research Communications, 38 (2). pp. 203-210. ISSN 0133-3720 (Print) 1788-9170 (Online)

Albayrak, Aydın and Otu, Hasan Hüseyin and Sezerman, Uğur (2010) Clustering of protein families into functional subtypes using relative complexity measure with reduced amino acid alphabets. BMC Bioinformatics, 11 . ISSN 1471-2105

Altıntaş, Ayşegul (2010) Effects of glyphosate on brachypodium distachyon. [Thesis]

Atasever, Belkıs and Ülküseven, Bahri and Bal-Demirci, Tülay and Erdem-Kuruca, Serap and Solakoğlu, Zeynep (2010) Cytotoxic activities of new iron(III) and nickel(II) chelates of some S-methyl-thiosemicarbazones on K562 and ECV304 cells. Investigational New Drugs, 28 (4). pp. 421-432. ISSN 0167-6997 (Print) 1573-0646 (Online)

Bakar, Mine (2010) Construction of plant gene expression vectors carrying ath-Mir393a gene and its target gene AFB3. [Thesis]

Broadley, Martin R. and Lochlainn, Seosamh O. and Hammond, John P. and Bowen, Helen C. and Çakmak, İsmail and Eker, Selim and Erdem, Haul and King, Graham J. and White, Philip J. (2010) Shoot zinc (Zn) concentration varies widely within Brassica oleracea L. and is affected by soil Zn and phosphorus (P) levels. Journal of Horticultural Science & Biotechnology, 85 (5). pp. 375-380. ISSN 1462-0316

Budak, Hikmet (2010) Plant genetic reseources: effective utilization. In: Call, A., (ed.) Encyclopedia of Agricultural, Food and Biological Engineering. Taylor & Francis, USA. (Accepted/In Press)

Castillo, A. and Budak, Hikmet and Martin, A. C. and Dorado, G. and Börner, A. and Röder, M. and Hernandez, P. (2010) Interspecies and intergenus transferability of barley and wheat D-genome microsatellite markers. Annals of Applied Biology, 156 (3). pp. 347-356. ISSN 0003-4746 (Print) 1744-7348 (Online)

Cebeci Yalçınkaya, Özge (2010) Molecular analysis of glyphosate and osmotic stress responsive genes. [Thesis]

Chatzav, Merav and Peleg, Zvi and Öztürk, Levent and Yazıcı, Mustafa Atilla and Fahima, Tzion and Çakmak, İsmail and Saranga, Yehoshua (2010) Genetic diversity for grain nutrients in wild emmer wheat: potential for wheat improvement. Annals of Botany, 105 (7). pp. 1211-1220. ISSN 0305-7364 (Print) 1095-8290 (Online)

Choulet, Frederic and Wicker, Thomas and Rustenholz, Camille and Paux, Etienne and Salse, Jerome and Leroy, Philippe and Schlub, Stephane and Le Paslier, Marie-Christine and Magdelenat, Ghislaine and Gonthier, Catherine and Couloux, Arnaud and Budak, Hikmet and Breen, James and Pumphrey, Michael and Liu, Sixin and Kong, Xiuying and Jia, Jizeng and Gut, Marta and Brunel, Dominique and Anderson, James A. and Gill, Bikram S. and Appels, Rudi and Keller, Beat and Feuillet, Catherine (2010) Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell , 22 (6). pp. 1686-1701. ISSN 1040-4651

Çakmak, İsmail and Kalaycı, M. and Kaya, Y. and Torun, A. A. and Aydın, N. and Wang, Y. and Arısoy, Z. and Erdem, H. and Yazıcı, A. and Gökmen, O. and Öztürk, Levent and Horst, W. J. (2010) Biofortification and localization of zinc in wheat grain. Journal of Agricultural and Food Chemistry, 58 (16). pp. 9092-9102. ISSN 0021-8561

Çalık, Aslı (2010) Optimization of the production of trichoderma reesei endoglucanase I in pichia pastoris. [Thesis]

Çalpur, Mehmet Çağrı and Erdoğan, Hakan and Çatay, Bülent and Donald, Bruce R. and Apaydın, Mehmet Serkan (2010) Developing a scoring function for NMR structure-based assignments using machine learning. In: 25th International Symposium on Computer and Information Sciences, London, UK

Çetiner, Selim (2010) Biyoçeşitlilik nedir? ne değildir? Tarla Sera Dergisi . pp. 14-16. ISSN 1309-9116

Çetiner, Selim (2010) Biyogüvenlik kanunu ne getiriyor? ne götürüyor? Tarla Sera Dergisi . pp. 106-108. ISSN 1309-9116

Çetiner, Selim (2010) Genetiği değiştirilmiş organizma (GDO) nedir? sorular ve yanıtlar-1. Uluslararası Ekonomik Sorunlar Dergisi, 10 (38). pp. 40-54. ISSN 1306-8431 (Print) 1306-844X (Online)

Çetiner, Selim (2010) Genetiği değiştirilmiş organizma (GDO) nedir? sorular ve yanıtlar-2. Uluslararası Ekonomik Sorunlar Dergisi, 10 (39). pp. 13-26. ISSN 1306-8431 (Print) 1306-844X (Online)

Çetiner, Selim (2010) Tarihsel süreçte genetiği değiştirilmiş ürünler. Yemek ve Kültür, 21 . pp. 86-98. ISSN 1305-2780

Çetiner, Selim (2010) Tohum gen bankası üzerine düşünceler. Tarla Sera Dergisi . pp. 64-67. ISSN 1309-9116

Dinçer, Sedef (2010) Aspergillus niger as an expression system for heterologous expression of ROL and BTL2. [Thesis]

Dizkırıcı, Ayten and Kaya, Zeki and Güren, H. Elif and Budak, Hikmet (2010) Barley germplasms developed for scald disease resistance exhibited a high level of genetic diversity based on SRAP markers. Turkish Journal of Biology, 34 (3). pp. 271-279. ISSN 1300-0152

