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Genome rearrangement and planning: revisited

Uras, Tansel and Erdem, Esra (2010) Genome rearrangement and planning: revisited. In: 20th International Conference on Automated Planning and Scheduling (ICAPS 2010), Toronto, Ontario, Canada

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Abstract

Evolutionary trees of species can be reconstructed by pairwise comparison of their entire genomes. Such a comparison can be quantified by determining the number of events that change the order of genes in a genome. Earlier Erdem and Tillier formulated the pairwise comparison of entire genomes as the problem of planning rearrangement events that transform one genome to the other. We reformulate this problem as a planning problem to extend its applicability to genomes with multiple copies of genes and with unequal gene content, and illustrate its applicability and effectiveness on three real datasets: mitochondrial genomes of Metazoa, chloroplast genomes of Campanulaceae, chloroplast genomes of various land plants and green algae.

Item Type:Papers in Conference Proceedings
Subjects:UNSPECIFIED
ID Code:15934
Deposited By:Esra Erdem
Deposited On:30 Nov 2010 10:03
Last Modified:30 Nov 2010 10:03

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