PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data
Bakır-Güngör, Burcu and Egemen, Ece and Sezerman, Uğur (2014) PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data. Bioinformatics, 30 (9). pp. 1287-1289. ISSN 1367-4803 (Print) 1460-2059 (Online)
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Official URL: http://dx.doi.org/10.1093/bioinformatics/btt743
Genome-wide association studies (GWAS) have revolutionized the search for the variants underlying human complex diseases. However, in a typical GWAS, only a minority of the single-nucleotide polymorphisms (SNPs) with the strongest evidence of association is explained. One possible reason of complex diseases is the alterations in the activity of several biological pathways. Here we present a web server called Pathway and Network-Oriented GWAS Analysis to devise functionally important pathways through the identification of SNP-targeted genes within these pathways. The strength of our methodology stems from its multidimensional perspective, where we combine evidence from the following five resources: (i) genetic association information obtained through GWAS, (ii) SNP functional information, (iii) protein-protein interaction network, (iv) linkage disequilibrium and (v) biochemical pathways.
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