Doğan, Esen (2010) Cloning and characterization of a novel abscisic acid (aba)-induced hva22-like protein from triticum turgidum spp. dicoccoides in response to drought stress. [Thesis]

Erdoğan, Halit and Apaydın, Serkan Mehmet (2010) Using amino acid typing to improve the accuracy of NMR structure based assignments. In: 5th International Symposium on Health Informatics and Bioinformatics (HIBIT), Antalya, Türkiye

Gomez Becerra, Hugo Ferney and Abugalieva, Aigul and Morgounov, Alexei and Abdullayev, K. and Bekenova, L. and Yessimbekova, M. and Sereda, G. and Shpigun, S. and Tsygankov, V. and Zelenskiy, Yu and Javier Pena, Roberto and Çakmak, İsmail (2010) Phenotypic correlations, G x E interactions and broad sense heritability analysis of grain and flour quality characteristics in high latitude spring bread wheats from Kazakhstan and Siberia. Euphytica, 171 (1). pp. 23-38. ISSN 0014-2336 (Print) 1573-5060 (Online)

Gomez Becerra, Hugo Ferney and Erdem, H. and Yazıcı, A. and Tutuş, Yusuf and Torun, B. and Öztürk, Levent and Çakmak, İsmail (2010) Grain concentrations of protein and mineral nutrients in a large collection of spelt wheat grown under different environments. Journal of Cereal Science, 52 (3). pp. 342-349. ISSN 0733-5210

Gomez Becerra, Hugo Ferney and Yazıcı, Mustafa Atilla and Öztürk, Levent and Budak, Hikmet and Peleg, Zvi and Morgounov, Alexey and Fahima, Tzion and Saranga, Yehoshua and Çakmak, İsmail (2010) Genetic variation and environmental stability of grain mineral nutrient concentrations in Triticum dicoccoides under five environments. Euphytica, 171 (1). pp. 39-52. ISSN 0014-2336 (Print) 1573-5060 (Online)

Gül, Özgür (2010) Protein engineering of rhizopus oryzae lipase for improved thermostability. [Thesis]

Kaçar, Y. A. and Biçen, B. and Varol, İ. and Mendi, Y. Y. and Serçe, S. and Çetiner, Selim (2010) Gelling agents and culture vessels affect in vitro multiplication of banana plantlets. Genetics and Molecular Research, 9 (1). pp. 416-424. ISSN 1676-5680

Kantar, Melda and Ünver, Turgay and Budak, Hikmet (2010) Regulation of barley miRNAs upon dehydration stress correlated with target gene expression. Functional and Integrative Genomics, 10 (4). pp. 493-507. ISSN 1438-793X (Print) 1438-7948 (Online)

Kaplan Türköz, Burcu and Şeşen, Muhsincan and Taralp, Alpay and Koşar, Ali (2010) Effect of hydrodynamic bubbly cavitation on lysozyme structure. In: 6. Nanobilim ve Nanoteknoloji Konferansı (NanoTR-VI), Çeşme, İzmir

Kutman, Barış Ümit (2010) Roles of nitrogen and zinc nutrition in biofortification of wheat grain. [Thesis]

Kutman, U. Barış and Yıldız, Bahar and Öztürk, Levent and Çakmak, İsmail (2010) Biofortification of durum wheat with zinc through soil and foliar applications of nitrogen. Cereal Chemistry, 87 (1). pp. 1-9. ISSN 0009-0352

Kütük, Özgür and Temel, Sehime Gülsun and Tolunay, Sahsine and Başağa, Hüveyda (2010) Aven blocks DNA damage-induced apoptosis by stabilising Bcl-xL. European Journal of Cancer, 46 (13). pp. 2494-2505. ISSN 0959-8049

Levent, Elif (2010) The role of bax in pmc-f induced cell death mechanism in HCT116 colon carcinoma cell lines. [Thesis]

Mahmoud, Amer Faiz Ahmed (2010) Molecular and biological investigations of damping-off and charcoal-rot diseases in sunflower. [Thesis]

Mehmetoglu, Tuğba (2010) Genomic and proteomic analysis of chemoresistance in breast cancer cell lines: MCF-7 and MDA-MB-231. [Thesis]

Mendi, Yeşim Yalçın and Eldoğan, Selay and Gutakev, Rafael and İpek, Muzaffer and Çürük, Pembe and Çetiner, Selim (2010) Regeneration and histological analysis of snake melon (Cucumis melo var. flexuosus (L.) Naudin) by direct organogenesis. Turkish Journal of Agriculture and Forestry, 34 (4). pp. 309-317. ISSN 1300-011X

Meydan, Cem and Sezerman, Uğur (2010) Biomarker discovery for toxicity. Neurocomputing (Sp. Iss. SI), 73 (13-15). pp. 2384-2393. ISSN 0925-2312

Morgounov, A. and Zykin, V. and Belan, I. and Roseeva, L. and Zelenskiy, Yu and Gomez Becerra, Hugo Ferney and Budak, Hikmet and Bekes, F. (2010) Genetic gains for grain yield in high latitude spring wheat grown in Western Siberia in 1900-2008. Field Crops Research, 117 (1). pp. 101-112. ISSN 0378-4290

Negre-Salvayre, Anne and Auge, Nathalie and Ayala, Victoria and Başağa, Hüveyda and Boada, Jordi and Brenke, Rainer and Chapple, Sarah and Cohen, Guy and Feher, Janos and Grune, Tilman and Lengyel, Gabriella and Mann, Giovanni E. and Pamplona, Reinald and Poli, Giuseppe and Portero-Otin, Manuel and Riahi, Yael and Salvayre, Robert and Sasson, Shlomo and Serrano, Jose and Shamni, Ofer and Siems, Werner and Siow, Richard C. M. and Wiswedel, Ingrid and Zarkovic, Kamelija and Zarkovic, Neven (2010) Pathological aspects of lipid peroxidation. Free Radical Research (Sp. Iss. SI), 44 (10). pp. 1125-1171. ISSN 1071-5762

Özdemir Özgentürk, Nehir and Oruç, Fatma and Sezerman, Uğur and Küçükural, Alper and Vural Korkut, Şenay and Toksöz, Feriha and Un, Cemal (2010) Generation and analysis of expressed sequence tags from olea europaea L. Comparative and Functional Genomics . ISSN 1531-6912

Prom-u-thai, Chanakan and Rerkasem, Benjavan and Çakmak, İsmail and Huang, Longbin (2010) Zinc fortification of whole rice grain through parboiling process. Food Chemistry, 120 (3). pp. 858-863. ISSN 0308-8146

Qabaha, Khaled Ibraheem Saleh (2010) Development and optimization of a microwave-assisted protein hydrolysis method to permit amino acid profiling of cultivated and wild wheats and to relate the amino acid to grain mineral concentrations. [Thesis]

Uzbaş, Fatma (2010) Trichoderma reesei as an expression system for homologous production of individual cellulases. [Thesis]

Ünver, Turgay and Bakar, Mine and Shearman, Robert C. and Budak, Hikmet (2010) Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application. Molecular Genetics and Genomics, 283 (4). pp. 397-413. ISSN 1617-4615 (Print) 1617-4623 (Online)

Vogel, John P. and Garvin, David F. and Mockler, Todd J. and Schmutz, Jeremy and Rokhsar, Dan and Bevan, Michael W. and Barry, Kerrie and Lucas, Susan and Harmon-Smith, Miranda and Lail, Kathleen and Tice, Hope and Grimwood, Jane and McKenzie, Neil and Huo, Naxin and Gu, Yong Q and Lazo, Gerard R. and Anderson, Olin D. and You, Frank M. and Luo, Ming-Cheng and Dvorak, Jan and Wright, Jan and Febrer, Melanie and Idziak, Dominika and Hasterok, Robert and Lindquist, Scott A. and Wang, Mei and Fox, Samuel E. and Priest, Henry D. and Filichkin, Sergei A. and Givan, Scott A. and Bryant, Douglas W. and Chang, Jeff H. and Wu, Haiyan and Wu, Wei and Hsia, An-Ping and Schnable, Patrick S. and Kalyanaraman, Anantharaman and Baarbazuk, Brad and Michael, Todd P. and Hazen, Samuel P. and Bragg, Jennifer N. and Laudencia-Chingcuanco, Debbie and Weng, Yiqun and Haberer, Georg and Spannagl, Mianuel and Mayer, Klaus and Rattei, Thomas and Mitros, Therese and Lee, Sang-Jik and Rose, Jocelyn K. C. and Mueller, Lukas A. and York, Thomas L. and Wicker, Thomas and Buchmann, Jan P. and Tanskanen, Jaakko and Schulman, Alan H. and Gundlach, Heidrun and de Oliveira, Antonio Costa and Maia, Luciano da C. and Belknap, William and Jiang, Ning and Lai, Jinsheng and Zhu, Liucun and Ma, Jianxin and Sun, Cheng and Pritham, Ellen and Salse, Jerome and Murat, Florent and Abrouk, Michael and Bruggmann, Remy and Messing, Joachim and You, Frank M. and Fahlgren, Noah and Sullivan, Christopher M. and Carrington, James C. and Chapman, Elisabeth J. and May, Greg D. and Zhai, Jixian and Ganssmann, Matthias and Gurazada, Sai Guna Ranjan and German, Marcelo and Meyers, Blake C. and Green, Pamela J. and Tyler, Ludmila and Wu, Jiajie and Lazo, Gerard R. and Thomson, James and Hazen, Samuel P. and Chen, Shan and Scheller, Henrik V. and Harholt, Jesper and Ulvskov, Peter and Kimbrel, Jeffrey A. and Chang, Jeff H. and Bartley, Laura E. and Cao, Peijian and Jung, Ki-Hong and Sharma, Manoj K. and Vega-Sanchez, Miguel and Ronald, Pamela and Dardick, Christopher D. and De Bodt, Stefanie and Verelst, Wim and Inze, Dirk and Heese, Maren and Schnittger, Arp and Yang, Xiaohan and Kalluri, Udaya C. and Tuskan, Gerald A. and Hua, Zhihua and Vierstra, Richard D. and Cui, Yu and Ouyang, Shuhong and Sun, Qixin and Liu, Zhiyong and Yılmaz, Alper and Grotewold, Erich and Sibout, Richard and Hematy, Kian and Mouille, Gregory and Hoefte, Herman and Pelloux, Jerome and O'Connor, Devin and Schbnable, James and Rowe, Scott and Harmon, Frank and Cass, Cynthia L. and Sedbrook, John C. and Byrne, Mary E. and Walsh, Sean and Higgins, Janet and Li, Pinghua and Brutnell, Thomas and Ünver, Turgay and Budak, Hikmet and Belcram, Harry and Charles, Mathieu and Chalhoub, Boulos and Baxter, Ivan (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 463 (7282). pp. 763-768. ISSN 0028-0836

2009

Mitou, Geraldine and Budak, Hikmet and Gözüaçık, Devrim (2009) Techniques to study autophagy in plants. International Journal of Plant Genomics , 2009 . pp. 1-14. ISSN 1687-5370

Budak, Hikmet (2009) Wet lab tools widely used in plant genomics. [Volumes Edited / Special Issues]

Ahn, Joo-Myung and Hwang, Ee Taek and Kim, Byoung Chan and Kolkar Mohammed, Javed Hussain Niazi and Gu, Man Bock (2009) Prediction and classification of the modes of genotoxic actions using bacterial biosensors and cell array chip. In: Asia Pacific Biochemical Engineering Conference (APBioChEC'09), Kobe, Japan

Aksoy, S. and Hekimbaşı, T. and Eyidoğan, F. and Öktem, H. and Budak, Hikmet (2009) Application of fiber-fish methods for transgene analysis in transgenic plants. In: 7th European Cytogenetics Conference, Stockholm, Sweden

Aktürk, Anıl and Yeşilırmak, Filiz and Sayers, Zehra (2009) Investigation of structural features of mutant Metallothioneins I: Hingeless T. durum metallothionein (Mutant metallotionin proteininin yapısal özellikleri: köprüsüz T. durum metallotionini). In: 14th Biomedical Engineering Conference (BIYOMUT 2009), Izmir, Turkey

Apaydın, Serkan Mehmet and Çatay, Bülent and Patrick, Nicholas and Donald, Bruce R. (2009) NVR-BIP: nuclear vector replacement using binary integer programming for NMR structure-based assignments. In: 24th International Symposium on Computer and Information Sciences (ISCIS09), North Cyprus

Arısan, Elif Damla (2009) Molecular mechanism of drug induced apoptosis & chemoresistance in estrogen receptor alpha +/- breast cancer cell lines: mcf-7 and mda-mb-231. [Thesis]

Atasever, Belkıs and Kuruca, S. Erdem and Karakas, Z. and Erman, Batu and Ergen, A. and Isbir, T. and Günal, G. (2009) Phenotypic and functional studies of natural killer (NK) cell subsets in beta-thalassemia major patients. In: 14th Annual Meeting of the European-Hematology-Association, Berlin, Germany

Ateş, Yıldız Özlem (2009) Effect of reactive oxygen species in cisplatin-induced apoptotic response of hct 116 colon carcinoma cells. [Thesis]

Bakış, Yasin and Sezerman, Uğur and Babaç, M. Tekin and Meydan, Cem (2009) Optimization of morphological data in numerical taxonomy analysis using genetic algorithms feature selection method. In: 11th Genetic and Evolutionary Computation Conference, GECCO 2009, Montreal, Québec, Canada

Bodur, Çağrı and Kütük, O. and Poli, G. and Başağa, Hüveyda (2009) Role of Bcl-2 family members in 4-hydroxynonenal (HNE) mediated apoptosis. In: Annual Meeting of the Society-for-Free-Radicals-Research-Europe, Rome, Italy

Bodur, Çağrı and Kütük, Özgür and Poli, G. and Başağa, Hüveyda (2009) Role of Bcl-2 protein family members in 4-hydroxynonenal mediated apoptosis. In: Europe Meeting 2009 of the Society-for-Free-Radicals-Research, Rome, Italy

Cebeci Yalçınkaya, Özge and Budak, Hikmet (2009) Global expression patterns of three festuca species exposed to different doses of glyphosate using the affymetrix geneChip wheat genome array. Comparative and Functional Genomics, 2009 . ISSN 1531-6912

Çakıcı, Serdar and Sümengen, Selçuk and Sezerman, Uğur and Balcısoy, Selim (2009) DockPro: a vr-based tool for protein-protein docking problem. International Journal of Virtual Reality, 8 (2). pp. 19-23.

Çakmak, İsmail (2009) Biofortification of cereal grains with zinc through fertilizer strategy. In: 19th International Congress of Nutrition, Bangkok, Thailand

Çakmak, İsmail (2009) Enrichment of fertilizers with zinc: an excellent investment for humanity and crop production in India. Journal of Trace Elements in Medicine and Biology, 23 (4). pp. 281-289. ISSN 0946-672X

Çakmak, İsmail and Pfeiffer, Wolfgang H. and McClafferty, Bonnie (2009) Biofortification of durum wheat with zinc and iron. (Accepted/In Press)

Çakmak, İsmail and Yazıcı, M. Atilla and Tutuş, Yusuf and Öztürk, Levent (2009) Glyphosate reduced seed and leaf concentrations of calcium, manganese, magnesium, and iron in non-glyphosate resistant soybean. European Journal of Agronomy, 31 (3 Sp. Iss. SI). pp. 114-119. ISSN 1161-0301

Ergen, Zahide Neslihan and Budak, Hikmet (2009) Sequencing over 13 000 expressed sequence tags from six subtractive cDNA libraries of wild and modern wheats following slow drought stress. Plant Cell and Environment, 32 (3). pp. 220-236. ISSN 0140-7791

Erman, Batu (2009) Signaling by intrathymic cytokines, not T cell receptors, specifies CD8- lineage choice and promotes differentiation of cytotoxic-lineage T cells. (Accepted/In Press)

Filiz, E. and Özdemir, B. S. and Budak, F. and Vogel, J. P. and Tuna, M. and Budak, Hikmet (2009) Molecular, morphological, and cytological analysis of diverse Brachypodium distachyon inbred lines. Genome, 52 (10). pp. 876-890. ISSN 0831-2796

Filiz, Ertuğrul and Özdemir, Bahar Soğutmaz and Tuna, Metin and Budak, Hikmet (2009) Diploid brachypodium distachyon of Turkey: molecular and morphological analysis. In: 5th International Molecular Breeding of Forage and Turf, Sapporo, Japan

Hernlund, Emma and Kütük, Özgür and Başağa, Hüveyda and Linder, Stig and Panaretakis, Theocharis and Shoshan, Maria (2009) Cisplatin-induced nitrosylation of p53 prevents its mitochondrial translocation. Free Radical Biology and Medicine, 46 (12). pp. 1607-1613. ISSN 0891-5849

Karakas, Z. and Atasever, Belkıs and Kuruca, S. Erdem and Erman, Batu and Ergen, A. and Isbir, T. and Ağaoğlu, L. (2009) Natural killer activity and effect of IL-2 in patients with beta-thalassemia major. In: 14th Annual Meeting of the European-Hematology-Association, Berlin, Germany

Kısaayak Çollak, Filiz (2009) Cloning expression and purification of durum wheat metallothionein domains and structural modelling. [Thesis]

Küçükural, Alper (2009) Novel techniques for protein structure characterization using graph representation of proteins. [Thesis]

Kütük, Özgür and Arısan, Elif Damla and Tezil, Tuğsan and Shoshan, Maria C. and Başağa, Hüveyda (2009) Cisplatin overcomes Bcl-2-mediated resistance to apoptosis via preferential engagement of Bak: critical role of Noxa-mediated lipid peroxidation. Carcinogenesis, 30 (9). pp. 1517-1527. ISSN 0143-3334

Kütük, Özgür and Başağa, Hüveyda (2009) Apoptotic pathways in mitochondria. In: Preedy , Victor R., (ed.) Modern Insights Into Disease From Molecules to Man. UNSPECIFIED, USA. (Accepted/In Press)

Liv, Nalan (2009) An implementation of functionalized carbon nanotubes on optical biosensors. [Thesis]

Mendi, Yalçın Y. and Curuk, P. and Kocaman, E. and Unek, C. and Eldoğan, S. and Gencel, G. and Çetiner, Selim (2009) Regeneration of begonia plantlets by direct organogenesis. African Journal Of Biotechnology, 8 (9). pp. 1860-1863. ISSN 1684-5315

Meydan, Cem and Otu, Hasan and Sezerman, Uğur (2009) Prediction of peptides binding to MHC class I alleles by partial periodic pattern mining. In: 4th International Symposium on Health Informatics and Bioinformatics (HIBIT 09), Ankara, Türkiye

Meydan, Cem and Sezerman, Uğur and Otu, Hasan (2009) Prediction of peptides binding to MHC class I alleles by partial periodic pattern mining. In: International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, 2009 (IJCBS '09), Shangai, China

Peleg, Zvi and Çakmak, İsmail and Öztürk, Levent and Yazıcı, M. Atilla and Jun, Yan and Budak, Hikmet and Korol, Abraham B. and Fahima, Tzion and Saranga, Yehoshua (2009) Quantitative trait loci conferring grain mineral nutrient concentrations in durum wheat 3 wild emmer wheat RIL population. Theoretical and Applied Genetics, 119 (2). pp. 353-369. ISSN 0040-5752

Saygı, Ceren and Aydın, Mert and Yeşilırmak, Filiz and Sayers, Zehra (2009) Investigation of structural features of mutant metallothioneins: modifications in cysteine motifs of T. durum metallothionein (Mutant metallotionin’lerin yapısal özelliklerinin incelenmesi: T. durum metallotionin’in sistin motiflerinin modifikasyonu). In: 14th Biomedical Engineering Conference (BIYOMUT 2009), Izmir, Turkey

Solda, Giulia and Makunin, Igor V. and Sezerman, Uğur and Corradin, Alberto and Corti, Giorgio and Guffanti, Alessandro (2009) An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes. Briefings in Bioinformatics, 10 (5). pp. 475-489. ISSN 1467-5463

Su, Y. Senem and Öztürk, Levent and Çakmak, İsmail and Budak, Hikmet (2009) Turfgrass species response exposed to increasing rates of glyphosate application. European Journal of Agronomy, 31 (3 Sp. Iss. SI). pp. 120-125. ISSN 1161-0301

Telci, Dilek and Collighan, Russell John and Başağa, Hüveyda and Griffin, Martin (2009) Increased TG2 expression can result in induction of transforming growth factor beta 1, causing increased synthesis and deposition of matrix proteins, which can be regulated by nitric oxide. Journal of Biological Chemistry , 284 (43). pp. 29547-29558. ISSN 0021-9258

Tesfamariam, Tsehaye and Bott, S. and Çakmak, İsmail and Roemheld, V. and Neumann, G. (2009) Glyphosate in the rhizosphere-role of waiting times and different glyphosate binding forms in soils for phytotoxicity to non-target plants. European Journal of Agronomy, 31 (3). pp. 126-132. ISSN 1161-0301

Unver, Turgay and Namuth-Covert , Deena M. and Budak, Hikmet (2009) Review of current methodological approaches for characterizing microRNAs in plants. International Journal of Plant Genomics, 2009 . ISSN 1687-5370

Ünver, Turgay and Budak, Hikmet (2009) Conserved microRNAs and their targets in model grass species Brachypodium distachyon. Planta, 230 (4). pp. 659-669. ISSN 0032-0935 (Print) 1432-2048 (Online)

Vogel, John P. and Tuna, Metin and Budak, Hikmet and Huo, Naxin and Gu, Yong Q. and Steinwand, Michael A. (2009) Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon. BMC Plant Biology, 9 . ISSN 1471-2229

Yeniterzi, Süveyda and Sezerman, Uğur (2009) Enzyminer: automatic identification of protein level mutations and their impact on target enzymes from PubMed abstracts. BMC Bioinformatics, 10 . ISSN 1471-2105

Yeşilırmak, Filiz and Sayers, Zehra (2009) Biophysical characterization of a recombinant metallothionein and its possible use as a biosensor (Rekombinant metallotioninler’in biyofiziksel karakterizasyonu ve biyosensor olarak kullanılabilirliği). In: 14th Biomedical Engineering Conference (BIYOMUT 2009), Izmir, Turkey

Yörükoğlu, Deniz and Bakış, Yasin and Sezerman, Uğur (2009) An entropy based heuristic model for predicting functional sub-type divisions of protein families. In: 11th Genetic and Evolutionary Computation Conference, GECCO 2009, Montreal, Québec, Canada

2008

Çakmak, İsmail and Schjoerring , Jan K. (2008) Special topics in potassium and magnesium research. [Volumes Edited / Special Issues]

Adoro, Stanley and Erman, Batu and Sarafova, Sophia D. and Van Laethem, François and Park, Jung-Hyun and Feigenbaum, Lionel and Singer, Alfred (2008) Targeting CD4 coreceptor expression to postselection thymocytes reveals that CD4/CD8 lineage choice is neither error-prone nor stochastic. Journal of Immunology, 181 (10). pp. 6975-6983. ISSN 0022-1767 (Print) 1550-6606 (Online)

Akgül, Murat and Savak, Neşe Burcu and Dumanlı, Ahu Gümrah and Yürüm, Yuda and Karabakan, Abdülkerim (2008) Adsorption of bovine serum albumin (BSA) on clinoptilolite. (Submitted)

Bott, Sebastian and Tesfamariam, Tsehaye and Hande, Candan and Çakmak, İsmail and Römheld, Volker and Neumann, Günter (2008) Glyphosate-induced impairment of plant growth and micronutrient status in glyphosate-resistant soybean (Glycine max L.). Plant and Soil, 312 (1-2). pp. 185-194. ISSN 0032-079X (Print) 1573-5036 (Online)

Cebeci, Özge and Köktürk, B. and Ergen, Neslihan and Öztürk, Levent and Çakmak, İsmail and Budak, Hikmet (2008) Differential expression of wheat transcriptomes in response to varying cadmium concentrations. Biologia Plantarum, 52 (4). pp. 703-708. ISSN 0006-3134 (Print) 1573-8264 (Online)

Çakmak, İsmail and Kirkby, Ernest A. (2008) Role of magnesium in carbon partitioning and alleviating photooxidative damage. Physiologia Plantarum, 133 (issue 4). pp. 692-704. ISSN 0031-9317

Dinler-Doğanay, Gizem and Yeşilırmak, Filiz and Yar, Sümeyye and Collak, Filiz and Sayers, Zehra (2008) Plant type 1 metallothioneins: candidates for intrinsically unstructured proteins. In: Biophysical Society Meeting 2008, Long Beach, USA

Gonsalvesh, L. and Marinov, S.P. and Stefanova, M. and Yürüm, Yuda and Dumanlı, Ahu Gümrah and Dinler-Doğanay, Gizem and Kolankaya, N. and Sam, M. and Carleer, R. and Reggers, G. and Thijssen, E. and Yperman, J. (2008) Biodesulphurized subbituminous coal by different fungi and bacteria studied by reductive pyrolysis. Part 1: Initial coal. Fuel, 87 (12). pp. 2533-2543. ISSN 0016-2361

Gözüaçık, Devrim and Bialik, S. and Raveh, T. and Mitou, Geraldine and Shohat, G. and Sabanay, H. and Mizushima, N. and Yoshimori, T. and Kimchi, A. (2008) DAP-kinase is a mediator of endoplasmic reticulum stress-induced caspase activation and autophagic cell death. Cell Death and Differentiation, 15 (12). pp. 1875-1886. ISSN 1350-9047 / 1476-5403

Ilbagi, H. and Rabenstein, F. and Habekuss, A. and Ordon, F. and Citir, A. and Cebeci, O. and Budak, Hikmet (2008) Molecular, serological and transmission electron microscopic analysis of the barley yellow dwarf virus- PAV and the cereal yellow dwarf virus-RPV in canary seed (Phalaris canariensis L.). Cereal Research Communications, 36 (2). pp. 225-234. ISSN 0133-3720 (Print) 1788-9170 (Online)

Karaca, Esra (2008) Role of aven in apoptotic response following paclitaxel and docetaxel treatment in mda-mb231 breast cancer cells. [Thesis]

Karslı, Gizem (2008) Possible anticancer effects of pmc-a through the mechanisms of mitochondrial apoptosis and cell cycle arrest in colon carcinoma cell lines; hct116 wt and bax (-/-). [Thesis]

Kaymak, Ebru (2008) Arabidopsis thaliana lipases: cloning and expression in pichia pastoris. [Thesis]

Kütük, Özgür and Arısan, Elif Damla and Tezil, Tuğsan and Başağa, Hüveyda and Shoshan, Maria C. (2008) Cisplatin overcomes Bcl-2-mediated resistance to apoptosis by activating a p53-dependent proapoptotic pathway. (Submitted)

Onat, Ayda (2008) Effects of Istanbul metropolitan municipality compost product on plant growth, mineral nutrients and heavy metals in plant and soil. [Thesis]

Özdemir, Bahar Soğutmaz and Hernandez, Pilar and Filiz, Ertuğrul and Budak, Hikmet (2008) Brachypodium genomics. International Journal of Plant Genomics . ISSN 1687-5370 (Print) 1687-5389 (Online)

Özdemir, Özge (2008) Accumulation of selenium in different wheat genotypes and its protective role against various abiotic stress factors. [Thesis]

Peleg, Zvi and Saranga, Yehoshua and Yazıcı, Mustafa Atilla and Fahima, Tzion and Öztürk, Levent and Çakmak, İsmail (2008) Grain zinc, iron and protein concentrations and zinc-efficiency in wild emmer wheat under contrasting irrigation regimes. Plant and Soil, 306 (1-2). pp. 57-67. ISSN 0032-079X (Print) 1573-5036 (Online)

Saltukoğlu, Deniz (2008) Role of mapks in er stress-related cell cycle arrest and apoptosis. [Thesis]

Stacey, Samuel P. and McLaughlin, Michael J. and Çakmak, İsmail and Hettiarachchi, Ganga M. and Scheckel, Kirk G. and Karkkainen, Michael (2008) Root uptake of lipophilic zinc-rhamnolipid complexes. Journal of Agricultural and Food Chemistry, 56 (6). pp. 2112-2117. ISSN 0021-8561 (Print) 1520-5118 (Online)

Yeşil, Emel (2008) Genetic variation for salt and zinc defficiency tolerance in aegilops tauschii. [Thesis]

Yeşilırmak, Filiz (2008) Biophysical and functional characterization of wheat metallothionein at molecular level. [Thesis]

Yılancıoğlu, Kaan (2008) Pramanicin-a induces apoptosis in hct116 colon carcinoma cells: activation of jnk, p38, erk1/2 and induction of oxidative stress. [Thesis]

Yılmaz, Sinem (2008) Role of bcl-2 family members in 4-hne induced apoptosis. [Thesis]

2007

Gökçe, Onur (2007) Identification of zinc binding proteins of wheat seed. [Thesis]

Yardımcı, Galip Gürkan (2007) Structural alignment using network properties. [Thesis]

Barlak, Eda Sevim (2007) Feature selection using genetic algorithms. [Thesis]

Canlı, Özge (2007) Quantification of gene expression in agrostis species subjected to zinc deficiency /. [Thesis]

Çoruh, Ceyda (2007) Identification and characterization of a cDNA encoding ZIP transporter protein in Triticum dicoccoides. [Thesis]

Işık, Zeynep (2007) Molecular identification of differentially expressed Zinc related genes in cultivated bread wheat. [Thesis]

Korkmaz, Gözde (2007) Molecular analysis of historical wine grape variety candidates found in Urla. [Thesis]

Önal, Pınar (2007) Screening of plant factors that modulate the activation of the NF-kB transcription factor in mammalian cells. [Thesis]

Öztürk, Levent and Yazıcı, Mustafa Atilla and Eker, Selim and Gökmen, Özay Özgür and Römheld, Volker and Çakmak, İsmail (2007) Glyphosate inhibition of ferric reductase activity in iron deficient sunflower roots. New Phytologist, 177 (issue 4). pp. 899-906. ISSN 0028-646X (Print) 1469-8137 (Online)

Park , Jung-Hyun and Adoro , Stanley and Lucas , Philip J. and Sarafova , Sophia D. and Alag , Amala S. and Doan , Loretta L. and Erman, Batu and Liu , Xiaolong and Ellmeier , Wilfried and Bosselut , Remy and Feigenbaum , Lionel and Singer , Alfred (2007) 'Coreceptor tuning': cytokine signals transcriptionally tailor CD8 coreceptor expression to the self-specificity of the TCR. Nature immunology, 8 (10). 1049 -1059. ISSN 1529-2908

2006

Önal, Sedef (2006) Identification of resistance gene analos expressed in the absence of pathogen in tall fescue and bermudagrass /. [Thesis]

Nalbant, Işıl Şafak (2006) Determination of cis-acting regulatory elements of the IL-7R alpha gene using flow cytometric reporter assays. [Thesis]

Köktürk, Burcu (2006) Cadmium uptake and antioxidative enzymes in durum wheat cultivars in response to increasing Cd application. [Thesis]

Cebeci, Özge (2006) Molecular characterization and expression profiling of cd-responsive genes in triticum durum. [Thesis]

Kütük, Özgür (2006) Characterization of intracellular signaling cascades in 4-hydroxynonenal-induced apoptosis:. [Thesis]

Arslan, Mehmet Alper and Kütük, Özgür and Başağa, Hüveyda (2006) Protein kinases as drug targets in cancer. Current Cancer Drug Targets, 6 (7). pp. 623-634. ISSN 1568-0096

Budak, Hikmet and Kasap, Zeynep and Shearman, Robert C. and Dweikat, İsmail and Sezerman, Uğur and Mahmood, Abid (2006) Molecular characterization of cDNA encoding resistance gene-like sequences in Buchloe dactyloides. Molecular biotechnology, 34 (3). pp. 293-301. ISSN 1073-6085 (Print) 1559-0305 (Online)

Erayman, Mustafa and Abeyo, Bekele Geleta and Baenziger, P. Stephen and Budak, Hikmet and Eskridge, Kent M. (2006) Evaluation of seedling characteristics of wheat (triticum aestivum L.) through canonical correlation analysis. Cereal Research Communications, 34 (4). pp. 1231-1238. ISSN 0133-3720 (Print) 1788-9170 (Online)

Kütük , Özgür and Başağa, Hüveyda (2006) Bcl-2 protein family: Implications in vascular apoptosis and atherosclerosis. Apoptosis, 11 (10). pp. 1661-1675. ISSN 1360-8185 (Print) 1573-675X (Online)

Tekbulut, Mehmet Tuğrul (2006) MicroRNA target prediction by constraint programming. [Thesis]

2005

Akçapınar, Günseli Bayram (2005) Covalent modification of enzymes for textile processes. [Thesis]

Arslan, Alper Mehmet (2005) Role of heat shock proteins in tumor necrosis factor-induced nuclear factor-kappaB signaling pathway. [Thesis]

Aksoylar, İbrahim Halil (2005) Identification of upstream conserved noncoding sequences for the analysis of transcriptional activation on IL-7 receptor alpha gene. [Thesis]

Okan, Osman Burak (2005) Glassiness and coupling of time scales in functional proteins /. [Thesis]

Kurtuluş, Sema (2005) Genetic reporter asseys to study the regulation of interleukin-7 receptor alpha gene expression /. [Thesis]

Göktuna, Serkan İsmail (2005) MEKK1 and MEKK3 involvement in TNF-alpha signalling in cervical carcinoma hela cells. [Thesis]

Baloğlu, Çetin and Baysal, Canan and Koch, Michel and Taralp, Alpay (2005) Influence of Ph on the thermal gelation of food proteins modeled by a variable pD NMR study of lysozyme in D20. Abstracts of Papers of the American Chemical Society, 229 . U49-U49. ISSN 0065-7727

Baloğlu, Çetin and Baysal, Canan and Koch, Michel and Taralp, Alpay (2005) Protein gelation impeded in the presence of vitamins: a kinetic study using NMR. Abstracts of Papers of the American Chemical Society, 229 . U49-U49. ISSN 0065-7727

Baloğlu, Çetin and Baysal, Canan and Koch, Michel H. J. and Taralp, Alpay (2005) Food stability examined at the level of protein structure: NMR and molecular dynamics study of an egg-white protein. Abstracts of Papers of the American Chemical Society, 229 . U62-U62. ISSN 0065-7727

Budak, Hikmet and Shearman, Robert C. and Dweikat, İsmail (2005) Evolution of Buchloë dactyloides based on cloning and sequencing of matK, rbcL, and cob genes from plastid and mitochondrial genomes. Genome, 48 (3). pp. 411-416. ISSN 0831-2796

Sarafova, Sophia D. and Erman, Batu and Yu, Qing and Van Laethem, François and Guinter, Terry and Sharrow, Susan O. and Feigenbaum, Lionel and Wildt, Kathryn F. and Ellmeier, Wilfried and Singer, Alfred (2005) Modulation of coreceptor transcription during positive selection dictates lineage fate independently of TCR/coreceptor specificity. Immunity, 23 (1). pp. 75-87. ISSN 1074-7613

2004

Kaplan Türköz, Burcu (2004) Investigation of cloning strategies for A. thaliana G Protein [alpha]-subunit gene in Pichia Pastoris. [Thesis]

Dartan, Burcu (2004) A novel AP2 domain transcription factor from lycopersicon esculentum, functions in Tobacco Mosaic Virus pathogenesis. [Thesis]

Köleli, Nurcan and Eker, Selim and Çakmak, İsmail (2004) Effect of zinc fertilization on cadmium toxicity in durum and bread wheat grown in zinc-deficient soil. Environmental Pollution, 131 (3). pp. 453-459. ISSN 0269-7491

Kütük, Özgür and Adli, Mazhar and Poli, Giuseppe and Başağa, Hüveyda (2004) Resveratrol protects against 4-HNE induced oxidative stress and apoptosis in Swiss 3T3 fibroblasts. Biofactors, 20 (1). pp. 1-10. ISSN 0951-6433

2003

Öztürk, Hasan Ümit (2003) Cloning characterization and expression of a novel metallothionein gene (mt-d) from triticum durum. [Thesis]

Işık, Zerrin (2003) Computational approaches to protein structure prediction. [Thesis]

Bilecen, Kıvanç (2003) Cloning, characterization and expression of a novel metallothionein gene from triticum and theoretical and experimental structure-function relationship prediction. [Thesis]

Seçkin, Çağdaş (2003) A. thaliana G protein y-subunit gene : cloning, characterization and expression. [Thesis]

Erdoğan, Didem Gülcenan (2003) Influence of calcium deficiency on superoxide generating-NADPH oxidase and antioxidant defense systems in bean root cells. [Thesis]

Bakkal, Süphan Emine (2003) Cloning, characterization and expression of A. thaliana G protein α-subunit gene for structural studies. [Thesis]

Gamsız, Ece Dilber (2003) Cytotoxicity of peroxynitrite and nitric oxide induced oxidative stress on 3T3 fibroblast cell line. [Thesis]

Şahin, Erinç (2003) Construction of a GFP containing recombinant plasmid facilitating immobilization, visualization and quantification of fusion proteins on interactive polymeric surfaces. [Thesis]

Kütük, Özgür and Başağa, Hüveyda (2003) Aspirin prevents apoptosis and NF-kappa B activation induced by H2O2 in HeLa cells. Free Radical Research, 37 (12). pp. 1267-1276. ISSN 1071-5762

Kütük, Özgür and Başağa, Hüveyda (2003) Inflammation meets oxidation: NF-kappa B as a mediator of initial lesion development in atherosclerosis. Trends in molecular medicine, 9 (12). pp. 549-557. ISSN 1471-4914

Torun, B. and Kalaycı, M. and Öztürk, L. and Torun, A. and Aydın, M. and Çakmak, İsmail (2003) Differences in shoot boron concentrations, leaf symptoms, and yield of Turkish barley cultivars grown on boron-toxic soil in field. Journal of Plant Nutrition, 26 (9). pp. 1735-1747. ISSN 0190-4167

2002

Doğruel, Mutlu (2002) Computational prediction of protein subcellular localization and function. [Thesis]

Şahin, Mert (2002) Structure prediction of A.thaliana G protein alpha subunit using bioinformatics tools based on sequence alignments. [Thesis]

Adlı, Mezher (2002) The Role of lipid peroxidation end product, 4-Hydroxy-2-Nonenal in cell signalling. [Thesis]

Tiryakioğlu, Melis (2002) Effect of cadmium on growth and antioxidant enzymes in two barley cultivars. [Thesis]

Akan, Pelin (2002) Computational approaches to understanding the protein structure. [Thesis]

Dasgan, H. Yıldız and Aktaş, Hakan and Abak, Kazım and Çakmak, İsmail (2002) Determination of screening techniques to salinity tolerance in tomatoes and investigation of genotype responses. Plant Science, 163 (4). pp. 695-703. ISSN 0168-9452

Yanıkoğlu, Berrin and Erman, Burak (2002) Minimum energy configurations of the 2-dimensional HP-model of proteins by self-organizing networks. Journal of Computational Biology, 9 (4). pp. 613-620. ISSN 1066-5277

2001

Torun, A. and Gültekin, I. and Kalaycı, M. and Yılmaz, A. and Eker, S. and Çakmak, İsmail (2001) Effects of zinc fertilization on grain yield and shoot concentrations of zinc, boron, and phosphorus of 25 wheat cultivars grown on a zinc-deficient and boron-toxic soil. Journal of Plant Nutrition, 24 (11). pp. 1817-1829. ISSN 0190-4167

1999

Onat, D. and Boscoboinik, D. and Azzi, A. and Başağa, Hüveyda (1999) Effect of alpha-tocopherol and silibin dihemisuccinate on the proliferation of human skin fibroblasts. Biotechnology and Applied Biochemistry, 29 (part 3). pp. 213-215. ISSN 0885-4513 (Print) 1470-8744 (Electronic)

Sayers, Zehra and Brouillon, Patricia and Svergun, Dimitri I. and Zielenkiewicz, Piotr and Koch, Michel H. J. (1999) Biochemical and structural characterization of recombinant copper-metallothionein from Saccharomyces cerevisiae. European Journal of Biochemistry, 262 (3). pp. 858-865. ISSN 0014-2956

This list was generated on Wed Aug 20 01:04:12 2014 EEST.